mRNA_P-wetherbeei_contig11384.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11384.1.1
Unique NamemRNA_P-wetherbeei_contig11384.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11384.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11384contigP-wetherbeei_contig11384:1863..2051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog45285.XP_003647763.1
Preferred nameGDE1
PFAMsAnk_2,Ank_4,GDPD,SPX
Model size189
Max annot lvl4751|Fungi
KEGG rclassRC00017,RC00425
KEGG koko:K18696
KEGG ReactionR01030,R01470
KEGG Pathwayko00564,map00564
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0006873,GO:0008081,GO:0008150,GO:0008152,GO:0008889,GO:0009056,GO:0009395,GO:0009987,GO:0016042,GO:0016787,GO:0016788,GO:0019637,GO:0019725,GO:0030002,GO:0030320,GO:0030643,GO:0035690,GO:0042221,GO:0042493,GO:0042578,GO:0042592,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044424,GO:0044464,GO:0046434,GO:0046475,GO:0046486,GO:0046503,GO:0047389,GO:0048878,GO:0050801,GO:0050896,GO:0051716,GO:0055062,GO:0055081,GO:0055082,GO:0055083,GO:0065007,GO:0065008,GO:0070887,GO:0071704,GO:0072501,GO:0072502,GO:0072505,GO:0072506,GO:0098771,GO:1901575
Exons1
Evalue3.65e-05
EggNOG OGsCOG0584@1|root,COG0666@1|root,COG5409@1|root,KOG0504@2759|Eukaryota,KOG1162@2759|Eukaryota,KOG2421@2759|Eukaryota,38EQN@33154|Opisthokonta,3NUB5@4751|Fungi,3QPFW@4890|Ascomycota,3RTT3@4891|Saccharomycetes,3RZZF@4893|Saccharomycetaceae
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-26_006620.1
EC3.1.4.46
Descriptionto Saccharomyces cerevisiae GDE1 (YPL110C)
Cds size189
COG categoryU
BiGG ReactioniMM904.YPL110C
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185908.997776-CDS-P-wetherbeei_contig11384:1862..20511683185908.997776-CDS-P-wetherbeei_contig11384:1862..2051Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11384 1863..2051 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11384.1.1prot_P-wetherbeei_contig11384.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11384 1863..2051 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11384.1.1

>prot_P-wetherbeei_contig11384.1.1 ID=prot_P-wetherbeei_contig11384.1.1|Name=mRNA_P-wetherbeei_contig11384.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=63bp
GGSPLYQACRLDAPESCRALLKRGASLVLRWEGDTPLEVAVRSGSARSVA
VILEHVKALEAAA
back to top

mRNA from alignment at P-wetherbeei_contig11384:1863..2051-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11384.1.1 ID=mRNA_P-wetherbeei_contig11384.1.1|Name=mRNA_P-wetherbeei_contig11384.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=189bp|location=Sequence derived from alignment at P-wetherbeei_contig11384:1863..2051- (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCTCGCCCCTCTACCAGGCATGCAGGCTTGACGCCCCCGAGTCCTG
TCGGGCGCTCCTGAAGCGCGGCGCTTCGCTGGTGCTGCGGTGGGAAGGCG
ACACGCCCCTCGAGGTGGCGGTACGCAGCGGCAGTGCCCGCTCGGTCGCC
GTCATCCTCGAGCACGTCAAGGCACTGGAGGCAGCGGCT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig11384:1863..2051-

>mRNA_P-wetherbeei_contig11384.1.1 ID=mRNA_P-wetherbeei_contig11384.1.1|Name=mRNA_P-wetherbeei_contig11384.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=189bp|location=Sequence derived from alignment at P-wetherbeei_contig11384:1863..2051- (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCTCGCCCCTCTACCAGGCATGCAGGCTTGACGCCCCCGAGTCCTG
TCGGGCGCTCCTGAAGCGCGGCGCTTCGCTGGTGCTGCGGTGGGAAGGCG
ACACGCCCCTCGAGGTGGCGGTACGCAGCGGCAGTGCCCGCTCGGTCGCC
GTCATCCTCGAGCACGTCAAGGCACTGGAGGCAGCGGCT
back to top