mRNA_P-wetherbeei_contig1137.3.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1137.3.2
Unique NamemRNA_P-wetherbeei_contig1137.3.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1137.3.2 vs. uniprot
Match: D7FX25_ECTSI (Sulfotransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX25_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 2.100e-33
Identity = 80/202 (39.60%), Postives = 123/202 (60.89%), Query Frame = 1
Query:  325 SVAKTPNQVSNIVFIRTHKTVSTTLKDVLYRYGWIHKKIVARFGGEDPGAVINLPKAASKAHKRQVSRSDIIVHHVSRDGAFVDGDFDMMRSYYEEIMQKEVEMRFVTILREARAHYISHYASFTQPYTQTSLEEYLLDDK-VSIRDNLLCAEFGIYDSEGLDRFIAEHLPTFTLILDSDMLDEGLVILARLLKWELVDVLY 927
            S +K   Q+SNI FI+THKT STTL  +LYRYG  H   +A+F  +  G  ++L   ASK   +Q  R DI+ +H + +G F  G +D   + Y +IM  + ++ +VT+LRE  AHY+S+Y  F  P  +  ++EYLL +    +  N L AEFGI D   ++ FI + +P F ++L ++  DEGL +L R+L+W+ +D+ Y
Sbjct:  154 SASKRTEQLSNIAFIKTHKTASTTLASILYRYGMRHDSNIAKF--DQGGTYVDLD-VASKQVAKQGKRVDIMHYHHAWNG-FYSGTWDQATAKYAKIMSNQADVNYVTVLREPVAHYLSYYYYFLNPINKMPIDEYLLKNPHKKLLYNPLAAEFGIEDMAQMNHFIKKQMPKFKMVLLTERFDEGLALLQRMLQWDPIDMTY 351          
BLAST of mRNA_P-wetherbeei_contig1137.3.2 vs. uniprot
Match: A0A6H5L8E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8E6_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 1.000e-32
Identity = 80/214 (37.38%), Postives = 125/214 (58.41%), Query Frame = 1
Query:  304 LHLMEEMSVAKTPNQVSNIVFIRTHKTVSTTLKDVLYRYGWIHKKIVARFGGEDPGAVINLPKAASKAHKRQVSRSDIIVHHVSRDGAFVDGDFDMMRSYYEEIMQKEVEMRFVTILREARAHYISHYASFTQPYTQTSLEEYLLDDKVSIRDNL------LCAEFGIYDSEGLDRFIAEHLPTFTLILDSDMLDEGLVILARLLKWELVDVLY 927
            L+ + E S     NQV+N+VF++THKT STTL  V YRY   HK  +A FG +  G + NL KAA++  K      D++ +H+S  G +  G +    +Y+  IM+    + +VT+LRE R+H +S Y  +  P  + S+E+YL+D   +  +N       L AEFG+  ++ ++ FI  HLP F L++ ++ +DE LV+L  LL W ++DV Y
Sbjct:   39 LNDLVEASARDADNQVANVVFVKTHKTGSTTLAAVFYRYAVRHKLKLAHFG-KGKGTIANLKKAATQTRKSG-ELVDVMHYHISHSGEYT-GTWPQAENYFRRIMRHPDSINYVTVLREPRSHLLSCYYFYIFPECELSIEDYLMDPAHAGDENRHRLRNPLSAEFGVKTAKEMNTFIVNHLPDFKLVMLTERMDESLVLLRSLLGWHMIDVTY 249          
BLAST of mRNA_P-wetherbeei_contig1137.3.2 vs. uniprot
Match: A0A6H5JIK1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIK1_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 6.240e-31
Identity = 81/213 (38.03%), Postives = 128/213 (60.09%), Query Frame = 1
Query:  304 LHLMEEMSVAKTPNQVSNIVFIRTHKTVSTTLKDVLYRYGWIHKKIVARFGGEDPGAVINLPKAASKAHKRQVSRSDIIVHHVSRDGAFVDGDFDMMRSYYEEIMQKEVEMRFVTILREARAHYISHYASFTQPYTQTSLEEYLLD---DKVSIR--DNLLCAEFGIYDSEGLDRFIAEHLPTFTLILDSDMLDEGLVILARLLKWELVDVLY 927
            L+ + E +     NQV+N+ F++THKT STT+  ++YRY   H   ++ FGG    +V +L  AA++  K    R D++ +H+S  G ++ G ++   ++Y  IM+   ++ FVT+LRE R+H +S+Y  F QP  Q S+EE+LL    + +  R   N L AEFG+  +E +D FI+  LP F L+L    LDEGL+ L R+L W ++D+ Y
