mRNA_P-wetherbeei_contig11380.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11380.1.1
Unique NamemRNA_P-wetherbeei_contig11380.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11380.1.1 vs. uniprot
Match: A0A1Z9UKH0_9GAMM (MaoC-like domain-containing protein n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1Z9UKH0_9GAMM)

HSP 1 Score: 197 bits (502), Expect = 1.770e-62
Identity = 94/142 (66.20%), Postives = 110/142 (77.46%), Query Frame = 1
Query:   22 YFDDLKPGDLFHFGPYHVTREELLEFNGRWDPLPIHMNDAAAQARGLKGMSASGQYTLCIKQKMLNGAPWTDAVIGALGFDELRFPHPVYPGDDISLTIECLELRASKSKPDRGIVKFAFRLTNQDGVAVLNYLDTVMFARR 447
            YF+D+  GD    GPY VTR ELLEFN +WDPLPIH++   A  +G K ++ASGQYTLCIKQ MLN A WT+AVIGALGFDE+RFP PVYPGDDISL IECL  R SKSK DRGI+ F F+L NQ+   VL+Y DTVMF+R+
Sbjct:    8 YFEDINVGDQLKLGPYAVTRSELLEFNRKWDPLPIHLSQEKAIEKGYKDITASGQYTLCIKQWMLNQANWTNAVIGALGFDEMRFPLPVYPGDDISLEIECLATRPSKSKSDRGILTFFFQLINQNDKVVLHYKDTVMFSRK 149          
BLAST of mRNA_P-wetherbeei_contig11380.1.1 vs. uniprot
Match: A0A800JS85_9CHLR (MaoC-like domain-containing protein n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A800JS85_9CHLR)

HSP 1 Score: 187 bits (475), Expect = 2.670e-58
Identity = 91/142 (64.08%), Postives = 103/142 (72.54%), Query Frame = 1
Query:   22 YFDDLKPGDLFHFGPYHVTREELLEFNGRWDPLPIHMNDAAAQARGLKGMSASGQYTLCIKQKMLNGAPWTDAVIGALGFDELRFPHPVYPGDDISLTIECLELRASKSKPDRGIVKFAFRLTNQDGVAVLNYLDTVMFARR 447
            YF+D   GD    GPYHV R E+LEFN +WD LPIH++   A  RG K ++ASGQYTLCIKQ MLN A WT AVIGALGFDE+RFP PVYP D I L IECL  R S SKPDRGI+ F F+L NQ+   VL+Y DTVMFA R
Sbjct:   11 YFEDFSIGDELSLGPYHVKRAEVLEFNQKWDHLPIHIDPKKAAERGYKDVTASGQYTLCIKQWMLNQASWTKAVIGALGFDEMRFPLPVYPDDHIRLKIECLNTRLSNSKPDRGILTFFFQLINQEDKVVLHYKDTVMFACR 152          
BLAST of mRNA_P-wetherbeei_contig11380.1.1 vs. uniprot
Match: A0A3D5DCW0_9GAMM (Acyl dehydratase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DCW0_9GAMM)

HSP 1 Score: 184 bits (466), Expect = 7.560e-57
Identity = 82/140 (58.57%), Postives = 107/140 (76.43%), Query Frame = 1
Query:   25 FDDLKPGDLFHFGPYHVTREELLEFNGRWDPLPIHMNDAAAQARGLKGMSASGQYTLCIKQKMLNGAPWTDAVIGALGFDELRFPHPVYPGDDISLTIECLELRASKSKPDRGIVKFAFRLTNQDGVAVLNYLDTVMFAR 444
            FDD+  G+   FGPY V  +EL+EFN RWDPLP+H++ AAA+A+G +G++ASGQYTLC+KQ  +N  PW ++VIGALGFDE+RFPHPVY GD++S  + C   R SKSKPDRGIV  + R+ NQ+   VL+Y DTVM +R
Sbjct:   13 FDDVVVGESHTFGPYRVPEQELIEFNRRWDPLPMHLDAAAARAKGHRGITASGQYTLCVKQLFVNQTPWRNSVIGALGFDEVRFPHPVYIGDELSAVVVCTHKRRSKSKPDRGIVTLSMRIYNQNDETVLSYRDTVMLSR 152          
BLAST of mRNA_P-wetherbeei_contig11380.1.1 vs. uniprot
Match: A0A1F4C5C2_9PROT (MaoC-like domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13b TaxID=1797496 RepID=A0A1F4C5C2_9PROT)

