mRNA_P-wetherbeei_contig11373.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11373.1.1
Unique NamemRNA_P-wetherbeei_contig11373.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11373.1.1 vs. uniprot
Match: A0A7S2WG81_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WG81_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.100e-17
Identity = 48/103 (46.60%), Postives = 71/103 (68.93%), Query Frame = 1 
Query:    1 VNLVVTLRGKRYDVKAASSVSDVQDEVERVAGLAKEKQALLFKGRKLDADAKLSDVGVGDGDVINVVP-NSKKAKGRDDVGSPPASTVGIGVGVNGESDEAEG 306
            +N+V TLRGK++DV AAS+V ++++ +E  AG+ +++Q++LFKG+KLDAD  L D GV +GD INVVP  + KA  R      P+ T G+G+    + DE EG
Sbjct:   29 LNVVCTLRGKKFDV-AASNVQEIREALEAKAGIEQDRQSVLFKGKKLDADQILEDAGVSEGDTINVVPLKAPKAASR------PSETSGLGIDDEDDGDEEEG 124
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BLAST of mRNA_P-wetherbeei_contig11373.1.1 vs. uniprot
Match: A0A836CH29_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH29_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.850e-15
Identity = 50/102 (49.02%), Postives = 63/102 (61.76%), Query Frame = 1 
Query:    1 VNLVVTLRGKRYDVKAASSVSDVQDEVERVAGLAKEKQALLFKGRKLDADAKLSDVGVGDGDVINVVPNSKKAKGRDDVGSPPASTVGIGVGVNGESDEAEG 306
            +N+VVTLRGK+Y V + SSVSD+Q EV+  AGL+ E+Q++LFKG+ L A   LS VGV DGD INVVP+ K    R         T   GV  +G  D   G
Sbjct:   25 LNVVVTLRGKKYQV-SGSSVSDIQAEVQEKAGLSAEQQSVLFKGKLLAAGDDLSTVGVSDGDTINVVPSKKPKAER---------TAAAGVDADGTVDAPGG 116
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BLAST of mRNA_P-wetherbeei_contig11373.1.1 vs. uniprot
Match: W7T2R4_9STRA (Ubiquitin-like domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T2R4_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 3.030e-11
Identity = 36/68 (52.94%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:    1 VNLVVTLRGKRYDVKAASSVSDVQDEVERVAGLAKEKQALLFKGRKLDADAKLSDVGVGDGDVINVVP 204
            VN+VVTLRGK+YD+ +A SV D+Q ++E  +GL   +QA+LFKG++L A   LS  GV +GD +N+VP
Sbjct:   32 VNVVVTLRGKKYDL-SAESVQDIQAQMEGKSGLKPGQQAILFKGKQLGASESLSAAGVVEGDTLNIVP 98
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BLAST of mRNA_P-wetherbeei_contig11373.1.1 vs. uniprot
Match: A0A7S2XZE7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZE7_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.220e-6
Identity = 28/64 (43.75%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:   10 VVTLRGKRYDVKAASSVSDVQDEVERVAGLAKEKQALLFKGRKLDADAKLSDVGVGDGDVINVV 201
            V+T++G+R+++  A++V DVQ +++   GL    QA+LFKGR L  +  L + GV +GD INVV
Sbjct:   28 VITMKGQRFEI-TATTVGDVQRQIQAKTGLYTAAQAVLFKGRMLAEEDDLQEEGVEEGDYINVV 90
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BLAST of mRNA_P-wetherbeei_contig11373.1.1 vs. uniprot
Match: A0A7S1D1N7_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D1N7_CYCTE)

