mRNA_P-wetherbeei_contig11370.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11370.3.1
Unique NamemRNA_P-wetherbeei_contig11370.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11370.3.1 vs. uniprot
Match: A0A835Z151_9STRA (Peroxin-3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z151_9STRA)

HSP 1 Score: 218 bits (555), Expect = 2.410e-63
Identity = 153/327 (46.79%), Postives = 194/327 (59.33%), Query Frame = 3
Query:   57 RFARRHRRALVIGGLAGAAVAGYWRVRSLLHEAEALQRALRLRALEEDRYRRYQARAKTECLTAVVNFLPTLRKRLFETVDVNGPVRELKQLRRVSRSPGGNSGCGXXXXXXXXXXGDGHESP-EEDPREAELWEEVKVTGLVRLMTALYVFSALNLMLRLQLHILGRHSFEEWLHMFRADVAAGEGPPATAPPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVPTGVSMEARHTFLSSTYEYLLGDGLRALAADVRRAVKLRTAHWRMDKVGAICYTDFVEVLREVRLEMERPAEPAGATAAAGDA-ASTPPLLQYFINPRD 1031
            RFA RHRRA+ +  +A AAV  Y +V++ L EAEA+Q     R+ +E R+R Y  RA+ EC TA++NFLPTLR RL+ T D++ PVR LK LR+   +     G G          GD    P EEDP EAELW+EVKVT   RL+ ++Y FSALNLMLRLQ+HILGR+S+EE   + + +    + P                          XXXXXXXXXX   V   + M+AR  FLSSTYE+LLGDGLRALAADV  AV+  +A W      A+ + +   +LR VR E+E      GA AAAGDA A+  PLL+Y INP D
Sbjct:   14 RFAHRHRRAIALSCVAAAAVTCYCKVQAALKEAEAIQAEFAERSAKERRFRLYLGRARAECRTAILNFLPTLRSRLYATADISRPVRALKALRQSRDAAASAQGEG----------GDPAPPPSEEDPAEAELWDEVKVTSFTRLLLSMYAFSALNLMLRLQMHILGRYSYEEASELLKREAGQKQQP------------------------GTXXXXXXXXXXERGVGASLPMDARRAFLSSTYEFLLGDGLRALAADVEAAVRTCSADWHCQSKLAVGWEELAGMLRRVRAEVEGGV--GGAAAAAGDAQAAQDPLLRYIINPID 304          
BLAST of mRNA_P-wetherbeei_contig11370.3.1 vs. uniprot
Match: A0A6H5L882_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L882_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 4.770e-47
Identity = 152/389 (39.07%), Postives = 191/389 (49.10%), Query Frame = 3
Query:   18 MLQAIGGAAQAVGRFARRHRRALVIGGLAGAAVAGYWRVRSLLHEAEALQRALRLRALEEDRYRRYQARAKTECLTAVVNFLPTLRKRLFETVDVNGPVRELKQLRR------------VSRSPGGNSGCGXXXXXXXXXX----GDGHESPEEDP---REAELWEEVKVTGLVRLMTALYVFSALNLMLRLQLHILGRHSFEEWLHMFRA-----DVAAGE----------GPPAT-APPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVPTGVSMEARHTFLSSTYEYLLGDGLRALAADVRRAVKLRTAHWRMDKVGAICYTDFVEVLREVRLEMERPAEPA----------GATAAAGDAASTPP------LLQYFINPRD 1031
            M +A G AA+A GRFARRHRRA+V+GG+ GAA   Y  ++  L EAE    A+ ++A  + R R+  +R + EC+ A+ NFLP LRKRLF  VDV GPVRELK LR                  GG     XXXXXXXXXX     DG  + E +    RE ELWE+VKVT L RL+ +LY F+AL LML +QLHILGR S EE   +        D+  G           G P T + P                                     +SME RH+ LS+TYE++LGDGLR L  DV RAV   T  W+      + + D V V+R VR E+E P   +          G   A G+            LL+Y INP D
