mRNA_P-wetherbeei_contig11377.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11377.1.1
Unique NamemRNA_P-wetherbeei_contig11377.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11377.1.1 vs. uniprot
Match: A0A7S1ZIM0_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZIM0_TRICV)

HSP 1 Score: 73.9 bits (180), Expect = 4.000e-13
Identity = 47/104 (45.19%), Postives = 58/104 (55.77%), Query Frame = 1 
Query:   16 NPLLQAIDVLERRFMLALNRGQAHAAAAAASDRECWRHLRRARTQEAALMAAVSNLEDHADSLRRQFEALWNAVGEQSGRHEAMLAGFEGDVAALGRVPLHPAL 327
            +PL QA++V ERRFML L RG+A A AA      C   +        AL AAVSNL DH +   R      +   +++  H  +L GFEG VAAL  VPLHPAL
Sbjct:   85 SPLHQALEVYERRFMLHLCRGRALADAAELRIESCRECVSERAVMARALRAAVSNLADHRNGAARTRAEFASTFRDRTASHARLLGGFEGHVAALADVPLHPAL 188
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BLAST of mRNA_P-wetherbeei_contig11377.1.1 vs. uniprot
Match: A0A7S3K2G4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K2G4_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 6.490e-9
Identity = 37/109 (33.94%), Postives = 57/109 (52.29%), Query Frame = 1 
Query:    1 AAAESNPLLQAIDVLERRFMLALNRGQAHAAAAAASDRECWRHLRRARTQEAALMAAVSNLEDHADSLRRQFEALWNAVGEQSGRHEAMLAGFEGDVAALGRVPLHPAL 327
            ++ +  PL +A+   E  F L L +GQA+A         C +   R R +  AL AA+ NL DHA++L    ++L       S   + +L  FEGD+ AL ++ +HPAL
Sbjct:  132 SSVQFGPLQRALTDFENSFRLRLAQGQAYAHRCKIRADSCVQIQERQRVRNRALSAAIQNLRDHANALASAHDSLVTRAERHSNAQKELLMRFEGDLEALSKISMHPAL 240
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BLAST of mRNA_P-wetherbeei_contig11377.1.1 vs. uniprot
Match: A0A7S2BQH5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BQH5_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 8.820e-5
Identity = 37/105 (35.24%), Postives = 52/105 (49.52%), Query Frame = 1 
Query:   19 PLLQAIDVLERRFMLALNRGQAHAAAAAASDREC--WRHLRRARTQEAALMAAVSNLEDHADSLRRQFEALWNAVGEQSGRHEAMLAGFEGDVAALGRVPLHPAL 327
            PL   +   ER+FML LN  Q++   A    + C  W   R    Q  A  AAVSNLEDH +S++  +E     + +Q  +   +L  FE  +  L  +PLHP L
Sbjct:   69 PLQATLLDYERQFMLLLNIFQSYERRAVERSKACEDWGACRE--RQAKAHQAAVSNLEDHLNSVKTDYEGTLQKLRQQHEKGARLLDNFEEVLDQLDAIPLHPNL 171
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11377.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S1ZIM0_TRICV4.000e-1345.19Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S3K2G4_9STRA6.490e-933.94Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2BQH5_9STRA8.820e-535.24Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11377contigP-wetherbeei_contig11377:58..384 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog36331.EPrPI00000015900
PFAMsAPG17,ATG11
Model size327
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.46e-09
EggNOG OGs28MXS@1|root,2QUG9@2759|Eukaryota,1ME3A@121069|Pythiales
Ec32 ortholog descriptionAutophagy-related protein 11
Ec32 orthologEc-07_007840.1
Descriptionfunction. Source PGD
Cds size327
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185908.81508-CDS-P-wetherbeei_contig11377:57..3841683185908.81508-CDS-P-wetherbeei_contig11377:57..384Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11377 58..384 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11377.1.1prot_P-wetherbeei_contig11377.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11377 58..384 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11377.1.1

>prot_P-wetherbeei_contig11377.1.1 ID=prot_P-wetherbeei_contig11377.1.1|Name=mRNA_P-wetherbeei_contig11377.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=109bp
AAAESNPLLQAIDVLERRFMLALNRGQAHAAAAAASDRECWRHLRRARTQ
EAALMAAVSNLEDHADSLRRQFEALWNAVGEQSGRHEAMLAGFEGDVAAL
GRVPLHPAL
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mRNA from alignment at P-wetherbeei_contig11377:58..384+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11377.1.1 ID=mRNA_P-wetherbeei_contig11377.1.1|Name=mRNA_P-wetherbeei_contig11377.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig11377:58..384+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGCGGCGGAATCCAACCCGCTGCTACAGGCCATCGATGTCCTCGAGCG
GCGCTTTATGCTGGCGCTTAACCGCGGCCAGGCGCACGCCGCAGCAGCCG
CCGCCAGCGACCGAGAGTGCTGGCGGCACCTGCGGCGGGCGCGCACACAG
GAGGCGGCGCTGATGGCGGCCGTCTCCAACCTGGAGGACCATGCTGATTC
GCTGCGGCGCCAGTTCGAGGCGCTCTGGAATGCGGTCGGGGAGCAGTCGG
GCCGCCACGAAGCCATGCTGGCTGGCTTTGAAGGGGATGTGGCGGCGCTG
GGCCGGGTGCCGCTCCACCCCGCGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11377:58..384+

>mRNA_P-wetherbeei_contig11377.1.1 ID=mRNA_P-wetherbeei_contig11377.1.1|Name=mRNA_P-wetherbeei_contig11377.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig11377:58..384+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGCGGCGGAATCCAACCCGCTGCTACAGGCCATCGATGTCCTCGAGCG
GCGCTTTATGCTGGCGCTTAACCGCGGCCAGGCGCACGCCGCAGCAGCCG
CCGCCAGCGACCGAGAGTGCTGGCGGCACCTGCGGCGGGCGCGCACACAG
GAGGCGGCGCTGATGGCGGCCGTCTCCAACCTGGAGGACCATGCTGATTC
GCTGCGGCGCCAGTTCGAGGCGCTCTGGAATGCGGTCGGGGAGCAGTCGG
GCCGCCACGAAGCCATGCTGGCTGGCTTTGAAGGGGATGTGGCGGCGCTG
GGCCGGGTGCCGCTCCACCCCGCGCTG
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