HSP 1 Score: 144 bits (364), Expect = 1.870e-41
Identity = 65/151 (43.05%), Postives = 101/151 (66.89%), Query Frame = 1
Query:    4 TMSTARYFDDLKPGDLFHFGPYHVTREELLEFNGRWDPLPIHMNDAAAQARGLKGMSASGQYTLCIKQKMLNGAPWTDAVIGALGFDELRFPHPVYPGDDISLTIECLELRASKSKPDRGIVKFAFRLTNQDGVAVLNYLDTVMFARRGGG 456
            TM+ A Y++D+ PG     GPYHV +EE++EF+ +W+PLP H+++AAA+A    G++A G YTL ++  +L+  P  +A++G + +D++RF  PV PGDD+ + +E LE R +KSKPDRG+VK    + NQ    V++  DT+M   R  G
Sbjct:    2 TMNDAIYYEDVVPGRTLKVGPYHVAKEEVMEFSRKWNPLPFHIDEAAAKATIYGGLTAPGIYTLAVRTMLLDRLPMLEAMLGTVVWDDVRFQKPVRPGDDLRVEMEWLEKRMAKSKPDRGLVKMRITVLNQHDEPVMSQFDTIMMRLRQPG 152          
BLAST of mRNA_P-wetherbeei_contig11380.1.1 vs. uniprot
Match: A0A7V8WYQ8_9ACTN (Enoyl-CoA hydratase 2 n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V8WYQ8_9ACTN)

HSP 1 Score: 133 bits (334), Expect = 5.680e-37
Identity = 62/144 (43.06%), Postives = 96/144 (66.67%), Query Frame = 1
Query:   19 RYFDDLKPGDLFHFGPYHVTREELLEFNGRWDPLPIHMNDAAAQARGLKGMSASGQYTLCIKQKMLNGAPWTDA-VIGALGFDELRFPHPVYPGDDISLTIECLELRASKSKPDRGIVKFAFRLTNQDGVAVLNYLDTVMFARR 447
            +YF+D   G+ F  G Y VT +E++ F  ++DP P H++ AAA A    G++ASG +T+ ++  ++N +P  DA ++  LG+DE+RF HPV+ GD +S+   CLE+RAS SKPDRG+V+ +  L NQDG  VL+ +  ++  RR
Sbjct:    2 KYFEDFVVGEEFECGAYEVTADEIVAFARQYDPQPFHLDQAAADASVFGGLTASGFHTVAMQGALINASPEADAAIVAGLGWDEVRFAHPVWAGDTLSVRFTCLEVRASASKPDRGVVRTSVVLRNQDGQDVLSSVHNLLLKRR 145          
BLAST of mRNA_P-wetherbeei_contig11380.1.1 vs. uniprot
Match: A0A1I5CR05_9BRAD (Acyl dehydratase n=5 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=A0A1I5CR05_9BRAD)

