mRNA_P-wetherbeei_contig11394.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11394.1.1
Unique NamemRNA_P-wetherbeei_contig11394.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11394.1.1 vs. uniprot
Match: C1ECH4_MICCC (MYND-type domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1ECH4_MICCC)

HSP 1 Score: 58.9 bits (141), Expect = 1.430e-8
Identity = 26/43 (60.47%), Postives = 35/43 (81.40%), Query Frame = 1
Query:    1 CSCCGRDEQPNVK-LLQCGACKTTKYCSKQCQVDHWKSHKAQC 126
            CS CG  ++P+ K LL+CG CKTT+YCSK+CQV+ W +HKA+C
Sbjct:    3 CSGCGAAKRPDGKSLLRCGKCKTTQYCSKECQVNMWPTHKAEC 45          
BLAST of mRNA_P-wetherbeei_contig11394.1.1 vs. uniprot
Match: A0A146HWG5_MYCCL (MYND-type domain-containing protein n=2 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146HWG5_MYCCL)

HSP 1 Score: 57.8 bits (138), Expect = 3.000e-8
Identity = 24/43 (55.81%), Postives = 27/43 (62.79%), Query Frame = 1
Query:    1 CSCCGRDEQPNVKLLQCGACKTTKYCSKQCQVDHWKSHKAQCK 129
            CS C       V L  CG C+ T+YCSK CQVDHWK+HK  CK
Sbjct:   33 CSQCAASSSATVTLKLCGGCQLTRYCSKSCQVDHWKTHKLSCK 75          
BLAST of mRNA_P-wetherbeei_contig11394.1.1 vs. uniprot
Match: A0A0C2X867_AMAMK (MYND-type domain-containing protein n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2X867_AMAMK)

HSP 1 Score: 57.8 bits (138), Expect = 3.750e-8
Identity = 26/44 (59.09%), Postives = 30/44 (68.18%), Query Frame = 1
Query:    4 SCCGRDEQPNVKLLQCGACKTTKYCSKQCQVDHWKSHKAQCKEA 135
            +C   D     KLL CGACKTTKYCS +CQ + WKSHK QCK +
Sbjct: 1129 ACARCDGAGKPKLLLCGACKTTKYCSAECQKEDWKSHKKQCKRS 1172          
BLAST of mRNA_P-wetherbeei_contig11394.1.1 vs. uniprot
Match: A0A0C9SX59_PLICR (MYND-type domain-containing protein n=1 Tax=Plicaturopsis crispa FD-325 SS-3 TaxID=944288 RepID=A0A0C9SX59_PLICR)

HSP 1 Score: 56.6 bits (135), Expect = 4.150e-8
Identity = 26/55 (47.27%), Postives = 38/55 (69.09%), Query Frame = 1
Query:    1 CSCCGRDEQPNVKLLQCGACKTTKYCSKQCQVDHWKSHKAQCKEARRGSTGSAGS 165
            C+ C +++  +  L QC  CK+T YCSK+CQV HW SHK+QC+    G++GS+ S
Sbjct:    8 CAKCAKEDSLS-HLSQCSRCKSTTYCSKECQVAHWPSHKSQCRSGATGASGSSSS 61          
BLAST of mRNA_P-wetherbeei_contig11394.1.1 vs. uniprot
Match: A0A6A5YE51_9PLEO (MYND-type zinc finger protein samB n=1 Tax=Lophiotrema nucula TaxID=690887 RepID=A0A6A5YE51_9PLEO)

HSP 1 Score: 57.0 bits (136), Expect = 6.080e-8
Identity = 25/43 (58.14%), Postives = 28/43 (65.12%), Query Frame = 1
Query:    1 CSCCGRDEQPNVKLLQCGACKTTKYCSKQCQVDHWKSHKAQCK 129
            C+ C   E+   KLL CG CK  KYCSK CQ  HWK+HKA CK
Sbjct:  233 CATCRAGEKAGSKLLVCGGCKDRKYCSKDCQKKHWKTHKAFCK 275          
BLAST of mRNA_P-wetherbeei_contig11394.1.1 vs. uniprot
Match: A0A8J9VW59_BRALA (Hypp739 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9VW59_BRALA)

