mRNA_P-wetherbeei_contig11378.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11378.1.1
Unique NamemRNA_P-wetherbeei_contig11378.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11378.1.1 vs. uniprot
Match: UPI001BAA6D78 (TniQ family protein n=5 Tax=Bacteria TaxID=2 RepID=UPI001BAA6D78)

HSP 1 Score: 961 bits (2484), Expect = 0.000e+0
Identity = 489/508 (96.26%), Postives = 500/508 (98.43%), Query Frame = 1
Query:   40 RSDLFAVTVLPPAQARVGALPLHIAPAEDEALASWIISLAATLKLSPLALCRMVFEIDAAADREWWRRPSADTLSVIGSKTGIDIGVLEAMTFARWSHARDDERPERFDGRYSSVPPAHGSRGRRIRICPMCLAEDARAYLRLFWMTGWAGVCPKHRIALTGRCPSCRGALYVDSLKARQTADLIACRKCGAKLAGGGAPAHEATLRLQQALIVGKRSGRLALPRIGDLDWPTMMALIDVLLGMVWIGTAREYRRRLFKRIADDLDLGEDQTDSIPWRSNYGGLLILAWLLEDLDAHLRAAIATLHTVHRDRLLARLPNLPEEMSERLRAILAPAAASRPQGRRSWRDWIDTLPESGTDLRERALGERYRLRRRRLFVLAAIRDGATVESAANSAGMRARTVYRLLDQGARNGLEAALERPRRGNKLTGAQAEALGRWIAGARAYQSRKAVIAQALTMFGVSLNTDEAYAVLRVHRRAGRGRRRRLWKPNPLRCTILAEPTHDSAPSS 1563
            RSDLFAV VLPPAQARVGALPLH+APAEDEALASWIISLAATLKLSPLALCRMVFEIDAAADREWWRRPSADTL+VIGSKTGIDIGVLEAMTFA WSHARDDERPERFDG+ SSV PAHGSRGRRIRICPMCLA+DARAYLRLFWMTGWAGVCPKHRI+LTGRCPSCR ALYV+SLKARQTA LIACRKCGAKLAGGGAPA+EATLRLQQALIVGKRSGRLALPRIGDLDWPTMMALIDVLLGMVWIGTAREYRRRLFKRIADDLDLGEDQTDSIPWRSNYGGLLILAWLLEDLDAHLRAAIATLHTVHRDRLLARLPNLPEEMSERLR ILAPAAASRPQGRRSWR+WIDTLPESGTDLRERALGERYRLRRRRLFVLAAIRDGATVESAA+SAGMRARTVYRLLDQGARNGLEAALERPRRGNKLTGAQAEALGRWIAGARA+QSRKAV+AQALTMFGVSLNTDEAYAVLRVHRRAGRGRRRRLWKPNPLRCTILAEPTHDSA SS
Sbjct:    3 RSDLFAVAVLPPAQARVGALPLHVAPAEDEALASWIISLAATLKLSPLALCRMVFEIDAAADREWWRRPSADTLAVIGSKTGIDIGVLEAMTFAGWSHARDDERPERFDGKNSSVQPAHGSRGRRIRICPMCLADDARAYLRLFWMTGWAGVCPKHRISLTGRCPSCRCALYVESLKARQTAGLIACRKCGAKLAGGGAPANEATLRLQQALIVGKRSGRLALPRIGDLDWPTMMALIDVLLGMVWIGTAREYRRRLFKRIADDLDLGEDQTDSIPWRSNYGGLLILAWLLEDLDAHLRAAIATLHTVHRDRLLARLPNLPEEMSERLRTILAPAAASRPQGRRSWREWIDTLPESGTDLRERALGERYRLRRRRLFVLAAIRDGATVESAADSAGMRARTVYRLLDQGARNGLEAALERPRRGNKLTGAQAEALGRWIAGARAHQSRKAVMAQALTMFGVSLNTDEAYAVLRVHRRAGRGRRRRLWKPNPLRCTILAEPTHDSARSS 510          
BLAST of mRNA_P-wetherbeei_contig11378.1.1 vs. uniprot
Match: UPI001FFFE9FE (TniQ family protein n=1 Tax=Bradyrhizobium sp. 200 TaxID=2782665 RepID=UPI001FFFE9FE)

HSP 1 Score: 541 bits (1394), Expect = 8.900e-187
Identity = 293/502 (58.37%), Postives = 350/502 (69.72%), Query Frame = 1
Query:   67 LPPAQARVGALPLHIAPAEDEALASWIISLAATLKLSPLALCRMVFEIDAAADREWWRRPSADTLSVIGSKTGIDIGVLEAMTFARWSHARDDERPERFDGRYSSVPPAHGSRG-RRIRICPMCLAEDARAYLRLFWMTGWAGVCPKHRIALTGRCPSCRGALYVDSLKARQTADLIACRKCGAKLAGG-GAPAHEATLRLQQALIVGKRSGRLALPRIGDLDWPTMMALIDVLLGMVWIGTAREYRRRLFKRIADDLDLGEDQTDSIPWRSNYGGLLILAWLLEDLDAHLRAAIATLHTVHRDRLLARLPNLPEEMSERLRAILAPAAASRPQGRRSWRDWIDTLPESGTDLRERALGERYRLRRRRLFVLAAIRDGATVESAANSAGMRARTVYRLLDQGARNGLEAALERPRRGNKLTGAQAEALGRWIAGARAYQSRKAVIAQALTMFGVSLNTDEAYAVLRVHRRAGR-GRRRRLWKPNPLRCTILAEPTHDSAPSS 1563
            +PPA A +G LPL +AP   EALASWI+ L+  L+LSPLAL RM F IDA  D EWWRRPS +TL+ I  +TG  +  L AMTFA  ++ARDDE P+RF GR+SS P    +R  RR+ ICP CLAED R YLRL W+ GW G+CP+HR  L GRCPSCR  L    L ARQ  D   CR+CGA LA   G  AH A LRLQ+ L+ GK+  R  LP +G LDW T MALIDVLLGMVWI     YR RLF RIA+DL L +     I W SNYGG++ILAWLL+DL   L A +A LH    DRLLAR+P+L  E+ +RLR ILAPA A  P+   SWR+WI TLPE+G DLRERAL ERY+LRR+RLF LAA+RDG  VE+AA + G+  +T+ R L +GA NGLEA LER RRG++L+GAQAEALG+WIA  RA Q R+AVI  AL+ FG+ L+ D+A  +LRVHR  GR GRR R WKP P R T +A  THD AP S
