mRNA_P-wetherbeei_contig11387.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11387.2.1
Unique NamemRNA_P-wetherbeei_contig11387.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11387.2.1 vs. uniprot
Match: A0A835Z0A0_9STRA (Histidine phosphatase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0A0_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 2.800e-9
Identity = 33/70 (47.14%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:    4 YAAWLVPDATRPSPLLEEIQRLHAASRADPRVRSAASLLPERGGGRLHIALSDFVPMRYDALHVLCSALR 213
            YA WL PD + P PLL E  R  AA+RAD  +R    +   R GGRLH+ALS F+P+ ++ +  L  ALR
Sbjct:  232 YAVWLEPDRSAPPPLLAEHDRFCAAARADAALRDCTFIA--RRGGRLHVALSSFLPLPFELVQRLGLALR 299
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11387.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z0A0_9STRA2.800e-947.14Histidine phosphatase superfamily n=1 Tax=Tribonem... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11387contigP-wetherbeei_contig11387:1792..2004 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size213
Hectar predicted targeting categoryother localisation
Exons1
Cds size213
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185909.1577225-CDS-P-wetherbeei_contig11387:1791..20041683185909.1577225-CDS-P-wetherbeei_contig11387:1791..2004Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11387 1792..2004 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11387.2.1prot_P-wetherbeei_contig11387.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11387 1792..2004 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11387.2.1

>prot_P-wetherbeei_contig11387.2.1 ID=prot_P-wetherbeei_contig11387.2.1|Name=mRNA_P-wetherbeei_contig11387.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=71bp
EYAAWLVPDATRPSPLLEEIQRLHAASRADPRVRSAASLLPERGGGRLHI
ALSDFVPMRYDALHVLCSALR
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mRNA from alignment at P-wetherbeei_contig11387:1792..2004+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11387.2.1 ID=mRNA_P-wetherbeei_contig11387.2.1|Name=mRNA_P-wetherbeei_contig11387.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=213bp|location=Sequence derived from alignment at P-wetherbeei_contig11387:1792..2004+ (Phaeothamnion wetherbeei SAG_119_79)
GAGTATGCCGCCTGGCTGGTGCCGGACGCGACGCGGCCGTCGCCGCTTCT
CGAAGAGATCCAGCGGCTGCACGCCGCGAGCCGCGCGGACCCCCGCGTGC
GATCGGCGGCGTCGCTGCTGCCGGAGCGCGGTGGCGGCCGCCTCCACATC
GCCCTCAGCGACTTTGTGCCGATGCGCTACGACGCGCTGCACGTGCTGTG
CTCGGCATTGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11387:1792..2004+

>mRNA_P-wetherbeei_contig11387.2.1 ID=mRNA_P-wetherbeei_contig11387.2.1|Name=mRNA_P-wetherbeei_contig11387.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=213bp|location=Sequence derived from alignment at P-wetherbeei_contig11387:1792..2004+ (Phaeothamnion wetherbeei SAG_119_79)
GAGTATGCCGCCTGGCTGGTGCCGGACGCGACGCGGCCGTCGCCGCTTCT
CGAAGAGATCCAGCGGCTGCACGCCGCGAGCCGCGCGGACCCCCGCGTGC
GATCGGCGGCGTCGCTGCTGCCGGAGCGCGGTGGCGGCCGCCTCCACATC
GCCCTCAGCGACTTTGTGCCGATGCGCTACGACGCGCTGCACGTGCTGTG
CTCGGCATTGCGC
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