HSP 1 Score: 54.7 bits (130), Expect = 3.960e-6
Identity = 30/72 (41.67%), Postives = 46/72 (63.89%), Query Frame = 1 
Query:    4 NLVVTLRGKRYDVKAASSVSDVQDEVERVAGLAKEKQALLFKGRKLDADAKLSDVGVGDGDVINVVPNSKKA 219
            N+ VTLRGK++DV  A +  DV  ++++ AG+   +  LLF G++L  D  L +VGV +GD + +VP S  A
Sbjct:    8 NIQVTLRGKKFDVDEAVTAKDVLGKMQKSAGVGDGR--LLFDGKQLALDDSLEEVGVKEGDSLQMVPGSSTA 77
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11373.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7S2WG81_9STRA1.100e-1746.60Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A836CH29_9STRA1.850e-1549.02Ubiquitin-like domain-containing protein n=1 Tax=T... [more]
W7T2R4_9STRA3.030e-1152.94Ubiquitin-like domain-containing protein n=2 Tax=M... [more]
A0A7S2XZE7_9STRA1.220e-643.75Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S1D1N7_CYCTE3.960e-641.67Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11373contigP-wetherbeei_contig11373:18..434 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LE10
PFAMsUBA,ubiquitin
Model size417
Max annot lvl2759|Eukaryota
KEGG koko:K04523
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.13e-17
EggNOG OGsCOG5272@1|root,KOG0010@2759|Eukaryota
Descriptionnegative regulation of store-operated calcium channel activity
Cds size417
COG categoryO
BRITEko00000,ko00001,ko03051,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185908.7767847-CDS-P-wetherbeei_contig11373:17..4341683185908.7767847-CDS-P-wetherbeei_contig11373:17..434Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11373 18..434 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11373.1.1prot_P-wetherbeei_contig11373.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11373 18..434 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11373.1.1

>prot_P-wetherbeei_contig11373.1.1 ID=prot_P-wetherbeei_contig11373.1.1|Name=mRNA_P-wetherbeei_contig11373.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=139bp
VNLVVTLRGKRYDVKAASSVSDVQDEVERVAGLAKEKQALLFKGRKLDAD
AKLSDVGVGDGDVINVVPNSKKAKGRDDVGSPPASTVGIGVGVNGESDEA
EGIDDADGAPAGMAGLGSLGGLGGLGGLGGLGGLGGLGG
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mRNA from alignment at P-wetherbeei_contig11373:18..434-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11373.1.1 ID=mRNA_P-wetherbeei_contig11373.1.1|Name=mRNA_P-wetherbeei_contig11373.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=417bp|location=Sequence derived from alignment at P-wetherbeei_contig11373:18..434- (Phaeothamnion wetherbeei SAG_119_79)
GTGAACCTGGTCGTCACGCTGCGTGGCAAGCGGTACGATGTCAAGGCCGC
CAGCTCCGTGTCGGACGTGCAAGATGAGGTGGAGCGCGTCGCAGGGCTGG
CCAAGGAGAAGCAGGCGCTCCTCTTCAAGGGCCGCAAGCTCGACGCCGAC
GCGAAGCTCAGCGACGTCGGCGTCGGTGACGGCGACGTGATCAACGTCGT
CCCGAACAGCAAGAAGGCGAAGGGCAGGGACGATGTCGGCAGCCCGCCTG
CCTCGACCGTCGGCATTGGCGTGGGCGTCAACGGCGAGAGCGATGAGGCG
GAGGGAATCGACGACGCCGACGGAGCTCCCGCGGGGATGGCCGGCCTGGG
AAGTCTGGGCGGACTGGGCGGCTTGGGCGGCCTCGGTGGGTTGGGCGGTC
TGGGCGGCCTGGGAGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11373:18..434-

>mRNA_P-wetherbeei_contig11373.1.1 ID=mRNA_P-wetherbeei_contig11373.1.1|Name=mRNA_P-wetherbeei_contig11373.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=417bp|location=Sequence derived from alignment at P-wetherbeei_contig11373:18..434- (Phaeothamnion wetherbeei SAG_119_79)
GTGAACCTGGTCGTCACGCTGCGTGGCAAGCGGTACGATGTCAAGGCCGC
CAGCTCCGTGTCGGACGTGCAAGATGAGGTGGAGCGCGTCGCAGGGCTGG
CCAAGGAGAAGCAGGCGCTCCTCTTCAAGGGCCGCAAGCTCGACGCCGAC
GCGAAGCTCAGCGACGTCGGCGTCGGTGACGGCGACGTGATCAACGTCGT
CCCGAACAGCAAGAAGGCGAAGGGCAGGGACGATGTCGGCAGCCCGCCTG
CCTCGACCGTCGGCATTGGCGTGGGCGTCAACGGCGAGAGCGATGAGGCG
GAGGGAATCGACGACGCCGACGGAGCTCCCGCGGGGATGGCCGGCCTGGG
AAGTCTGGGCGGACTGGGCGGCTTGGGCGGCCTCGGTGGGTTGGGCGGTC
TGGGCGGCCTGGGAGGG
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