Sbjct:    1 MPPAPAAIGLLPLRVAPQNGEALASWILRLSVALRLSPLALGRMAFGIDADIDVEWWRRPSTETLARIAKRTGTSMDALAAMTFAGSANARDDETPQRFCGRHSSAPSLPRNRSDRRMNICPQCLAEDRRGYLRLLWINGWVGICPEHRTVLAGRCPSCRCMLRASGLNARQPVDPAICRRCGATLASAAGDSAHPAALRLQELLVAGKQLNRTELPGVGMLDWSTTMALIDVLLGMVWIDIPGRYRDRLFARIANDLGLSKHNI--IVWASNYGGMVILAWLLDDLPTRLPATMAILHAPRLDRLLARMPDLSTEIGDRLRVILAPANAPSPREPWSWRNWIRTLPETGDDLRERALSERYKLRRQRLFALAAVRDGTPVEAAAENIGVTRQTLCRWLQEGAANGLEATLERARRGSQLSGAQAEALGKWIAADRARQRRRAVINAALSQFGIILSPDQASGLLRVHR--GRPGRRHRPWKPKPQRATQVAGSTHDPAPGS 498          
BLAST of mRNA_P-wetherbeei_contig11378.1.1 vs. uniprot
Match: UPI001FDA5078 (TniQ family protein n=1 Tax=Bradyrhizobium sp. NAS80.1 TaxID=1680159 RepID=UPI001FDA5078)

HSP 1 Score: 505 bits (1301), Expect = 7.220e-173
Identity = 274/489 (56.03%), Postives = 331/489 (67.69%), Query Frame = 1
Query:  103 LHIAPAEDEALASWIISLAATLKLSPLALCRMVFEIDAAADREWWRRPSADTLSVIGSKTGIDIGVLEAMTFARWSHARDDERPERFDGRY-SSVPPAHGSRGRRIRICPMCLAEDARAYLRLFWMTGWAGVCPKHRIALTGRCPSCRGALYVDSLKARQTADLIACRKCGAKLAG-GGAPAHEATLRLQQALIVGKRSGRLALPRIGDLDWPTMMALIDVLLGMVWIGTAREYRRRLFKRIADDLDLGEDQTDSIPWRSNYGGLLILAWLLEDLDAHLRAAIATLHTVHRDRLLARLPNLPEEMSERLRAILAPAAASRPQGRRSWRDWIDTLPESGTDLRERALGERYRLRRRRLFVLAAIRDGATVESAANSAGMRARTVYRLLDQGARNGLEAALERPRRGNKLTGAQAEALGRWIAGARAYQSRKAVIAQALTMFGVSLNTDEAYAVLRVHRRAGRGRRRRLWKPNPLRCTILAEPTHDSAPSS 1563
            +H+AP   EALASWI+ L+  L+LSPLAL RM F IDA  D EWWRRPS  TL+ I  +TGI    L  MTF   + ARDDE P+RF  R+ S++        RR+ ICP CLAED R  LRL WM GWAG+CP+HR  LTGRCPSC   L    L AR+  D   CR+CGA LAG  G  AH+A LRLQ+ L+ GK+  R  LP +G LDW T MAL+DVLLGMVWI     YR RLF RIA+D  L   Q ++I W SNYGGL ILAWLLEDL   L A IA LH    DRLL R+P+L  E+ +RLR +L  A A  P+G  SWR WI +LPE+G++LRERAL ERY+LR +RLF  AA+RDG  VE+AA S G+  +T+ R L   A +GLEAALERP+R ++L+GAQAEALG+WIA  RA+Q R AVI+ AL+ FG+ L+ D+A  +LR HR A  GRR R WKP P R T +A  THD AP S
Sbjct:    1 MHVAPQNGEALASWILRLSVALRLSPLALGRMAFGIDADVDAEWWRRPSTQTLARIAKRTGISTHALVGMTFIGSASARDDEAPQRFCSRHGSALSLPRNPSDRRVNICPQCLAEDRRGCLRLLWMNGWAGICPQHRTVLTGRCPSCYCVLRASGLNARKPVDPSICRRCGATLAGVAGDGAHQAALRLQELLVAGKQLNRTELPGVGALDWSTTMALVDVLLGMVWIDIPGRYRDRLFARIANDFGLS--QHNNIVWASNYGGLAILAWLLEDLPTRLPATIAILHAPRLDRLLTRVPDLSSEIGDRLRVMLTRANAPSPRGPWSWRSWIISLPETGSELRERALSERYKLRHQRLFAFAAVRDGTPVEAAAESVGVTRQTLSRWLHDAATHGLEAALERPQRRSQLSGAQAEALGKWIAADRAHQRRGAVISAALSQFGIVLSPDQASRLLRDHR-ARPGRRHRPWKPKPQRTTQVAGSTHDPAPGS 486          
BLAST of mRNA_P-wetherbeei_contig11378.1.1 vs. uniprot
Match: M5F4U3_9HYPH (Uncharacterized protein n=5 Tax=Hyphomicrobiales TaxID=356 RepID=M5F4U3_9HYPH)

HSP 1 Score: 456 bits (1173), Expect = 5.880e-153
Identity = 254/525 (48.38%), Postives = 333/525 (63.43%), Query Frame = 1
Query:    1 VQASSDPPSVVVLRSDLFAVTVLPPAQARVGALPLHIAPAEDEALASWIISLAATLKLSPLALCRMVFEIDAAADREWWRRPSADTLSVIGSKTGIDIGVLEAMTFARWSHARDDERPERFDGRYSSVPPAHGSRGRRIRICPMCLAEDARAYLRLFWMTGWAGVCPKHRIALTGRCPSCRGALYVDSLKARQTADLIACRKCGAKLAG-GGAPAHEATLRLQQALIVGKRSGRLALPRIGDLDWPTMMALIDVLLGMVWIGTAREYRRRLFKRIADDLDLGEDQTDSIPWRSNYGGLLILAWLLEDLDAHLRAAIATLHTVHRDRLLARLPNLPEEMSERLRAILAPAAASRPQGRRSWRDWIDTLPESGTDLRERALGERYRLRRRRLFVLAAIRDGATVESAANSAGMRARTVYRLLDQGARNGLEAALERPRRGNKLTGAQAEALGRWIAGARAYQSRKAVIAQALTMFGVSLNTDEAYAVLRVHRRAGRG---RRRRLWKPNPLRCTILAEPTHDSAPSS 1563
