mRNA_P-wetherbeei_contig1139.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1139.5.1
Unique NamemRNA_P-wetherbeei_contig1139.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1139.5.1 vs. uniprot
Match: A0A835ZBB6_9STRA (Histone H2A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBB6_9STRA)

HSP 1 Score: 210 bits (535), Expect = 2.960e-68
Identity = 107/123 (86.99%), Postives = 116/123 (94.31%), Query Frame = 1 
Query:    1 GKGGRGGDKKKATTRSAKAGLQFPVGRIGRFLKQGRYSQRVGGGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHVQLAVRNDEELNKLLGNVTIASGGVLPNIHAVLLPKKTASKGA 369
            GKGGRG + KK T++SAKAGLQFPV R+GR+LKQGRY+ RVG GAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRH+QLAVRNDEELN+LLGNVTIASGGVLPNIHAVLLPKKTA+K A
Sbjct:    5 GKGGRGAEGKKITSQSAKAGLQFPVARMGRYLKQGRYADRVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQLAVRNDEELNRLLGNVTIASGGVLPNIHAVLLPKKTAAKAA 127
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BLAST of mRNA_P-wetherbeei_contig1139.5.1 vs. uniprot
Match: A0A836CG77_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG77_9STRA)

HSP 1 Score: 209 bits (533), Expect = 5.410e-68
Identity = 109/125 (87.20%), Postives = 118/125 (94.40%), Query Frame = 1 
Query:    1 GKGGRGGDKKKATTRSAKAGLQFPVGRIGRFLKQGRYSQRVGGGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHVQLAVRNDEELNKLLGNVTIASGGVLPNIHAVLLPKKTASKGAKA 375
            GKGGRG + KK+T++S+KAGLQFPV R+GRFLK GRY++RVG GAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRH+QLAVRNDEELNKLLGNVTIASGGVLPNIHAVLLPKKTAS  AKA
Sbjct:    5 GKGGRGAEAKKSTSKSSKAGLQFPVARLGRFLKVGRYAERVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHAVLLPKKTAS-AAKA 128
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BLAST of mRNA_P-wetherbeei_contig1139.5.1 vs. uniprot
Match: A0A835ZLE9_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLE9_9STRA)

HSP 1 Score: 203 bits (517), Expect = 2.130e-65
Identity = 103/125 (82.40%), Postives = 115/125 (92.00%), Query Frame = 1 
Query:    1 GKGGRGGDKKKATTRSAKAGLQFPVGRIGRFLKQGRYSQRVGGGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHVQLAVRNDEELNKLLGNVTIASGGVLPNIHAVLLPKKTASKGAKA 375
            GKGGRG   KKA ++SAKAGLQFPVGR+GRFLKQGRY++RVG GAPVY+AAV+EYLCAE+LEL+GNAARDNKKSRI+PRH+QLAVRNDEELNKLLG VTIA+GGVLPNIHAVLLPKKT SK   A
Sbjct:    7 GKGGRG--DKKAVSKSAKAGLQFPVGRVGRFLKQGRYAKRVGAGAPVYMAAVMEYLCAEVLELSGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGKVTIAAGGVLPNIHAVLLPKKTRSKSKAA 129
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BLAST of mRNA_P-wetherbeei_contig1139.5.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI)

HSP 1 Score: 201 bits (511), Expect = 9.720e-65
Identity = 103/121 (85.12%), Postives = 112/121 (92.56%), Query Frame = 1 
Query:    1 GKGGRGGDKKKATTRSAKAGLQFPVGRIGRFLKQGRYSQRVGGGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHVQLAVRNDEELNKLLGNVTIASGGVLPNIHAVLLPKKTASK 363
            GKGGRG   KK+TTRSAKAGLQFPVGR+GRFLK+G+Y+ RVG GAPVYLAAVLEYL AE+LELAGNAARDNKK+RI+PRH+QLAVRNDEELNKLLG VTIASGGVLPNIHAVLLPKKT  K
Sbjct:    5 GKGGRG---KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 122
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BLAST of mRNA_P-wetherbeei_contig1139.5.1 vs. uniprot
Match: A0A6G0X3A7_9STRA (Histone H2A n=29 Tax=Saprolegniaceae TaxID=4764 RepID=A0A6G0X3A7_9STRA)

HSP 1 Score: 200 bits (509), Expect = 3.880e-64
Identity = 102/118 (86.44%), Postives = 112/118 (94.92%), Query Frame = 1 
Query:    7 GGRGGDKKKATTRSAKAGLQFPVGRIGRFLKQGRYSQRVGGGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHVQLAVRNDEELNKLLGNVTIASGGVLPNIHAVLLPKKTAS 360
            GGRG  K K ++RSAKAGLQFPVGR+ RFLK+GRY+QR+GGGAPVYLAAVLEYLCAEILELAGNAARDNKKSRI+PRH+QLAVRNDEELNKLLGNVTIASGGVLPNIH VLLPKK++S
Sbjct:    9 GGRG-KKGKTSSRSAKAGLQFPVGRVARFLKKGRYAQRIGGGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHNVLLPKKSSS 125
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BLAST of mRNA_P-wetherbeei_contig1139.5.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA)