HSP 1 Score: 56.6 bits (135), Expect = 9.480e-8
Identity = 24/45 (53.33%), Postives = 29/45 (64.44%), Query Frame = 1
Query:    1 CSCCGRDEQPNVKLLQCGACKTTKYCSKQCQVDHWKS-HKAQCKE 132
            C  C R E P  K  +CG C+ T+YCSKQCQ  HW+  HK +CKE
Sbjct:  641 CGFCNRQELPEAKFQKCGRCRKTRYCSKQCQHQHWRGGHKDECKE 685          
BLAST of mRNA_P-wetherbeei_contig11394.1.1 vs. uniprot
Match: D8Q889_SCHCM (MYND-type domain-containing protein n=1 Tax=Schizophyllum commune (strain H4-8 / FGSC 9210) TaxID=578458 RepID=D8Q889_SCHCM)

HSP 1 Score: 55.5 bits (132), Expect = 1.570e-7
Identity = 23/35 (65.71%), Postives = 26/35 (74.29%), Query Frame = 1
Query:   25 QPNVKLLQCGACKTTKYCSKQCQVDHWKSHKAQCK 129
            Q  VKLL C  CK + YCS++CQV HW SHKAQCK
Sbjct:   22 QTEVKLLSCSKCKLSHYCSRECQVAHWPSHKAQCK 56          
BLAST of mRNA_P-wetherbeei_contig11394.1.1 vs. uniprot
Match: A0A8K1CBX8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CBX8_PYTOL)

HSP 1 Score: 55.5 bits (132), Expect = 2.400e-7
Identity = 21/39 (53.85%), Postives = 29/39 (74.36%), Query Frame = 1
Query:   22 EQPNVKLLQCGACKTTKYCSKQCQVDHWKSHKAQCKEAR 138
            + P+ KL++CG C+TT+YCS+QCQ   WK HK +CK  R
Sbjct:  313 DNPDGKLMKCGGCRTTQYCSRQCQKKAWKEHKTECKRIR 351          
BLAST of mRNA_P-wetherbeei_contig11394.1.1 vs. uniprot
Match: UPI000644BAD2 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644BAD2)

HSP 1 Score: 55.5 bits (132), Expect = 2.430e-7
Identity = 26/44 (59.09%), Postives = 30/44 (68.18%), Query Frame = 1
Query:    1 CSCCGRDEQPNVKLLQCGACKTTKYCSKQCQVDHWKSHKAQCKE 132
            CSCC   +Q  VK L CG CKT  YCSKQCQ +HW +HK  CK+
Sbjct:  757 CSCC---KQTLVKPLICGYCKTVAYCSKQCQHEHWVTHKDSCKQ 797          
BLAST of mRNA_P-wetherbeei_contig11394.1.1 vs. uniprot
Match: A0A1Y1I782_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I782_KLENI)