            ++ASS PPSV VLRSDLFAV+ +P A      LP+HI PA DEAL SW++ ++  L+ SPL   R  F +DA  D EWWRRPSA  L+ I  +TG++   L AMTF  WS ARDDE  +RF  R  + P     +GRRI +C  CLAED R YLR  W+ GW GVCP+HR  L G CP CR  +    L A+   DL+AC++CG  LA   G PA++ ++ LQ  L+ GK++G + LP +GD++W TMMA+ D+LLGM+W G A ++R +LF RIA +LDLG +   S+   SNYG LL+L WL+ DL   L AAI  L +V  + LL R  ++ ++M+ RLR ILA A A+ P GR  W  WI++LPES ++LRERA  ERY+ RR+RL   AA++ GATV  AA  A ++  +VYR LD+G  +              LT AQ+EAL +WI G RA+Q+R+A++AQA   FGV L+ D A  +LR HR    G   RRRRLW P   R    A+PTHD AP S
Sbjct:    1 MRASSGPPSVGVLRSDLFAVSAMPEAFPARAMLPVHIEPAADEALVSWLVQVSWALRQSPLMFSRHGFNVDAVGDPEWWRRPSAGQLATIAERTGVEQARLRAMTFLGWSIARDDEDAQRFSSRRWTNPKLGRRKGRRIDVCGQCLAEDERPYLRRLWLLGWIGVCPRHRTRLIGECPGCRCPIRFKGLNAKAPVDLLACQRCGGGLARLQGQPANDRSVDLQSLLVAGKKTGVVLLPSVGDVEWATMMAVADMLLGMIWTGVATQHREQLFNRIARELDLGWEDRLSLSLGSNYGSLLMLDWLMADLPHRLPAAIGILKSVRFEGLLGRHDDIDDDMAARLRTILAAAIATPPVGRGVWHPWIESLPESASELRERAARERYKHRRQRLTAFAALKAGATVGEAAAIARVQPMSVYRWLDRGIEHXXXXXXXXXTGRPALTSAQSEALAQWIRGDRAHQNRRAIVAQAQARFGVELSLDVASNLLRKHRDRKPGSVRRRRRLWGPMKPRGP-RAKPTHDLAPGS 524          
BLAST of mRNA_P-wetherbeei_contig11378.1.1 vs. uniprot
Match: A0A521QES4_9HYPH (Uncharacterized protein n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521QES4_9HYPH)

HSP 1 Score: 427 bits (1097), Expect = 1.420e-141
Identity = 241/500 (48.20%), Postives = 301/500 (60.20%), Query Frame = 1
Query:   34 VLRSDLFAVTVLPPAQARVGALPLHIAPAEDEALASWIISLAATLKLSPLALCRMVFEIDAAADREWWRRPSADTLSVIGSKTGIDIGVLEAMTFARWSHARDDERPERFDGRYSSVPPAHGSRGRRIRICPMCLAEDARAYLRLFWMTGWAGVCPKHRIALTGRCPSCRGALYVDSLKARQTADLIACRKCGAKLAG-GGAPAHEATLRLQQALIVGKRSGRLALPRIGDLDWPTMMALIDVLLGMVWIGTA---REY-----RRRLFKRIADDLDLGEDQTDSIPWRSNYGGLLILAWLLEDLDAHLRAAIATLHTVHRDRLLARLPNLPEEMSERLRAILAPAAASRPQGRRSWRDWIDTLPESGTDLRERALGERYRLRRRRLFVLAAIRDGATVESAANSAGMRARTVYRLLDQGARNGLEAALERPRRGNKLTGAQAEALGRWIAGARAYQSRKAVIAQALTMFGVSLNTDEAYAVLRVHRRAGRGRRRRLWKP 1506
            +LRSD+F V   P        LP H+AP E EAL SWI  L+A L + P  LCR  F +DA  + EWW RP A+ L  + S TG+    L  MT + W+   DDE  +RF       P A  +R RR+ ICP+C+AE  R +L L W+ GW G CP+H + L+G CPSCR  L +  LK     DL+AC +C A+L G GG  AH A L LQ ALI GKRSG   +P  G LDWPT MAL DVLL MVW       R+Y     R RLF  I  DL + + + + +PW  NYGGLL+LAWLL DL+  L  A++TL T   + LL    +L +   ERLR ILA A    P+GRR+W+ W+  LPES  DLRERA+ ERY+ RR+RL  LA ++DGA+VE+ A   G+   +VYR L +G   GLEAALERP     LTG QAEAL +WIA  R +Q R A+ A+A   FG+ LN D A  +L  H RA  GRRRRLW P
Sbjct:    1 MLRSDVFEVAPAPAPSGGRAHLPRHVAPIEGEALVSWIAKLSADLDMGPRLLCRDAFGVDARRNPEWWSRPEAEVLERMESWTGVSRLRLIDMTLSDWAATMDDEEADRFSASRWRRPKASLARPRRLDICPLCVAEAPRPHLELIWILGWTGACPRHGVVLSGTCPSCRHVLRLRGLKDAGPVDLLACGRCAARLNGTGGFVAHPAVLDLQAALIAGKRSGTAIVPGAGALDWPTTMALADVLLAMVWARRTKKQRDYLAPRRRDRLFASIGRDLGMTQGEWERVPWTRNYGGLLLLAWLLRDLEVRLPRAMSTLCTPRLEGLLNPFTDLNDITKERLRTILAAATVKPPKGRRAWKPWLRILPESADDLRERAMHERYKHRRQRLRALAELKDGASVEAVATLVGVTPHSVYRWLHRGVAGGLEAALERPTGKPALTGTQAEALAQWIACDRVHQDRPAIAARAKEAFGIELNLDAASKLLAKHGRAPPGRRRRLWGP 500          