HSP 1 Score: 199 bits (506), Expect = 5.620e-64
Identity = 103/119 (86.55%), Postives = 112/119 (94.12%), Query Frame = 1 
Query:    1 GKGGRGGDKKKATTRSAKAGLQFPVGRIGRFLKQGRYSQRVGGGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHVQLAVRNDEELNKLLGNVTIASGGVLPNIHAVLLPKKTA 357
            GKGGRGG  KK+TT SAKAGLQFPVGRIGR+L+QG+Y+ R+G GAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRH+ LAV+NDEELNKLLG VTIASGGVLPNIHAVLLPKK+A
Sbjct:    5 GKGGRGG--KKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSA 121
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BLAST of mRNA_P-wetherbeei_contig1139.5.1 vs. uniprot
Match: A0A7S3K2Q9_9STRA (Histone H2A n=4 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K2Q9_9STRA)

HSP 1 Score: 199 bits (506), Expect = 9.450e-64
Identity = 100/112 (89.29%), Postives = 107/112 (95.54%), Query Frame = 1 
Query:   40 TRSAKAGLQFPVGRIGRFLKQGRYSQRVGGGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHVQLAVRNDEELNKLLGNVTIASGGVLPNIHAVLLPKKTASKGAKA 375
            T+SAKAGLQFPVGRIGRFLKQG+Y+ RVG GAPVYLAAVLEYLCAEILELAGNAARDNKKSRI+PRH+QLAVRNDEELNKLLG+VTIASGGVLPNIHAVLLPKK+ SK  KA
Sbjct:   21 TKSAKAGLQFPVGRIGRFLKQGKYATRVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGSVTIASGGVLPNIHAVLLPKKSKSKTTKA 132
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BLAST of mRNA_P-wetherbeei_contig1139.5.1 vs. uniprot
Match: A0A0W8DCN3_PHYNI (Histone H2A n=4 Tax=Phytophthora TaxID=4783 RepID=A0A0W8DCN3_PHYNI)

HSP 1 Score: 199 bits (506), Expect = 9.760e-64
Identity = 99/122 (81.15%), Postives = 115/122 (94.26%), Query Frame = 1 
Query:    7 GGRGGDKKKATTRSAKAGLQFPVGRIGRFLKQGRYSQRVGGGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHVQLAVRNDEELNKLLGNVTIASGGVLPNIHAVLLPKKTASKGAK 372
            GGRG  K K +TRSAKAGLQFPVGR+ R+LK+GRY+QR+GGGAPVY+AAVLEYLCAEILELAGNAARD+KK+RI+PRH+Q+AVRNDEELNKLLG+VTIASGGV+PNIH+VLLPKK+AS G K
Sbjct:   10 GGRG-KKGKGSTRSAKAGLQFPVGRVARYLKKGRYAQRIGGGAPVYMAAVLEYLCAEILELAGNAARDHKKTRIIPRHIQMAVRNDEELNKLLGDVTIASGGVMPNIHSVLLPKKSASAGKK 130
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BLAST of mRNA_P-wetherbeei_contig1139.5.1 vs. uniprot
Match: B7FZS7_PHATC (Histone H2A n=2 Tax=Naviculales TaxID=38748 RepID=B7FZS7_PHATC)

HSP 1 Score: 198 bits (503), Expect = 2.710e-63
Identity = 100/118 (84.75%), Postives = 112/118 (94.92%), Query Frame = 1 
Query:    1 GKGGRGGDKKKATTRSAKAGLQFPVGRIGRFLKQGRYSQRVGGGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHVQLAVRNDEELNKLLGNVTIASGGVLPNIHAVLLPKKT 354
            GKGGRG DKK+ T+ S+KAGLQFPVGRIGR+L+QG+Y+ R+G GAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRH+ LAV+NDEELNKLLGNVTIA+GGVLPNIHA+LLPKKT
Sbjct:   12 GKGGRG-DKKQTTSSSSKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGNVTIAAGGVLPNIHAILLPKKT 128
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BLAST of mRNA_P-wetherbeei_contig1139.5.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI)