HSP 1 Score: 127 bits (320), Expect = 7.940e-35
Identity = 61/145 (42.07%), Postives = 91/145 (62.76%), Query Frame = 1
Query:   13 TARYFDDLKPGDLFHFGPYHVTREELLEFNGRWDPLPIHMNDAAAQARGLKGMSASGQYTLCIKQKMLNGAPWTDAVIGALGFDELRFPHPVYPGDDISLTIECLELRASKSKPDRGIVKFAFRLTNQDGVAVLNYLDTVMFARR 447
            T+RYF++++ GD F  GPY V+++E+++F  ++DP P H+++ AA      G+SAS  +T  I   + N       V+  +G+DELR P+PV PGD++ L +  LE R SKSKPDRGIV+   RL NQ    VL  +  ++ ARR
Sbjct:    2 TSRYFEEIEVGDSFKAGPYFVSKDEIIQFAKQFDPRPFHLDEEAAARSVFAGLSASAAHTFAIFISLTNKLQPPRRVLAGMGWDELRLPNPVRPGDELDLEVTALEKRESKSKPDRGIVRNQVRLRNQRREIVLQAIGNILVARR 146          
BLAST of mRNA_P-wetherbeei_contig11380.1.1 vs. uniprot
Match: A0A845QDC2_9HYPH (Acyl dehydratase n=2 Tax=Pyruvatibacter mobilis TaxID=1712261 RepID=A0A845QDC2_9HYPH)

HSP 1 Score: 127 bits (318), Expect = 1.380e-34
Identity = 64/146 (43.84%), Postives = 89/146 (60.96%), Query Frame = 1
Query:   19 RYFDDLKPGDLFHFGP-YHVTREELLEFNGRWDPLPIHMNDAAAQARGLKGMSASGQYTLCIKQKMLNGAPWTDAVIGALGFDELRFPHPVYPGDDISLTIECLELRASKSKPDRGIVKFAFRLTNQDGVAVLNYLDTVMFARRGG 453
            RYFDD + G+ +  G  Y +T++E++ F  +WDP P H+++AAA+      ++A G +   +  K+  G P   AVIGALG+DE+RF       D +SLTIEC+E R S SKPDRGIV+    L NQ G  V     T++ ARRGG
Sbjct:    3 RYFDDFELGEQWPIGKTYTMTKDEIVSFAAKWDPQPFHVDEAAAEKSVYGTLTACGTHIQAVVLKLAQGLPHETAVIGALGYDEVRFHQAAKLDDVLSLTIECIETRPSSSKPDRGIVRNRHTLVNQAGDTVFTQTTTLLIARRGG 148          
BLAST of mRNA_P-wetherbeei_contig11380.1.1 vs. uniprot
Match: A0A1F9NX95_9DELT (MaoC-like domain-containing protein n=2 Tax=unclassified Desulfobacula TaxID=2593536 RepID=A0A1F9NX95_9DELT)

HSP 1 Score: 126 bits (317), Expect = 1.890e-34
Identity = 61/145 (42.07%), Postives = 94/145 (64.83%), Query Frame = 1
Query:   19 RYFDDLKPGDLFHFGPYHVTREELLEFNGRWDPLPIHMNDAAAQARGLKGMSASGQYTLCIKQKMLNGAPWTDAVIGALGFDELRFPHPVYPGDDISLTIECLELRASKSKPDRGIVKFAFRLTNQDGVAVLNYLDTVMFARRGG 453
            +YF+D   G++   G Y++T+EE++E+ G+WDP   H++  AA+    +G++A+G + + I    L       AV+  LG+DE+RF  P  PGD ++L  ECLE+R+S SKPDRG+VK    L+NQ G  VLNY+DT++ A+  G
Sbjct:    2 KYFEDFVLGEIEKVGEYYLTQEEIIEYAGKWDPHFFHIDPEAAEKSLFQGLTAAGTHLMAITVLHLVTHQPRVAVLAGLGWDEVRFLGPARPGDTLTLFRECLEVRSSASKPDRGVVKNRLTLSNQKGHPVLNYVDTLLVAKSSG 146          
BLAST of mRNA_P-wetherbeei_contig11380.1.1 vs. uniprot
Match: A0A5S9NY85_9HYPH (MaoC-like domain-containing protein n=1 Tax=Starkeya sp. HF14-78462 TaxID=2666134 RepID=A0A5S9NY85_9HYPH)