BLAST of mRNA_P-wetherbeei_contig11378.1.1 vs. uniprot
Match: UPI0018C1D9F7 (TniQ family protein n=2 Tax=Methylosinus sp. H3A TaxID=2785786 RepID=UPI0018C1D9F7)

HSP 1 Score: 424 bits (1091), Expect = 9.980e-141
Identity = 246/517 (47.58%), Postives = 316/517 (61.12%), Query Frame = 1
Query:   43 SDLFAVTVLP-PAQARVGALPLHIAPAEDEALASWIISLAATLKLSPLALCRMVFEIDAAADREWWRRPSADTLSVIGSKTGIDIGVLEAMTFARWSHARDDERPERFDGRYSSVPPAHGSRGRRIRICPMCLAEDARAYLRLFWMTGWAGVCPKHRIALTGRCPSCRGALYVDSLKARQTADLIACRKCGAKLAGGGA-PAHEATLRLQQALIVGKRSGRLALPRIGDLDWPTMMALIDVLLGMVWI---GTAREY-----RRRLFKRIADDLDLGEDQTDSIPWRSNYGGLLILAWLLEDLDAHLRAAIATLHTVHRDRLLARLPNLPEEMSERLRAILAPAAASRPQGRRSWRDWIDTLPESGTDLRERALGERYRLRRRRLFVLAAIRDGATVESAANSAGMRARTVYRLLDQGARNGLEAALERPRRGNKLTGAQAEALGRWIAGARAYQSRKAVIAQALTMFGVSLNTDEAYAVLRVHRRAGRGRRRRLWKPN--PLRCTILAEPTHDSAP 1557
            SDLF V   P P++ R G LP H+AP E E+L SW+ +L+A L ++P  LCR  F +D   D  WWRRP   TL  I S+TG+D+  L  MT   W+   +DER +RF     +   +  +R  R+ +C  CL+E  R +L+L W  GWAG CP H   L G+CPSC  AL++  L   +  D + C +C A L      PAH A L LQ AL+ GKRSG   LPRIG LDWPT MAL DVL  M W    G  R Y     R RL   +  DL + E +   IPW+ NYGGLL+LAWLL DLD  L  +IATL T H +RLLAR  +  + +  RLR ILA A+A RP+GRR+W+ W+D+L  S + LRE+++ +RY+ RR+RL  LA +RDGA VE+ A   G++  ++YR L +GA  GLEAALERP     LTGAQAE LG+WIAG R  QSR+A++ +A  +FGV L+ D A  +L  HRRA  GRRRRLW P   P R   +    HD AP
Sbjct:    4 SDLFEVAPAPAPSRDRTG-LPRHVAPIEGESLISWVAALSAVLGMTPRVLCRDAFGVDVRRDSGWWRRPDPSTLKRIESRTGVDVTRLVEMTLCDWAAEPNDERADRFAANRWTAHDSRNARLGRVDVCMQCLSEAPRPHLQLIWTLGWAGACPHHGTTLIGKCPSCGKALWLRGLTGSEPIDFL-CGRCAAPLTHAERLPAHPAVLDLQAALVAGKRSGTTILPRIGALDWPTTMALADVLHAMFWTRHTGKQRGYLAPRQRDRLSAGVCHDLGMIESERRRIPWKENYGGLLLLAWLLGDLDERLSRSIATLLTPHLERLLARFTDFDDVVKIRLRGILAAASAKRPEGRRAWKPWLDSL--SASRLREQSMQDRYKHRRQRLRALAELRDGAPVEAVAALVGVKPHSIYRWLHRGAAGGLEAALERPTGKPALTGAQAEELGKWIAGNRLRQSRQAIVDRAREIFGVDLDLDAASKLLAKHRRAKPGRRRRLWGPKHGPRRAGSI----HDPAP 512          
BLAST of mRNA_P-wetherbeei_contig11378.1.1 vs. uniprot
Match: UPI001F07D795 (TniQ family protein n=1 Tax=Acidibrevibacterium fodinaquatile TaxID=1969806 RepID=UPI001F07D795)

HSP 1 Score: 406 bits (1043), Expect = 1.360e-133
Identity = 236/496 (47.58%), Postives = 298/496 (60.08%), Query Frame = 1
Query:   97 LPLHIAPAEDEALASWIISLAATLKLSPLALCRMVFEIDAAADREWWRRPSADTLSVIGSKTGIDIGVLEAMTFARWSHARDDERPERFDGRYSSVPPAHGSRGRRIRICPMCLAEDARAYLRLFWMTGWAGVCPKHRIALTGRCPSCRGALYVDSLKARQTADLIACRKCGAKLAGGGA-PAHEATLRLQQALIVGKRSGRLALPRIGDLDWPTMMALIDVLLGMVWIGTA---REY-----RRRLFKRIADDLDLGEDQTDSIPWRSNYGGLLILAWLLEDLDAHLRAAIATLHTVHRDRLLARLPNLPEEMSERLRAILAPAAASRPQGRRSWRDWIDTLPESGTDLRERALGERYRLRRRRLFVLAAIRDGATVESAANSAGMRARTVYRLLDQGARNGLEAALERPRRGNKLTGAQAEALGRWIAGARAYQSRKAVIAQALTMFGVSLNTDEAYAVLRVHRRAGRGRRRRLWKPNPLRCTILAEPTHDSAP 1557
            LP H+AP + EAL SW+ +L+  L ++P  LCR  F +D   DREWWRRP    L  I S+TG+D   L  MT   W+   +DE  +RF     +V      R  RI +C  CLAE  R +L+L W  GWAG CP+H  AL+GRCP C  AL +  L   +  D + CR+C A L    + PAH A L LQ AL  GKRSG   LP IG L+WPT MAL DVLL M+W   A   R+Y     R RLF  I  DL + E +   IPW+ NYGGLL LAWLL DL   L   IATL T   + LLA   +    + +RLR ILA A+  RP+G+R+W+ W+D+L  S + LRE+++ +RY+ RR+RL  LA ++DGA VE+ A   G+  R+VYR L +GA  GLEAALERP     LTG QAEA+G+WIAG R  Q+R+A+  +A  MFGV L+ D A  +L  HRRA  GRRRRLW P   R    A   HD AP