Sbjct:    1 MWKAAGDAARAAGRFARRHRRAIVVGGVVGAAACVYHSMKRALREAEDEHAAMLVQAGRDARRRQCMSRTRGECVAALANFLPALRKRLFLAVDVTGPVRELKALRTGMTGATAXXXXXXXXXXGGXXXXXXXXXXXXXXXXXAVADGSAAAEAEDLQSREVELWEQVKVTALTRLVVSLYAFNALALMLHMQLHILGRLSLEESQELLLRTSNDDDITPGSSTETAASLPHGNPGTMSSPSPLTTTTRNGVPAPPAAVRLGAGASDWSGGAVTAGLALSMEGRHSLLSATYEHVLGDGLRTLVRDVERAVSRCTCSWKAHTRQQVEFQDLVAVIRRVRREVEGPIGGSAYYGGGGDFNGVGGAVGEGLGRSSGIRHALLLRYIINPSD 389          
BLAST of mRNA_P-wetherbeei_contig11370.3.1 vs. uniprot
Match: D7FTT6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT6_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 5.410e-32
Identity = 96/196 (48.98%), Postives = 118/196 (60.20%), Query Frame = 3
Query:   18 MLQAIGGAAQAVGRFARRHRRALVIGGLAGAAVAGYWRVRSLLHEAEALQRALRLRALEEDRYRRYQARAKTECLTAVVNFLPTLRKRLFETVDVNGPVRELKQLRR---------------VSRSPGGNSGCGXXXXXXXXXXGDGHESPEEDP---REAELWEEVKVTGLVRLMTALYVFSALNLMLRLQLHIL 551
            M QA G AA+A GRFARRHRRA+V+GG+ GAA   Y  ++  L EAE    A+ ++A  + R R+  +R + EC+ A+ NFLP LRKRLF  VDV GPVRELK LR                            XXXXXXXXX  DG  + E +    RE ELWE+VKVT L RL+ +LY F+AL LML +QLHIL
Sbjct:    1 MWQAAGDAARAAGRFARRHRRAIVVGGVVGAAACVYHSMKRALKEAEDEHAAMLVQAGHDARRRQCMSRTRGECVAALANFLPALRKRLFLAVDVTGPVRELKALRTGLAGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVADGSAAAEAEDLQSREVELWEQVKVTALTRLVVSLYAFNALALMLHMQLHIL 196          
BLAST of mRNA_P-wetherbeei_contig11370.3.1 vs. uniprot
Match: W7TYS6_9STRA (Peroxisomal biogenesis factor 3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYS6_9STRA)

HSP 1 Score: 117 bits (293), Expect = 6.570e-26
Identity = 104/338 (30.77%), Postives = 152/338 (44.97%), Query Frame = 3
Query:   36 GAAQAVGRFARRHRRALVIGGLAGAAVAGY--WRVRSLLHEAEALQRALRLRALEEDRYRRYQARAKTECLTAVVNFLPTLRKRLFETVDVNGPVRELKQLRRVSRSPGGNSGCGXXXXXXXXXXGDGHESPEEDPREAELWEEVKVTGLVRLMTALYVFSALNLMLRLQLHILGRHSFE----EWLHMFRADVAAGEGPPATAPPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVPTGVSM---EARHTFLSSTYEYLLGDGLRALAADVRRAVKLRTAHWRMDKVGAICYTDFVEVLREVRLEMERPAEPAGATAAAGDAASTPPLLQYFIN 1022
            G  Q V  F +R+RRA  IG +AGA+ AG+  WR++ +L + + + R   L  L++ R + +  R++ EC+ A++NF+ TLRKR++E VDV  PV+ LK                          G G  S +E   E  LW +VKV+G  R   A Y F+ LN+MLR+Q+HILGR++FE    E L   + D   G+GP                                         TG S    + R   LS  YE+ LG+GLR L   V  AV+     W +     + Y +  + L  +R  +E P          G   +  PLLQY ++
Sbjct:    2 GRLQQVYHFLKRNRRA--IGLIAGASAAGFAAWRIKRVLDDYKRIIREHDLARLDQHRLQMHMLRSRGECVPALLNFMQTLRKRVYEIVDVTSPVKALKA-------------------------GRGGLSKQE---EQALWHQVKVSGFSRFFLAYYGFNLLNVMLRVQVHILGRYAFEASRQEMLQAAQRDQEEGQGP---------------------------RGEFCSLGDAGYAATGSSSFGSDDRCRLLSLVYEHFLGEGLRRLKEAVEVAVREELGAWSVHAKIHVDYAELHDALMRIRRRLEGP---------RGVLLAESPLLQYVLD 273          
BLAST of mRNA_P-wetherbeei_contig11370.3.1 vs. uniprot
Match: K8YNM0_NANGC (Peroxin-3 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YNM0_NANGC)

HSP 1 Score: 102 bits (255), Expect = 2.180e-22
Identity = 75/200 (37.50%), Postives = 110/200 (55.00%), Query Frame = 3