HSP 1 Score: 125 bits (313), Expect = 8.830e-34
Identity = 64/146 (43.84%), Postives = 94/146 (64.38%), Query Frame = 1
Query:   22 YFDDLKPGDLFHFGPYHVTREELLEFNGRWDPLPIHMNDAAAQARGLKGMSASGQYTLCIKQKMLN-GAPWTDAVIGALGFDELRFPHPVYPGDDISLTIECLELRASKSKPDRGIVKFAFRLTNQDGVAVLNYLDTVMFARRGGG 456
            +++D + G +   G Y V REE++ F   +DPLPIH++DAAA+A  L G+SASG +  CI  ++ + G       +G+ G DE+RF  PV+PG  +SL  E LE R+SKS+P+ G+VKF F L + DG  +++ + TVMF RR  G
Sbjct:    3 FWEDFQEGHVASCGRYVVGREEIIAFAREYDPLPIHLDDAAAEATRLGGLSASGWHLCCILMRLADDGFLLNSDGLGSPGVDEVRFLRPVHPGTVLSLRREVLETRSSKSRPETGLVKFRFELLDTDGNVMMDLVGTVMFGRRNPG 148          
BLAST of mRNA_P-wetherbeei_contig11380.1.1 vs. uniprot
Match: UPI0010BF6912 (acyl dehydratase n=1 Tax=Rhizobium sp. FKY42 TaxID=2562310 RepID=UPI0010BF6912)

HSP 1 Score: 124 bits (311), Expect = 1.580e-33
Identity = 60/150 (40.00%), Postives = 96/150 (64.00%), Query Frame = 1
Query:    7 MSTARYFDDLKPGDLFHFGPYHVTREELLEFNGRWDPLPIHMNDAAAQARGLKGMSASGQYTLCIKQKMLNGAPWTDAVIGALGFDELRFPHPVYPGDDISLTIECLELRASKSKPDRGIVKFAFRLTNQDGVAVLNYLDTVMFARRGGG 456
            M+  RYF+D+ PG         V  +E+L F  +WDP+PIH++  AA+A G  G++A G Y L +KQ++++  P+  A+IG+ G+DE+RF  PV+ GD ++L ++ LE R S++K DRG+V     L +  G  V+++LDT++  RR  G
Sbjct:    1 MTELRYFEDITPGSRDLGDQVVVDGDEMLAFARQWDPVPIHVDPKAAEALG--GLTAPGLYILALKQRLIHRLPFRPALIGSAGYDEVRFFRPVFAGDRLTLAVDWLESRHSRTKEDRGVVIHRLSLLDDQGETVMSHLDTLIVRRRTAG 148          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11380.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Z9UKH0_9GAMM1.770e-6266.20MaoC-like domain-containing protein n=3 Tax=Gammap... [more]
A0A800JS85_9CHLR2.670e-5864.08MaoC-like domain-containing protein n=1 Tax=Dehalo... [more]
A0A3D5DCW0_9GAMM7.560e-5758.57Acyl dehydratase n=1 Tax=Gammaproteobacteria bacte... [more]
A0A1F4C5C2_9PROT1.870e-4143.05MaoC-like domain-containing protein n=1 Tax=Betapr... [more]
A0A7V8WYQ8_9ACTN5.680e-3743.06Enoyl-CoA hydratase 2 n=1 Tax=Acidimicrobiia bacte... [more]
A0A1I5CR05_9BRAD7.940e-3542.07Acyl dehydratase n=5 Tax=unclassified Bradyrhizobi... [more]
A0A845QDC2_9HYPH1.380e-3443.84Acyl dehydratase n=2 Tax=Pyruvatibacter mobilis Ta... [more]
A0A1F9NX95_9DELT1.890e-3442.07MaoC-like domain-containing protein n=2 Tax=unclas... [more]
A0A5S9NY85_9HYPH8.830e-3443.84MaoC-like domain-containing protein n=1 Tax=Starke... [more]
UPI0010BF69121.580e-3340.00acyl dehydratase n=1 Tax=Rhizobium sp. FKY42 TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11380contigP-wetherbeei_contig11380:165..623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog797303.Natpe_2030
Preferred namemaoC3
PFAMsMaoC_dehydratas
Model size459
Max annot lvl183963|Halobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.01e-33
EggNOG OGsCOG2030@1|root,arCOG00776@2157|Archaea,2XWQH@28890|Euryarchaeota,23V9J@183963|Halobacteria
DescriptionAcyl dehydratase
Cds size453
COG categoryI
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185908.8726053-UTR-P-wetherbeei_contig11380:164..1701683185908.8726053-UTR-P-wetherbeei_contig11380:164..170Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11380 165..170 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185908.882643-CDS-P-wetherbeei_contig11380:170..6231683185908.882643-CDS-P-wetherbeei_contig11380:170..623Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11380 171..623 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11380.1.1prot_P-wetherbeei_contig11380.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11380 171..623 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11380.1.1

