mRNA_P-wetherbeei_contig11370.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11370.1.1
Unique NamemRNA_P-wetherbeei_contig11370.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11370.1.1 vs. uniprot
Match: A0A835YKL6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKL6_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 2.030e-6
Identity = 31/55 (56.36%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:  253 QEFNDLNLEDMFEVFEKADKAVKDDKPAAAGXXXXXKTAGDAIADIM-KLFGDKK 414
            QE  DLNLEDMFEVF+KADK++ D +   AG     K AG  IAD++  LFG KK
Sbjct:    5 QEVTDLNLEDMFEVFDKADKSISDKEVGKAGG----KDAGKDIADMLGSLFGGKK 55
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11370.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YKL6_9STRA2.030e-656.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11370contigP-wetherbeei_contig11370:2..1005 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size534
Hectar predicted targeting categorysignal peptide
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-22_003860.1
Cds size291
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185908.6117668-UTR-P-wetherbeei_contig11370:1..1181683185908.6117668-UTR-P-wetherbeei_contig11370:1..118Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11370 2..118 -
1683185908.648362-UTR-P-wetherbeei_contig11370:879..10051683185908.648362-UTR-P-wetherbeei_contig11370:879..1005Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11370 880..1005 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185908.6210282-CDS-P-wetherbeei_contig11370:118..2441683185908.6210282-CDS-P-wetherbeei_contig11370:118..244Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11370 119..244 -
1683185908.6298172-CDS-P-wetherbeei_contig11370:424..4461683185908.6298172-CDS-P-wetherbeei_contig11370:424..446Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11370 425..446 -
1683185908.639065-CDS-P-wetherbeei_contig11370:736..8791683185908.639065-CDS-P-wetherbeei_contig11370:736..879Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11370 737..879 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11370.1.1prot_P-wetherbeei_contig11370.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11370 119..879 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11370.1.1

>prot_P-wetherbeei_contig11370.1.1 ID=prot_P-wetherbeei_contig11370.1.1|Name=mRNA_P-wetherbeei_contig11370.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=97bp
MKASISAAVALLASCCAVQGFVAPLGRSVVGSVRPTQRFAKEQEFNDLNL
EDMFEVFEKADKAVKDDKPAAAGKDEKPKTAGDAIADIMKLFGDKK*
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mRNA from alignment at P-wetherbeei_contig11370:2..1005-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11370.1.1 ID=mRNA_P-wetherbeei_contig11370.1.1|Name=mRNA_P-wetherbeei_contig11370.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1004bp|location=Sequence derived from alignment at P-wetherbeei_contig11370:2..1005- (Phaeothamnion wetherbeei SAG_119_79)
CAACTCCTACATGAGGATTTATAGACTTAGATTTGCCGAAAACTGATCGC
CTCTGACCTCTAGCCGCGTAGCCTCTACTATCCCCCAGACGTCGTAGCTG
TGCCCTCCAGACACGATTTCTCGAAAATGAAGGCTTCGATTTCGGCTGCC
GTAGCCCTCCTAGCATCATGCTGCGCCGTCCAAGGGTTTGTGGCTCCTCT
CGGCCGGTCGGTCGTCGGTTCGGTCCGCCCTACTCAGCGATTTGCCAAGG
AGCAGGAATTCAACGACTTGTGAGTCATGTCTCCTTCTCTTCTTTCCAGC
TTTCCCTGAGGTGTAGTTGAGGCTTTTCTCTCGAGCGGGGATGATGGCGC
GGTAAGAGCCGCCACGCGAGAGCTACGTTTAAGTGGCGTTACGTTTGACA
GGCGAACCGTCACCTGAAGCTTCTACTGGCCTTTTGTGGCGAACTGAACG
GCATAAAGGCAAGCGATACACATGTCATCACAATTTTGTTGTCCTGGCGG
AATCTGACGTCGTCAACCCTCTCCTCCACCTCCCTCTCCTCACGTTCCCT
TCTGAGCAGGAACCTTGAAGACATGTTTGAGGTAAATTAGACCATGGGGT
TACTTGCTCAGTGGCGCTGTTGTTATCCACGACCGCAAATGCATGATATG
CGTCCTTGTTTCGAGGTGATTTGCTTGGCTTCCGCATTTTTCGCGCACTC
ACAGTATTTGCCTCCCGGTTCTCTTTCCATGGTGCCCTGTGTCGAGTGCT
GAATGTTCCAGGTCTTCGAAAAGGCAGATAAGGCGGTCAAGGACGACAAG
CCGGCCGCCGCCGGGAAAGACGAGAAGCCCAAGACGGCGGGTGATGCGAT
CGCTGATATCATGAAGCTCTTCGGAGATAAGAAGTAGTCTAGGCAGGTTA
TGGCAACTCTTTGGGGGACAGAAAGAAAACATCACACGTGTGAGCCGATC
AAGGCTTTCCTTTGGTGCAGGGGCCTCCGCATTGGCCATTCACATGGGAA
CCAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11370:2..1005-

>mRNA_P-wetherbeei_contig11370.1.1 ID=mRNA_P-wetherbeei_contig11370.1.1|Name=mRNA_P-wetherbeei_contig11370.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=291bp|location=Sequence derived from alignment at P-wetherbeei_contig11370:2..1005- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGGCTTCGATTTCGGCTGCCGTAGCCCTCCTAGCATCATGCTGCGC
CGTCCAAGGGTTTGTGGCTCCTCTCGGCCGGTCGGTCGTCGGTTCGGTCC
GCCCTACTCAGCGATTTGCCAAGGAGCAGGAATTCAACGACTTGAACCTT
GAAGACATGTTTGAGGTCTTCGAAAAGGCAGATAAGGCGGTCAAGGACGA
CAAGCCGGCCGCCGCCGGGAAAGACGAGAAGCCCAAGACGGCGGGTGATG
CGATCGCTGATATCATGAAGCTCTTCGGAGATAAGAAGTAG
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