Query:   36 GAAQAVGRFARRHRRALVIGGLAGAAVAGY--WRVRSLLHEAEALQRALRLRALEEDRYRRYQARAKTECLTAVVNFLPTLRKRLFETVDVNGPVRELKQLRRVSRSPGGNSGCGXXXXXXXXXXGDGHESPEEDPREAELWEEVKVTGLVRLMTALYVFSALNLMLRLQLHILGRHSFE----EWLHMFRADVAAGEGP 617
            G  Q V  F +R+RRA  IG +AGA+ AG+  WR++ +L + + + R   L  L++ R + +  R++ EC+ A++NF+ TLRKR++E VDV  PV+ LK                          G G  S +E   E  LW +VKV+G  R   A Y F+ LN+MLR+Q+HILGR++FE    E L   + D   G+GP
Sbjct:    2 GRLQQVYHFLKRNRRA--IGLIAGASAAGFAAWRIKRVLDDYKRIIREHDLARLDQHRLQMHMLRSRGECVPALLNFMQTLRKRVYEIVDVTSPVKALKA-------------------------GRGGLSKQE---EQALWHQVKVSGFSRFFLAYYGFNLLNVMLRVQVHILGRYAFEASRQEMLQAAQRDQEEGQGP 171          
BLAST of mRNA_P-wetherbeei_contig11370.3.1 vs. uniprot
Match: A0A2R5G1R0_9STRA (Peroxisomal biosis factor 3 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G1R0_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 6.410e-13
Identity = 70/302 (23.18%), Postives = 129/302 (42.72%), Query Frame = 3
Query:   60 FARRHRRALV-IGGLAGAAVAGYWRVRSL----LHEAEALQRALRLRALEEDRYRRYQARAKTECLTAVVNFLPTLRKRLFETVDVNGPVRELKQLRRVSRSPGGNSGCGXXXXXXXXXXGDGHESPEEDPREAELWEEVKVTGLVRLMTALYVFSALNLMLRLQLHILGRHSFEEWLHMFRADVAAGEGPPATAPPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVPTG-VSMEARHTFLSSTYEYLL--GDGLRALAADVRRAVKLRTAHWRMDKVGAICYTDFVEVLREVRLEME 941
            F + H++  + +G +    V GY+  + +    + + E L R L+ + +E        AR + EC + ++ F+P LR  + +  D       LK +R   ++                   +G  S +++    +LW+E+KV  L RL+ ++Y    LN +LR+QLHILGR++FEE +   RA+ AA       A  +                                  TG VS   R +FL S  ++ +  G G+  +   ++ +++  T  W M     +   D + ++ ++R E+E
Sbjct:   11 FLKWHKKKFIALGSVTALGVGGYYYAKRMVLDGMRQVEELGRGLQEKMMETQYRESELARVRAECGSMILTFVPPLRNMVKKLTDPKPVTERLKAVRLKRKN-------------------EGMPSAQDEEEVMQLWDELKVISLARLIVSIYALGLLNCVLRIQLHILGRYAFEEAISQRRAEAAASSETADAAGVKQLEAGVEGAASASHVSEES---------------TGLVSQRLRESFLFSGSDHFMNSGSGMETMLYHIQESIQRATKDWHMGTDATVNRWDILNMIDKIREEVE 278          
BLAST of mRNA_P-wetherbeei_contig11370.3.1 vs. uniprot
Match: A0A7S2SEF3_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SEF3_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.810e-12
Identity = 72/305 (23.61%), Postives = 129/305 (42.30%), Query Frame = 3
Query:   60 FARRHRRALVIGGLAGAA-VAGYWRVRSL----LHEAEALQRALRLRALEEDRYRRYQARAKTECLTAVVNFLPTLRKRLFETVDVNGPVRELKQLR-RVSRSPGGNSGCGXXXXXXXXXXGDGHESPEEDPREAELWEEVKVTGLVRLMTALYVFSALNLMLRLQLHILGRHSFEEWLHMFRADVAAGEGPPATAPPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVP--TGVSMEARHTFLSSTYEYLL--GDGLRALAADVRRAVKLRTAHWRMDKVGAICYTDFVEVLREVRLEMER 944
            F + H++  +  G+ GAA V GY+  + +    + + E L R  + + +E    +    R ++EC   ++ F+P LR  + +  D      +LK +R R+  S                       SP E+    +LW+E+KV  L RL+ ++Y  + LN +LR+QLHILGR+SFEE    FR +V+                                           + P  T ++ + R  FL +  ++L+  GDG++ L   +   +   T  W M     +   D ++++  +R  +E+