Sbjct:   14 LPRHVAPVDGEALISWVAALSTVLGMTPRVLCRDAFGVDVRRDREWWRRPDPPALKRIESRTGVDATRLVEMTLCDWAATPNDEEADRFAANRWTVRENGKVRLGRIDVCTECLAEAPRPHLQLIWTLGWAGACPRHETALSGRCPFCGKALRLRGLTGLEPIDFL-CRRCAAPLTHAESLPAHPAVLDLQAALAAGKRSGTTILPGIGALNWPTTMALADVLLAMLWTRRAKKQRDYLAPRRRDRLFAGICRDLGMTEREWQRIPWKENYGGLLFLAWLLGDLGQRLPRTIATLLTPRLEGLLAPFTDFEAIVKDRLRVILAAASTKRPEGQRAWKPWLDSL--SASHLREQSMQDRYKHRRQRLRALAELKDGALVEAVATLVGVEPRSVYRWLHRGAAGGLEAALERPTGKPALTGVQAEAMGQWIAGDRLRQNRQAIAVRAREMFGVDLDLDAASKLLTKHRRAKPGRRRRLWGPKHGRRR-RAGSIHDPAP 505          
BLAST of mRNA_P-wetherbeei_contig11378.1.1 vs. uniprot
Match: A0A7W5Z8P6_9HYPH (Transposase n=4 Tax=Hyphomicrobiales TaxID=356 RepID=A0A7W5Z8P6_9HYPH)

HSP 1 Score: 404 bits (1039), Expect = 7.020e-133
Identity = 243/517 (47.00%), Postives = 308/517 (59.57%), Query Frame = 1
Query:   43 SDLFAVTVLP-PAQARVGALPLHIAPAEDEALASWIISLAATLKLSPLALCRMVFEIDAAADREWWRRPSADTLSVIGSKTGIDIGVLEAMTFARWSHARDDERPERFDGRYSSVPPAHGSRGRRIRICPMCLAEDARAYLRLFWMTGWAGVCPKHRIALTGRCPSCRGALYVDSLKARQTADLIACRKCGAKLAGG-GAPAHEATLRLQQALIVGKRSGRLALPRIGDLDWPTMMALIDVLLGMVWIGTARE--------YRRRLFKRIADDLDLGEDQTDSIPWRSNYGGLLILAWLLEDLDAHLRAAIATLHTVHRDRLLARLPNLPEEMSERLRAILAPAAASRPQGRRSWRDWIDTLPESGTDLRERALGERYRLRRRRLFVLAAIRDGATVESAANSAGMRARTVYRLLDQGARNGLEAALERPRRGNKLTGAQAEALGRWIAGARAYQSRKAVIAQALTMFGVSLNTDEAYAVLRVHRRAGRGRRRRLWKPN--PLRCTILAEPTHDSAP 1557
            SDLF V+  P PA  R+G LP H+AP E EAL SW+ +++A L ++P   CR    IDA  +  WWRRP++ TL  IGS TG+D+  L  MT   W+ A  D+ P+RF  +  +       R  R+ +C +CLAE  R +LRL W  GW G CP H   LT RCPSC   L +  L A +  DL  C +C A L+     PAH A L LQ ALI GK SG + LP IG LDWPT MAL DVLL MVW    ++         R RLF  I  D+ +     + IPW+ NYGGLL+LAWL  DLD  L  AIATL T   + LL    +  E   +RLRAIL+ A +  PQGRR+W+ W+D L  +  DLRE+A  ERYR RR+RL  LA +RDGA+VE+ A   G+  +T+YR L +GA +GLEAALERP     LT AQAEALG+WIA    +Q+RKAV+ +A    G+ +N D A  ++  HR+  RG+R RLW P   P R    A  THD AP
Sbjct:    4 SDLFEVSASPMPAPGRIG-LPGHVAPVEGEALLSWVAAISAVLGMTPRVFCRDALHIDARQNPGWWRRPASVTLERIGSLTGLDLDHLAGMTLDGWAVAPGDDDPDRFAAKRWTSGTDGRKRLARMDVCTLCLAEARRPHLRLNWTLGWTGACPCHGTVLTSRCPSCGTRLKLRGLNASEPIDLR-CGRCDAVLSDTQNIPAHPAVLALQAALIAGKHSGTVILPGIGALDWPTAMALADVLLAMVWTRRPKKKRDHWAPRQRDRLFAAIGSDMGMAVGAWERIPWKENYGGLLLLAWLFGDLDQRLPRAIATLRTPRLEGLLGPFTDFDEPTRDRLRAILSAARSRSPQGRRAWKPWLDGLVAA--DLREQAARERYRHRRQRLRALAELRDGASVEAVAALVGVDIKTIYRWLHRGAADGLEAALERPTGKPALTSAQAEALGKWIALDHRHQNRKAVLKRARETLGIDINGDAATKLVVKHRKPKRGKRCRLWAPKYGPRRG---AGSTHDPAP 513          
BLAST of mRNA_P-wetherbeei_contig11378.1.1 vs. uniprot
Match: UPI001FE3084B (TniQ family protein n=1 Tax=Bradyrhizobium diversitatis TaxID=2755406 RepID=UPI001FE3084B)

HSP 1 Score: 404 bits (1037), Expect = 1.360e-132
Identity = 239/521 (45.87%), Postives = 307/521 (58.93%), Query Frame = 1
Query:   37 LRSDLFAVTVLP-PAQARVGALPLHIAPAEDEALASWIISLAATLKLSPLALCRMVFEIDAAADREWWRRPSADTLSVIGSKTGIDIGVLEAMTFARWSHARDDERPERFDGRYSSVPPAHGSRGRRIRICPMCLAEDARAYLRLFWMTGWAGVCPKHRIALTGRCPSCRGALYVDSLKARQTADLIACRKCGAKLAG-GGAPAHEATLRLQQALIVGKRSGRLALPRIGDLDWPTMMALIDVLLGMVWIGTA---REY-----RRRLFKRIADDLDLGEDQTDSIPWRSNYGGLLILAWLLEDLDAHLRAAIATLHTVHRDRLLARLPNLPEEMSERLRAILAPAAASRPQGRRSWRDWIDTLPESGTDLRERALGERYRLRRRRLFVLAAIRDGATVESAANSAGMRARTVYRLLDQGARNGLEAALERPRRGNKLTGAQAEALGRWIAGARAYQSRKAVIAQALTMFGVSLNTDEAYAVLRVHRRAGRGRRRRLWKP--NPLRCTILAEPTHDSAPSS 1563
