mRNA_P-wetherbeei_contig1139.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1139.1.1
Unique NamemRNA_P-wetherbeei_contig1139.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1139.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1139contigP-wetherbeei_contig1139:31..492 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog42099.EPrPV00000016728
PFAMsUDPGT
Model size321
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.93e-07
EggNOG OGsKOG1192@1|root,KOG1192@2759|Eukaryota,1MCXE@121069|Pythiales
DescriptionUDP-glucosyl transferase family protein. Source PGD
Cds size303
COG categoryCG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185909.2834337-CDS-P-wetherbeei_contig1139:30..1591683185909.2834337-CDS-P-wetherbeei_contig1139:30..159Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1139 31..159 -
1683185909.2923803-CDS-P-wetherbeei_contig1139:300..4741683185909.2923803-CDS-P-wetherbeei_contig1139:300..474Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1139 301..474 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185909.299325-UTR-P-wetherbeei_contig1139:474..4921683185909.299325-UTR-P-wetherbeei_contig1139:474..492Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1139 475..492 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1139.1.1prot_P-wetherbeei_contig1139.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1139 31..474 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1139.1.1

>prot_P-wetherbeei_contig1139.1.1 ID=prot_P-wetherbeei_contig1139.1.1|Name=mRNA_P-wetherbeei_contig1139.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=101bp
MAHPHVTALATGGDLWAIQAALWHGKPVVAAPTTSPQFEGATLAAEMHAG
VLVRGAWDKAAWAAAAEAVHAQEFRRAALHVAALLRLGGGTRRAADLIEA
E
back to top

mRNA from alignment at P-wetherbeei_contig1139:31..492-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1139.1.1 ID=mRNA_P-wetherbeei_contig1139.1.1|Name=mRNA_P-wetherbeei_contig1139.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig1139:31..492- (Phaeothamnion wetherbeei SAG_119_79)
GAGCTGCTGCCGGCCCTGATGGCGCATCCGCACGTGACGGCGCTGGCGAC
GGGCGGCGACCTCTGGGCCATCCAGGCGGCGCTTTGGCACGGCAAGCCCG
TCGTCGCCGCACCCACCACCTCGCCGCAGTTCGAGGGCGCCACGCTCGCC
GCCGAGATGCATGCTGGCGTTCTCGTCAGAGGAGCCTGGGATGTGGCGCT
GCGCTCCGGCGGCGGCAGTAGCGGCGGTAGCGGCGGCAGGAGCTTTGGTG
GTAGCGGGTCTGGCAGCGGCGGCGGGAGTTTTGGGGGCGCGGGCGGCCAC
GGCGGCTGGGCGGGCGGGTCATTCGCGGGTCAGAAGGCGGCCTGGGCGGC
GGCGGCCGAGGCTGTGCACGCCCAGGAGTTCCGCCGCGCCGCGCTGCACG
TGGCGGCGCTGCTACGGCTTGGCGGCGGGACGCGGCGGGCGGCCGATCTC
ATCGAAGCCGAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1139:31..492-

>mRNA_P-wetherbeei_contig1139.1.1 ID=mRNA_P-wetherbeei_contig1139.1.1|Name=mRNA_P-wetherbeei_contig1139.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=303bp|location=Sequence derived from alignment at P-wetherbeei_contig1139:31..492- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCATCCGCACGTGACGGCGCTGGCGACGGGCGGCGACCTCTGGGC
CATCCAGGCGGCGCTTTGGCACGGCAAGCCCGTCGTCGCCGCACCCACCA
CCTCGCCGCAGTTCGAGGGCGCCACGCTCGCCGCCGAGATGCATGCTGGC
GTTCTCGTCAGAGGAGCCTGGGATAAGGCGGCCTGGGCGGCGGCGGCCGA
GGCTGTGCACGCCCAGGAGTTCCGCCGCGCCGCGCTGCACGTGGCGGCGC
TGCTACGGCTTGGCGGCGGGACGCGGCGGGCGGCCGATCTCATCGAAGCC
GAG
back to top