Sbjct:   11 FLKWHKKKFIALGVVGAASVGGYYYAKRMVLDGMRQVEELGRGFQEKFMETQHRKSELLRIRSECSRMILTFIPPLRSMVKQLTDPKPVTEKLKNVRLRIKNSVAS--------------------SPVEEEEVQQLWDELKVVSLTRLLASIYTLALLNNLLRVQLHILGRYSFEESSE-FRREVSQ-------------------------LSLDAQKRGIEDAITEEISPEHTKITRKVRERFLFAGSDHLMNTGDGMKVLVKHIHDCISFGTKDWLMGTDATVTRQDILKMVVSIREAIEK 269          
BLAST of mRNA_P-wetherbeei_contig11370.3.1 vs. uniprot
Match: A0A225WFR2_9STRA (Uncharacterized protein n=16 Tax=Phytophthora TaxID=4783 RepID=A0A225WFR2_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.180e-8
Identity = 55/187 (29.41%), Postives = 87/187 (46.52%), Query Frame = 3
Query:   18 MLQAIGGAAQAVGRFARRHRRALVIGGLAGAAVAG--YWRVRSLLHEAEALQRALRLRALEEDRYRRYQARAKTECLTAVVNFLPTLRKRLFETVDVNGPVRELKQLRRVSRSPGGNSGCGXXXXXXXXXXGDGHESPEEDPREAELWEEVKVTGLVRLMTALYVFSALNLMLRLQLHILGRHSFEE 572
            M  A+  A QA   FARRH++ L++ G+ GAA AG  Y+  R +L EAE     ++ +  E  R +        E    V  FLP L+ RL++ +D+   V+ELK L +  ++                             +  ELWE+ K+    R +TAL  F   +L++  Q+ I+G+  FE+
Sbjct:    1 MWSALQHAKQAACGFARRHKKLLIVTGV-GAACAGGAYYAYRRVLGEAERFSLQIQEQMAEHQRLQLALGSTADESRATVRRFLPRLKTRLYQLLDLESVVQELKTLDKTQKN-----------------------------KRNELWEDAKLLAFTRYLTALVAFGLWHLLVFAQVSIIGKRVFEK 157          
BLAST of mRNA_P-wetherbeei_contig11370.3.1 vs. uniprot
Match: A0A3F2RIV6_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RIV6_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.210e-8
Identity = 53/187 (28.34%), Postives = 89/187 (47.59%), Query Frame = 3
Query:   18 MLQAIGGAAQAVGRFARRHRRALVIGGLAGAAVAG--YWRVRSLLHEAEALQRALRLRALEEDRYRRYQARAKTECLTAVVNFLPTLRKRLFETVDVNGPVRELKQLRRVSRSPGGNSGCGXXXXXXXXXXGDGHESPEEDPREAELWEEVKVTGLVRLMTALYVFSALNLMLRLQLHILGRHSFEE 572
            M  A+  A +A   FARRH++ L++ G+ GAA AG  Y+  R +L EAE   + ++++  E  R +        E    V  FLP L+ RL++ +D+   V+ELK L +  ++                             R   LWE+ K+  + R +TAL  F   +L++  Q+ ++G+  FE+
Sbjct:    1 MWSALQHAKEAACGFARRHKKLLIVTGV-GAACAGGAYYAYRRMLSEAERFTQQIQVQMAEHQRLQLALGSTADESRATVRRFLPRLKTRLYQLLDLESVVQELKTLDKTQKT-----------------------------RRNALWEDAKLLTVTRYLTALVAFGLWHLLVFAQVSVIGKRVFEK 157          
BLAST of mRNA_P-wetherbeei_contig11370.3.1 vs. uniprot
Match: D7FTT5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT5_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 1.290e-8
Identity = 44/113 (38.94%), Postives = 55/113 (48.67%), Query Frame = 3
Query:  753 MEARHTFLSSTYEYLLGDGLRALAADVRRAVKLRTAHWRMDKVGAICYTDFVEVLREVRLEMERP--------------------AEPAGATAAAGDAASTPPLLQYFINPRD 1031
            MEARH+ LSSTYE++LG GLRAL  DV RAV   T  W+      + + D V V+R VR E+E P                     E  G ++    A     LL+Y INP D