            +RSDLF V+  P P+  R+G LP H+ P E EAL SW   L+  L ++P  LCR  F ID   D EWWRRP+   L  I S+TG+D G L  MT   W+   DDE  +RF  R  +V     +   RI +C +CLA+  R Y+ L W  GW   CP+H +AL+GRC SC  AL +  L   +  DL  C +C A L      PAH A L LQ  L+ GKR+G   LP IG L+WPT +AL DVLL MVW+      R+Y     R RLF  I  D  +   + + + W +NYGGLL+LAWLL DL+  L  AIATL     + LL       + M + LR+ILA   A  P+GRR+W+ W+D+L     DLRE+++ ERY+ RR+RL  LA ++DGA+VE  A   G+  ++VYR L +GA  GLEAAL+RP R   LT AQAEA+G+WIAG R  Q+R+AV  +A   FG+ LN D A  +L  H RA RGRRRRLW P   P +    A  THD AP S
Sbjct:    1 MRSDLFEVSPAPAPSGGRIG-LPGHVVPVEGEALVSWAEGLSTVLSMTPRVLCRDAFGIDIGQDPEWWRRPAPLVLKRIESRTGLDRGRLVEMTLGDWALTSDDEEADRFAARRWTVCKVGKTLPGRIDVCALCLAQAPRPYIPLIWTLGWTAACPRHGVALSGRCQSCGKALRLRGLNGSEPIDLH-CGRCAAPLTNVESLPAHSAVLDLQATLVAGKRNGTTILPGIGALNWPTTVALADVLLAMVWMRRTKKQRDYLVPRRRDRLFASIGRDFGMTRREWEGVSWTTNYGGLLLLAWLLSDLEVRLPRAIATLCAPRLEGLLTPFTGFDDAMKDHLRSILAMVGAKSPEGRRAWKPWLDSL--IAADLREQSMRERYKHRRQRLRALAELKDGASVEIVATLVGVDTKSVYRWLHRGAAGGLEAALDRPTRKPALTSAQAEAMGQWIAGDRLRQNRQAVAERANVAFGIQLNLDVASKLLSKHGRAKRGRRRRLWGPMHGPRQ---RAGSTHDPAPGS 514          
BLAST of mRNA_P-wetherbeei_contig11378.1.1 vs. uniprot
Match: A0A6N7H950_9HYPH (Helix-turn-helix domain-containing protein (Fragment) n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7H950_9HYPH)

HSP 1 Score: 364 bits (934), Expect = 9.020e-117
Identity = 200/424 (47.17%), Postives = 254/424 (59.91%), Query Frame = 1
Query:   34 VLRSDLFAVTVLPPAQARVGALPLHIAPAEDEALASWIISLAATLKLSPLALCRMVFEIDAAADREWWRRPSADTLSVIGSKTGIDIGVLEAMTFARWSHARDDERPERFDGRYSSVPPAHGSRGRRIRICPMCLAEDARAYLRLFWMTGWAGVCPKHRIALTGRCPSCRGALYVDSLKARQTADLIACRKCGAKLAG-GGAPAHEATLRLQQALIVGKRSGRLALPRIGDLDWPTMMALIDVLLGMVWIGTA---REY-----RRRLFKRIADDLDLGEDQTDSIPWRSNYGGLLILAWLLEDLDAHLRAAIATLHTVHRDRLLARLPNLPEEMSERLRAILAPAAASRPQGRRSWRDWIDTLPESGTDLRERALGERYRLRRRRLFVLAAIRDGATVESAANSAGMRARTVYRLLDQGARNG 1278
            +LRSD+F V   P        LP H+AP E EAL SW+  L+A   + P  LCR  F +DA  D +WWR P AD L  + S TG+    L  MT + W+   DDE  +RF       P A  +R RR+ ICP+C+AE  R +L+L WM GW G CP+H + L+G CPSCR  L +  LK     DL+AC +C A+L G GG  AH A L LQ ALI GKRSG   +P +G LDWPT MAL DVLL MVW       R+Y     R RLF  I  DL + + + + +PW  NYGGLL+LAWLL DL+  L  A++TL T   + LL    +L +   ERLR ILA A   RP+GRR+W+ W+  LPES  DLRERAL ERY+ RR+RL  LA ++DGA+VE+ A   G+   +VYR L +  R G
Sbjct:    1 MLRSDMFEVVPAPAPSGGRARLPRHVAPVEGEALISWVAKLSADFDMGPRLLCRDAFGVDARRDPQWWRCPEADVLERMESWTGVSRLRLIDMTLSDWAATMDDEEADRFSASRWRRPKASPTRPRRLDICPLCVAEAPRPHLQLIWMLGWTGACPRHGVVLSGTCPSCRHVLRLRGLKDAGPVDLLACGRCAARLNGTGGFVAHPAVLDLQAALIAGKRSGTTIVPGVGALDWPTTMALADVLLAMVWARRTKKQRDYLAPRRRDRLFASIGRDLGMTQGEWERVPWTRNYGGLLLLAWLLRDLEVRLPRAMSTLCTPRLEGLLNPFTDLDDITKERLRTILAAATVKRPKGRRAWKPWLRILPESADDLRERALHERYKHRRQRLRALAELKDGASVEAVATLVGVTPHSVYRWLHRRRRPG 424          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11378.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001BAA6D780.000e+096.26TniQ family protein n=5 Tax=Bacteria TaxID=2 RepID... [more]
UPI001FFFE9FE8.900e-18758.37TniQ family protein n=1 Tax=Bradyrhizobium sp. 200... [more]