HSP 1 Score: 199 bits (506), Expect = 3.250e-63
Identity = 102/118 (86.44%), Postives = 111/118 (94.07%), Query Frame = 1 
Query:    1 GKGGRGGDKKKATTRSAKAGLQFPVGRIGRFLKQGRYSQRVGGGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHVQLAVRNDEELNKLLGNVTIASGGVLPNIHAVLLPKKT 354
            GKGGRG   KK+TTRSAKAGLQFPVGR+GRFLK+G+Y+ RVG GAPVYLAAVLEYL AE+LELAGNAARDNKK+RI+PRH+QLAVRNDEELNKLLG VTIASGGVLPNIHAVLLPKKT
Sbjct:   50 GKGGRG---KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKT 164
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1139.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZBB6_9STRA2.960e-6886.99Histone H2A n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A836CG77_9STRA5.410e-6887.20Histone H2A n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A835ZLE9_9STRA2.130e-6582.40Histone H2A n=2 Tax=Tribonema minus TaxID=303371 R... [more]
D7FWI9_ECTSI9.720e-6585.12Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A6G0X3A7_9STRA3.880e-6486.44Histone H2A n=29 Tax=Saprolegniaceae TaxID=4764 Re... [more]
A0A6U2JFS4_9STRA5.620e-6486.55Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 Rep... [more]
A0A7S3K2Q9_9STRA9.450e-6489.29Histone H2A n=4 Tax=Aureoumbra lagunensis TaxID=44... [more]
A0A0W8DCN3_PHYNI9.760e-6481.15Histone H2A n=4 Tax=Phytophthora TaxID=4783 RepID=... [more]
B7FZS7_PHATC2.710e-6384.75Histone H2A n=2 Tax=Naviculales TaxID=38748 RepID=... [more]
D7G193_ECTSI3.250e-6386.44Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1139contigP-wetherbeei_contig1139:6024..6401 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog159749.K0TK43
PFAMsHistone,Histone_H2A_C
Model size378
Max annot lvl2836|Bacillariophyta
KEGG koko:K11251
KEGG Pathwayko04217,ko05034,ko05322,map04217,map05034,map05322
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.42e-66
EggNOG OGsCOG5262@1|root,KOG1756@2759|Eukaryota,2XCAY@2836|Bacillariophyta
DescriptionHistone H2A
Cds size378
COG categoryB
BRITEko00000,ko00001,ko03036,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185909.3763938-CDS-P-wetherbeei_contig1139:6023..64011683185909.3763938-CDS-P-wetherbeei_contig1139:6023..6401Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1139 6024..6401 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1139.5.1prot_P-wetherbeei_contig1139.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1139 6024..6401 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1139.5.1

>prot_P-wetherbeei_contig1139.5.1 ID=prot_P-wetherbeei_contig1139.5.1|Name=mRNA_P-wetherbeei_contig1139.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=126bp
GKGGRGGDKKKATTRSAKAGLQFPVGRIGRFLKQGRYSQRVGGGAPVYLA
AVLEYLCAEILELAGNAARDNKKSRIVPRHVQLAVRNDEELNKLLGNVTI
ASGGVLPNIHAVLLPKKTASKGAKA*
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mRNA from alignment at P-wetherbeei_contig1139:6024..6401-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1139.5.1 ID=mRNA_P-wetherbeei_contig1139.5.1|Name=mRNA_P-wetherbeei_contig1139.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig1139:6024..6401- (Phaeothamnion wetherbeei SAG_119_79)
GGCAAGGGCGGCCGCGGCGGGGACAAGAAGAAGGCGACGACGCGCTCGGC
CAAGGCCGGGCTGCAGTTCCCGGTCGGGCGGATCGGGCGCTTCCTCAAGC
AGGGCCGCTATTCGCAACGCGTCGGTGGCGGCGCGCCCGTCTACCTCGCG
GCGGTGCTCGAGTACCTCTGCGCTGAGATCCTTGAGCTCGCCGGCAACGC
CGCCCGCGACAACAAGAAGAGCCGCATCGTCCCCCGCCACGTGCAGCTGG
CGGTGCGCAACGACGAGGAGCTCAACAAGCTGCTCGGCAACGTGACCATT
GCCAGCGGCGGCGTCCTGCCCAACATCCACGCCGTCCTCCTGCCCAAGAA
GACGGCGTCCAAGGGCGCCAAGGCGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1139:6024..6401-

>mRNA_P-wetherbeei_contig1139.5.1 ID=mRNA_P-wetherbeei_contig1139.5.1|Name=mRNA_P-wetherbeei_contig1139.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig1139:6024..6401- (Phaeothamnion wetherbeei SAG_119_79)
GGCAAGGGCGGCCGCGGCGGGGACAAGAAGAAGGCGACGACGCGCTCGGC
CAAGGCCGGGCTGCAGTTCCCGGTCGGGCGGATCGGGCGCTTCCTCAAGC
AGGGCCGCTATTCGCAACGCGTCGGTGGCGGCGCGCCCGTCTACCTCGCG
GCGGTGCTCGAGTACCTCTGCGCTGAGATCCTTGAGCTCGCCGGCAACGC
CGCCCGCGACAACAAGAAGAGCCGCATCGTCCCCCGCCACGTGCAGCTGG
CGGTGCGCAACGACGAGGAGCTCAACAAGCTGCTCGGCAACGTGACCATT
GCCAGCGGCGGCGTCCTGCCCAACATCCACGCCGTCCTCCTGCCCAAGAA
GACGGCGTCCAAGGGCGCCAAGGCGTGA
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