Sbjct:    1 MEARHSLLSSTYEHVLGGGLRALVRDVERAVSRCTCSWKAHTRQQVEFQDLVAVIRRVRREVEGPIGGSAYYGGXXXXXXXXXAVGEGLGRSSGVRHAL----LLRYIINPSD 109          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11370.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A835Z151_9STRA2.410e-6346.79Peroxin-3 n=1 Tax=Tribonema minus TaxID=303371 Rep... [more]
A0A6H5L882_9PHAE4.770e-4739.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTT6_ECTSI5.410e-3248.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7TYS6_9STRA6.570e-2630.77Peroxisomal biogenesis factor 3 n=2 Tax=Monodopsid... [more]
K8YNM0_NANGC2.180e-2237.50Peroxin-3 n=1 Tax=Nannochloropsis gaditana (strain... [more]
A0A2R5G1R0_9STRA6.410e-1323.18Peroxisomal biosis factor 3 n=1 Tax=Hondaea fermen... [more]
A0A7S2SEF3_9STRA1.810e-1223.61Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A225WFR2_9STRA1.180e-829.41Uncharacterized protein n=16 Tax=Phytophthora TaxI... [more]
A0A3F2RIV6_9STRA1.210e-828.34Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
D7FTT5_ECTSI1.290e-838.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11370contigP-wetherbeei_contig11370:1021..2063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog164328.Phyra80388
Model size1043
Max annot lvl4776|Peronosporales
Hectar predicted targeting categorymitochondrion
Exons1
Evalue3.02e-11
EggNOG OGsKOG4444@1|root,KOG4444@2759|Eukaryota,3QIVA@4776|Peronosporales
Ec32 ortholog descriptionPeroxin-3 domain
Ec32 orthologEc-25_001480.1
DescriptionPeroxin-3
Cds size1026
COG categoryMU
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185908.6897342-UTR-P-wetherbeei_contig11370:1020..10371683185908.6897342-UTR-P-wetherbeei_contig11370:1020..1037Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11370 1021..1037 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185908.7058043-CDS-P-wetherbeei_contig11370:1037..20631683185908.7058043-CDS-P-wetherbeei_contig11370:1037..2063Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11370 1038..2063 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11370.3.1prot_P-wetherbeei_contig11370.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11370 1038..2063 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11370.3.1

>prot_P-wetherbeei_contig11370.3.1 ID=prot_P-wetherbeei_contig11370.3.1|Name=mRNA_P-wetherbeei_contig11370.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=342bp
MLQAIGGAAQAVGRFARRHRRALVIGGLAGAAVAGYWRVRSLLHEAEALQ
RALRLRALEEDRYRRYQARAKTECLTAVVNFLPTLRKRLFETVDVNGPVR
ELKQLRRVSRSPGGNSGCGNGSGSGSATGGDGHESPEEDPREAELWEEVK
VTGLVRLMTALYVFSALNLMLRLQLHILGRHSFEEWLHMFRADVAAGEGP
PATAPPQAAGEAPAATTTAAASEGASSAQEPLAAAAAAVVPTGVSMEARH
TFLSSTYEYLLGDGLRALAADVRRAVKLRTAHWRMDKVGAICYTDFVEVL
REVRLEMERPAEPAGATAAAGDAASTPPLLQYFINPRDFGRS
back to top