UPI001FDA50787.220e-17356.03TniQ family protein n=1 Tax=Bradyrhizobium sp. NAS... [more]
M5F4U3_9HYPH5.880e-15348.38Uncharacterized protein n=5 Tax=Hyphomicrobiales T... [more]
A0A521QES4_9HYPH1.420e-14148.20Uncharacterized protein n=1 Tax=Reyranella sp. Tax... [more]
UPI0018C1D9F79.980e-14147.58TniQ family protein n=2 Tax=Methylosinus sp. H3A T... [more]
UPI001F07D7951.360e-13347.58TniQ family protein n=1 Tax=Acidibrevibacterium fo... [more]
A0A7W5Z8P6_9HYPH7.020e-13347.00Transposase n=4 Tax=Hyphomicrobiales TaxID=356 Rep... [more]
UPI001FE3084B1.360e-13245.87TniQ family protein n=1 Tax=Bradyrhizobium diversi... [more]
A0A6N7H950_9HYPH9.020e-11747.17Helix-turn-helix domain-containing protein (Fragme... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11378contigP-wetherbeei_contig11378:193..1758 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1297569.MESS2_410034
PFAMsTniQ
Model size1566
Max annot lvl1224|Proteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.65e-154
EggNOG OGs29WUG@1|root,30IFX@2|Bacteria,1NQBW@1224|Proteobacteria,2VEQ0@28211|Alphaproteobacteria
DescriptionEvidence 4 Homologs of previously reported genes of
Cds size1566
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185908.843705-CDS-P-wetherbeei_contig11378:192..17581683185908.843705-CDS-P-wetherbeei_contig11378:192..1758Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11378 193..1758 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11378.1.1prot_P-wetherbeei_contig11378.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11378 193..1758 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11378.1.1

>prot_P-wetherbeei_contig11378.1.1 ID=prot_P-wetherbeei_contig11378.1.1|Name=mRNA_P-wetherbeei_contig11378.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=522bp
VQASSDPPSVVVLRSDLFAVTVLPPAQARVGALPLHIAPAEDEALASWII
SLAATLKLSPLALCRMVFEIDAAADREWWRRPSADTLSVIGSKTGIDIGV
LEAMTFARWSHARDDERPERFDGRYSSVPPAHGSRGRRIRICPMCLAEDA
RAYLRLFWMTGWAGVCPKHRIALTGRCPSCRGALYVDSLKARQTADLIAC
RKCGAKLAGGGAPAHEATLRLQQALIVGKRSGRLALPRIGDLDWPTMMAL
IDVLLGMVWIGTAREYRRRLFKRIADDLDLGEDQTDSIPWRSNYGGLLIL
AWLLEDLDAHLRAAIATLHTVHRDRLLARLPNLPEEMSERLRAILAPAAA
SRPQGRRSWRDWIDTLPESGTDLRERALGERYRLRRRRLFVLAAIRDGAT
VESAANSAGMRARTVYRLLDQGARNGLEAALERPRRGNKLTGAQAEALGR
WIAGARAYQSRKAVIAQALTMFGVSLNTDEAYAVLRVHRRAGRGRRRRLW
KPNPLRCTILAEPTHDSAPSS*
back to top

mRNA from alignment at P-wetherbeei_contig11378:193..1758-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11378.1.1 ID=mRNA_P-wetherbeei_contig11378.1.1|Name=mRNA_P-wetherbeei_contig11378.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1566bp|location=Sequence derived from alignment at P-wetherbeei_contig11378:193..1758- (Phaeothamnion wetherbeei SAG_119_79)