HSP 1 Score: 55.1 bits (131), Expect = 3.270e-7
Identity = 21/41 (51.22%), Postives = 27/41 (65.85%), Query Frame = 1
Query:   10 CGRDEQPNVKLLQCGACKTTKYCSKQCQVDHWKSHKAQCKE 132
            CG+DE    K  +C AC   +YCS+ CQ+ HWK+HK  CKE
Sbjct:  396 CGKDEATAGKFKRCNACAKARYCSRDCQLQHWKAHKKDCKE 436          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11394.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
C1ECH4_MICCC1.430e-860.47MYND-type domain-containing protein n=1 Tax=Microm... [more]
A0A146HWG5_MYCCL3.000e-855.81MYND-type domain-containing protein n=2 Tax=Mycena... [more]
A0A0C2X867_AMAMK3.750e-859.09MYND-type domain-containing protein n=1 Tax=Amanit... [more]
A0A0C9SX59_PLICR4.150e-847.27MYND-type domain-containing protein n=1 Tax=Plicat... [more]
A0A6A5YE51_9PLEO6.080e-858.14MYND-type zinc finger protein samB n=1 Tax=Lophiot... [more]
A0A8J9VW59_BRALA9.480e-853.33Hypp739 protein n=1 Tax=Branchiostoma lanceolatum ... [more]
D8Q889_SCHCM1.570e-765.71MYND-type domain-containing protein n=1 Tax=Schizo... [more]
A0A8K1CBX8_PYTOL2.400e-753.85Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
UPI000644BAD22.430e-759.09hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A1Y1I782_KLENI3.270e-751.22Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11394contigP-wetherbeei_contig11394:3..582 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog296587.XP_002504327.1
PFAMszf-MYND
Model size197
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.35e-09
EggNOG OGs2E8NF@1|root,2SF41@2759|Eukaryota
DescriptionMYND finger
Cds size195
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185909.5903864-CDS-P-wetherbeei_contig11394:2..821683185909.5903864-CDS-P-wetherbeei_contig11394:2..82Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11394 3..82 +
1683185909.6021583-CDS-P-wetherbeei_contig11394:466..5811683185909.6021583-CDS-P-wetherbeei_contig11394:466..581Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11394 467..581 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11394.1.1prot_P-wetherbeei_contig11394.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11394 3..581 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11394.1.1

>prot_P-wetherbeei_contig11394.1.1 ID=prot_P-wetherbeei_contig11394.1.1|Name=mRNA_P-wetherbeei_contig11394.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=65bp
CSCCGRDEQPNVKLLQCGACKTTKYCSKQCQVDHWKSHKAQCKEARRGST
GSAGSVPMQRRPSGQ
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mRNA from alignment at P-wetherbeei_contig11394:3..582+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11394.1.1 ID=mRNA_P-wetherbeei_contig11394.1.1|Name=mRNA_P-wetherbeei_contig11394.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=580bp|location=Sequence derived from alignment at P-wetherbeei_contig11394:3..582+ (Phaeothamnion wetherbeei SAG_119_79)
TGCTCATGTTGTGGGCGGGATGAACAGCCAAATGTGAAGCTCCTCCAGTG CGGCGCGTGCAAGACCACGAAATACTGCAGGCGAGTGGCCGAGGACCCCT CGTTCTCTCCGCACGATCTTAGCTCGTTGTACATGACGCAGTTCTCCCAC GTATTCATGCCGGCGAGCGGCTTCAACAATACGGCTTTCGTCTTTTTTGG TGGCGTGGCTATGGCGAGATCCCAGGGTCTGCCATGTGTCAGCATCGATG AATCCTTCCGTGCTCTGCGCTTTCACCGTATAAACGAAAGAATGTGCAAG CACCGTGGGAAGCGTGGTGAGGATATAACCTGCCGTCAGCGCTCCTTGTC TGACGCTCTTGGGGGAGAGACGAAGTGAGGTGAATCAACCCTTACACGTT CCCTTCTTCTCTTTCTTCCTTCTCCTCACCTTTATTTACTTGTATTCTCC TACGATGCGTGCAGTAAGCAATGCCAGGTAGATCACTGGAAGAGCCACAA AGCGCAATGCAAAGAGGCTAGGAGAGGATCGACTGGATCGGCGGGCAGTG TGCCGATGCAGCGGCGACCGAGCGGCCAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11394:3..582+

>mRNA_P-wetherbeei_contig11394.1.1 ID=mRNA_P-wetherbeei_contig11394.1.1|Name=mRNA_P-wetherbeei_contig11394.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=195bp|location=Sequence derived from alignment at P-wetherbeei_contig11394:3..582+ (Phaeothamnion wetherbeei SAG_119_79)
TGCTCATGTTGTGGGCGGGATGAACAGCCAAATGTGAAGCTCCTCCAGTG
CGGCGCGTGCAAGACCACGAAATACTGCAGTAAGCAATGCCAGGTAGATC
ACTGGAAGAGCCACAAAGCGCAATGCAAAGAGGCTAGGAGAGGATCGACT
GGATCGGCGGGCAGTGTGCCGATGCAGCGGCGACCGAGCGGCCAA
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