mRNA from alignment at P-wetherbeei_contig11370:1021..2063+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11370.3.1 ID=mRNA_P-wetherbeei_contig11370.3.1|Name=mRNA_P-wetherbeei_contig11370.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1043bp|location=Sequence derived from alignment at P-wetherbeei_contig11370:1021..2063+ (Phaeothamnion wetherbeei SAG_119_79)
GCACAGAAAGAAAAATAATGCTGCAAGCCATAGGAGGTGCGGCGCAGGCG GTCGGCCGCTTTGCTCGACGCCATCGAAGAGCGCTCGTGATCGGCGGCCT CGCGGGCGCCGCAGTTGCGGGATACTGGCGAGTGCGCTCGCTGCTGCACG AGGCCGAAGCCCTCCAGAGGGCCTTGCGGCTCCGTGCGCTAGAGGAAGAT CGATACCGTCGATACCAAGCGCGCGCGAAGACCGAATGCCTCACCGCGGT CGTCAACTTCCTGCCCACGTTGAGAAAGCGGCTGTTTGAGACAGTTGACG TTAATGGGCCGGTCCGCGAGCTAAAGCAGCTTCGCCGCGTCTCGCGCAGT CCTGGCGGGAACAGCGGATGCGGCAACGGCAGTGGCAGCGGCAGCGCTAC CGGCGGGGATGGCCACGAGTCGCCAGAAGAGGATCCGCGCGAAGCCGAGC TCTGGGAGGAGGTAAAGGTGACCGGCCTCGTCCGGCTGATGACCGCTCTG TACGTCTTCAGCGCTCTCAACCTTATGTTGCGCCTGCAGCTGCACATCCT GGGCCGGCACAGTTTCGAGGAATGGCTCCACATGTTTCGCGCCGACGTCG CCGCTGGGGAAGGCCCGCCAGCAACGGCGCCACCACAGGCAGCCGGAGAG GCCCCGGCGGCTACAACGACCGCAGCTGCCTCGGAGGGCGCTTCTTCCGC GCAGGAACCATTGGCGGCAGCAGCGGCGGCGGTAGTGCCGACCGGTGTAT CAATGGAAGCCCGCCACACGTTTTTGTCAAGCACGTACGAGTACCTGCTG GGCGACGGGCTCCGGGCGCTGGCCGCCGATGTCCGGCGGGCGGTTAAACT CCGGACGGCGCACTGGCGGATGGACAAGGTGGGCGCCATCTGCTACACCG ATTTCGTCGAGGTGCTCCGCGAGGTCCGCCTGGAGATGGAGCGGCCCGCG GAGCCAGCCGGAGCGACGGCGGCGGCGGGAGACGCTGCATCGACACCGCC GCTGCTACAGTACTTTATCAACCCGCGGGACTTCGGCCGCAGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig11370:1021..2063+

>mRNA_P-wetherbeei_contig11370.3.1 ID=mRNA_P-wetherbeei_contig11370.3.1|Name=mRNA_P-wetherbeei_contig11370.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1026bp|location=Sequence derived from alignment at P-wetherbeei_contig11370:1021..2063+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGCAAGCCATAGGAGGTGCGGCGCAGGCGGTCGGCCGCTTTGCTCG
ACGCCATCGAAGAGCGCTCGTGATCGGCGGCCTCGCGGGCGCCGCAGTTG
CGGGATACTGGCGAGTGCGCTCGCTGCTGCACGAGGCCGAAGCCCTCCAG
AGGGCCTTGCGGCTCCGTGCGCTAGAGGAAGATCGATACCGTCGATACCA
AGCGCGCGCGAAGACCGAATGCCTCACCGCGGTCGTCAACTTCCTGCCCA
CGTTGAGAAAGCGGCTGTTTGAGACAGTTGACGTTAATGGGCCGGTCCGC
GAGCTAAAGCAGCTTCGCCGCGTCTCGCGCAGTCCTGGCGGGAACAGCGG
ATGCGGCAACGGCAGTGGCAGCGGCAGCGCTACCGGCGGGGATGGCCACG
AGTCGCCAGAAGAGGATCCGCGCGAAGCCGAGCTCTGGGAGGAGGTAAAG
GTGACCGGCCTCGTCCGGCTGATGACCGCTCTGTACGTCTTCAGCGCTCT
CAACCTTATGTTGCGCCTGCAGCTGCACATCCTGGGCCGGCACAGTTTCG
AGGAATGGCTCCACATGTTTCGCGCCGACGTCGCCGCTGGGGAAGGCCCG
CCAGCAACGGCGCCACCACAGGCAGCCGGAGAGGCCCCGGCGGCTACAAC
GACCGCAGCTGCCTCGGAGGGCGCTTCTTCCGCGCAGGAACCATTGGCGG
CAGCAGCGGCGGCGGTAGTGCCGACCGGTGTATCAATGGAAGCCCGCCAC
ACGTTTTTGTCAAGCACGTACGAGTACCTGCTGGGCGACGGGCTCCGGGC
GCTGGCCGCCGATGTCCGGCGGGCGGTTAAACTCCGGACGGCGCACTGGC
GGATGGACAAGGTGGGCGCCATCTGCTACACCGATTTCGTCGAGGTGCTC
CGCGAGGTCCGCCTGGAGATGGAGCGGCCCGCGGAGCCAGCCGGAGCGAC
GGCGGCGGCGGGAGACGCTGCATCGACACCGCCGCTGCTACAGTACTTTA
TCAACCCGCGGGACTTCGGCCGCAGC
back to top