>prot_P-wetherbeei_contig11380.1.1 ID=prot_P-wetherbeei_contig11380.1.1|Name=mRNA_P-wetherbeei_contig11380.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=151bp
MSTARYFDDLKPGDLFHFGPYHVTREELLEFNGRWDPLPIHMNDAAAQAR
GLKGMSASGQYTLCIKQKMLNGAPWTDAVIGALGFDELRFPHPVYPGDDI
SLTIECLELRASKSKPDRGIVKFAFRLTNQDGVAVLNYLDTVMFARRGGG
*
back to top

mRNA from alignment at P-wetherbeei_contig11380:165..623+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11380.1.1 ID=mRNA_P-wetherbeei_contig11380.1.1|Name=mRNA_P-wetherbeei_contig11380.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=459bp|location=Sequence derived from alignment at P-wetherbeei_contig11380:165..623+ (Phaeothamnion wetherbeei SAG_119_79)
CAGACCATGAGCACAGCCCGCTACTTCGACGATCTCAAACCCGGCGACCT GTTCCACTTCGGCCCCTACCACGTTACGCGTGAAGAGCTGTTGGAGTTTA ACGGCCGTTGGGACCCGCTACCTATCCACATGAACGACGCTGCGGCGCAG GCGCGTGGACTGAAGGGCATGAGCGCTTCTGGGCAGTACACTTTGTGCAT CAAACAGAAGATGTTGAACGGCGCGCCGTGGACCGATGCCGTGATCGGAG CACTCGGCTTCGACGAGCTGCGCTTTCCCCATCCGGTGTATCCCGGTGAT GACATCAGCCTCACCATCGAGTGTCTGGAACTGCGCGCCTCGAAAAGCAA GCCCGATAGAGGCATCGTGAAGTTCGCCTTCCGACTGACTAATCAGGATG GCGTGGCAGTGCTGAATTATCTCGATACGGTGATGTTTGCGCGGCGTGGC GGGGGCTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig11380:165..623+

>mRNA_P-wetherbeei_contig11380.1.1 ID=mRNA_P-wetherbeei_contig11380.1.1|Name=mRNA_P-wetherbeei_contig11380.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig11380:165..623+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCACAGCCCGCTACTTCGACGATCTCAAACCCGGCGACCTGTTCCA
CTTCGGCCCCTACCACGTTACGCGTGAAGAGCTGTTGGAGTTTAACGGCC
GTTGGGACCCGCTACCTATCCACATGAACGACGCTGCGGCGCAGGCGCGT
GGACTGAAGGGCATGAGCGCTTCTGGGCAGTACACTTTGTGCATCAAACA
GAAGATGTTGAACGGCGCGCCGTGGACCGATGCCGTGATCGGAGCACTCG
GCTTCGACGAGCTGCGCTTTCCCCATCCGGTGTATCCCGGTGATGACATC
AGCCTCACCATCGAGTGTCTGGAACTGCGCGCCTCGAAAAGCAAGCCCGA
TAGAGGCATCGTGAAGTTCGCCTTCCGACTGACTAATCAGGATGGCGTGG
CAGTGCTGAATTATCTCGATACGGTGATGTTTGCGCGGCGTGGCGGGGGC
TGA
back to top