GTGCAAGCTTCATCCGACCCTCCGAGCGTCGTCGTGTTGCGGTCTGATCT GTTTGCGGTGACGGTGCTTCCACCTGCACAGGCAAGAGTTGGTGCACTTC CCCTGCACATTGCTCCGGCGGAGGATGAGGCGCTGGCCTCGTGGATCATC AGCCTGGCTGCCACTCTGAAACTGTCGCCATTGGCGCTGTGTCGTATGGT GTTTGAGATTGACGCGGCCGCCGATCGAGAATGGTGGCGACGCCCGTCCG CCGACACGCTGTCGGTGATTGGCAGCAAAACTGGCATCGACATCGGCGTA CTCGAAGCGATGACGTTCGCGCGCTGGTCTCACGCACGCGACGATGAGCG GCCGGAGCGATTCGACGGCAGGTATTCGTCCGTTCCGCCCGCGCACGGCA GCCGCGGCCGCCGCATACGCATCTGCCCGATGTGCCTGGCCGAAGACGCG CGTGCTTATCTGCGGTTGTTCTGGATGACCGGGTGGGCGGGCGTCTGCCC GAAACATCGCATCGCGCTGACCGGACGCTGTCCGTCCTGCCGAGGCGCGC TCTATGTGGACAGTCTGAAGGCTCGCCAGACGGCGGATCTGATCGCCTGC CGGAAATGCGGAGCGAAGTTGGCAGGCGGTGGTGCTCCCGCCCATGAGGC GACGTTGCGTCTCCAGCAAGCACTTATCGTTGGAAAGCGATCGGGCCGGC TGGCGCTTCCCAGGATTGGTGATCTCGACTGGCCAACAATGATGGCGTTG ATCGACGTATTGCTCGGCATGGTGTGGATTGGTACGGCGAGAGAATATCG TCGCCGGTTGTTCAAACGCATCGCCGATGATCTCGATCTTGGCGAAGACC AGACCGATAGCATCCCGTGGCGCTCGAACTATGGTGGGTTGCTGATCCTC GCATGGTTGCTGGAAGATCTGGATGCGCATCTGCGCGCGGCAATCGCGAC CCTGCATACAGTTCACCGTGATCGGTTGCTGGCCCGCCTCCCGAATCTGC CAGAGGAGATGAGCGAACGACTGCGTGCGATCCTCGCACCAGCCGCCGCG TCGCGCCCACAAGGCCGGAGAAGCTGGCGCGATTGGATCGACACGCTTCC CGAAAGCGGGACCGATCTGCGCGAACGCGCGCTCGGCGAACGCTACAGGC TGAGGCGTCGTCGCTTGTTCGTGCTCGCTGCCATTCGTGATGGTGCTACC GTTGAAAGCGCCGCGAATAGCGCCGGCATGAGAGCGAGGACCGTTTATCG CTTGCTGGATCAAGGCGCTCGAAACGGCCTGGAGGCAGCGTTGGAGCGGC CGCGACGCGGCAATAAATTGACCGGCGCTCAGGCCGAGGCACTGGGACGA TGGATCGCGGGCGCGCGCGCTTATCAGAGCCGCAAGGCCGTGATAGCCCA AGCCTTGACGATGTTCGGTGTCAGCTTGAACACCGACGAGGCGTACGCAG TGCTGCGCGTCCATCGTCGTGCCGGACGGGGACGCCGAAGACGACTCTGG AAGCCCAATCCACTGAGGTGTACGATTCTTGCCGAGCCTACTCATGATTC GGCTCCCAGTTCGTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig11378:193..1758-

>mRNA_P-wetherbeei_contig11378.1.1 ID=mRNA_P-wetherbeei_contig11378.1.1|Name=mRNA_P-wetherbeei_contig11378.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1566bp|location=Sequence derived from alignment at P-wetherbeei_contig11378:193..1758- (Phaeothamnion wetherbeei SAG_119_79)
GTGCAAGCTTCATCCGACCCTCCGAGCGTCGTCGTGTTGCGGTCTGATCT
GTTTGCGGTGACGGTGCTTCCACCTGCACAGGCAAGAGTTGGTGCACTTC
CCCTGCACATTGCTCCGGCGGAGGATGAGGCGCTGGCCTCGTGGATCATC
AGCCTGGCTGCCACTCTGAAACTGTCGCCATTGGCGCTGTGTCGTATGGT
GTTTGAGATTGACGCGGCCGCCGATCGAGAATGGTGGCGACGCCCGTCCG
CCGACACGCTGTCGGTGATTGGCAGCAAAACTGGCATCGACATCGGCGTA
CTCGAAGCGATGACGTTCGCGCGCTGGTCTCACGCACGCGACGATGAGCG
GCCGGAGCGATTCGACGGCAGGTATTCGTCCGTTCCGCCCGCGCACGGCA
GCCGCGGCCGCCGCATACGCATCTGCCCGATGTGCCTGGCCGAAGACGCG
CGTGCTTATCTGCGGTTGTTCTGGATGACCGGGTGGGCGGGCGTCTGCCC
GAAACATCGCATCGCGCTGACCGGACGCTGTCCGTCCTGCCGAGGCGCGC
TCTATGTGGACAGTCTGAAGGCTCGCCAGACGGCGGATCTGATCGCCTGC
CGGAAATGCGGAGCGAAGTTGGCAGGCGGTGGTGCTCCCGCCCATGAGGC
GACGTTGCGTCTCCAGCAAGCACTTATCGTTGGAAAGCGATCGGGCCGGC
TGGCGCTTCCCAGGATTGGTGATCTCGACTGGCCAACAATGATGGCGTTG
ATCGACGTATTGCTCGGCATGGTGTGGATTGGTACGGCGAGAGAATATCG
TCGCCGGTTGTTCAAACGCATCGCCGATGATCTCGATCTTGGCGAAGACC
AGACCGATAGCATCCCGTGGCGCTCGAACTATGGTGGGTTGCTGATCCTC
GCATGGTTGCTGGAAGATCTGGATGCGCATCTGCGCGCGGCAATCGCGAC
CCTGCATACAGTTCACCGTGATCGGTTGCTGGCCCGCCTCCCGAATCTGC
CAGAGGAGATGAGCGAACGACTGCGTGCGATCCTCGCACCAGCCGCCGCG
TCGCGCCCACAAGGCCGGAGAAGCTGGCGCGATTGGATCGACACGCTTCC
CGAAAGCGGGACCGATCTGCGCGAACGCGCGCTCGGCGAACGCTACAGGC
TGAGGCGTCGTCGCTTGTTCGTGCTCGCTGCCATTCGTGATGGTGCTACC
GTTGAAAGCGCCGCGAATAGCGCCGGCATGAGAGCGAGGACCGTTTATCG
CTTGCTGGATCAAGGCGCTCGAAACGGCCTGGAGGCAGCGTTGGAGCGGC
CGCGACGCGGCAATAAATTGACCGGCGCTCAGGCCGAGGCACTGGGACGA
TGGATCGCGGGCGCGCGCGCTTATCAGAGCCGCAAGGCCGTGATAGCCCA
AGCCTTGACGATGTTCGGTGTCAGCTTGAACACCGACGAGGCGTACGCAG
TGCTGCGCGTCCATCGTCGTGCCGGACGGGGACGCCGAAGACGACTCTGG
AAGCCCAATCCACTGAGGTGTACGATTCTTGCCGAGCCTACTCATGATTC
GGCTCCCAGTTCGTGA
back to top