Sbjct:   34 LNQLVEATTLDHGNQVTNVAFVKTHKTASTTVASIMYRYAARHHLKLSYFGGS---SVTDLRSAANET-KENGQRVDLMHYHISPRGQYM-GTWNEAVTHYRVIMRNPDDINFVTVLREPRSHLLSYYYYFLQPLHQQSIEEFLLSGHRNNIEHRMLSNPLSAEFGVRTAEEMDSFISSALPDFKLVLMR--LDEGLLTLGRMLHWHMIDLTY 239          
BLAST of mRNA_P-wetherbeei_contig1137.3.2 vs. uniprot
Match: D7FI84_ECTSI (Sulfotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI84_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 4.220e-29
Identity = 76/216 (35.19%), Postives = 126/216 (58.33%), Query Frame = 1
Query:  310 LMEEMSVAKTPNQVSNIVFIRTHKTVSTTLKDVLYRYGWIHKKIVARFGGEDPGAVINLPKAASKAHKRQVSRSDIIVHHVSRDGAFVDGDFDMMRSYYEEIMQKEVEMRFVTILREARAHYISHYASFTQPYTQTSLEEYLLDDKVSIR--------DNLLCAEFGIYDSEGLDRFIAEHLPTFTLILDSDMLDEGLVILARLLKWELVDVLYHR 933
            L+EE + A T  Q  N+ F +THKT STT+  +L RY   H   +A FGG    A I L +A  +  +    R D++ +H +  G+F DG +   ++ YE+IM++   + ++T++R  R+H++S+Y  + QP  Q S++ +   ++   +         N LCAEFGI++ E L +FI   LP F L+L ++  DEGL+++ R+L WE++D+ Y R
Sbjct:   23 LVEETAEA-TGQQACNLAFAKTHKTASTTMAMILVRYARRHDMKLASFGGNHVSA-IPLTEAVQQIEESG-ERVDVMHYHYTAYGSF-DGRWAEAKAMYEKIMREGERINYITVVRSQRSHFLSYYYYYVQPEVQLSVQHFFGSNRQDPQFQYQRRRLTNPLCAEFGIHNGEQLAQFIETELPDFRLVLLTEAFDEGLMMMRRILGWEMIDMTYSR 234          
BLAST of mRNA_P-wetherbeei_contig1137.3.2 vs. uniprot
Match: D8LRU8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRU8_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 5.470e-29
Identity = 85/224 (37.95%), Postives = 125/224 (55.80%), Query Frame = 1
Query:  280 GEIVPFASLHLMEEMSVAKTPNQVSNIVFIRTHKTVSTTLKDVLYRYGWIHKKIVARFGGEDPGAVINLPKAASKAHKRQ-VSRSDIIVHHVSRDGAFVDGDFDMMRSYYEEIMQKEVEMRFVTILREARAHYISHYASFTQPYTQTSLEEYLLDDKVSIRD-------NLLCAEFGIYDSEGLDRFIAEHLPTFTLILDSDMLDEGLVILARLLKWELVDVLY 927
            GE    + L+ +   S A+T  Q+SNI FI+THKT STT   +LYRY   H   +A F  +D  + I L +A  +   RQ   R DI+ +HVS  G F +G +      Y  I++    + FVT++RE R+H +S+Y  F QP TQ ++ E+L   K   RD       N L AEFG+   + L   + + LP   ++L ++  DEGL++L RLL+WE+VD+ Y
Sbjct:   76 GEPTNRSYLNNLVANSAAQTEGQLSNIAFIKTHKTASTTFAFLLYRYARRHNVKLAHF--DDHNSAIPLREAVQQTEGRQGKGRCDIMHYHVSAFGQF-EGSWRQAEQAYRRILRNTKAVNFVTVVREPRSHLLSYYYYFLQPQTQKTIGEFLTQAKHP-RDPIHRRLFNPLSAEFGVKKRQDLRYVLEKALPNAKMVLLTEEFDEGLMVLRRLLRWEMVDMTY 295          
BLAST of mRNA_P-wetherbeei_contig1137.3.2 vs. uniprot
Match: A0A6H5JL02_9PHAE (ST protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL02_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 1.510e-28
Identity = 76/220 (34.55%), Postives = 127/220 (57.73%), Query Frame = 1
Query:  298 ASLHLMEEMSVAKTPNQVSNIVFIRTHKTVSTTLKDVLYRYGWIHKKIVARFGGEDPGAVINLPKAASKAHKRQVSRSDIIVHHVSRDGAFVDGDFDMMRSYYEEIMQKEVEMRFVTILREARAHYISHYASFTQPYTQTSLEEYLLDDKVSIR--------DNLLCAEFGIYDSEGLDRFIAEHLPTFTLILDSDMLDEGLVILARLLKWELVDVLYHR 933
            A L+ + E + A T  Q  N+ F +THKT STT+  +L RY   H   +A FGG    A I L +A  +  +    R D++ +H +  G+F DG +   ++ YE+IM++   + ++T++R  R+H++S+Y  + QP  Q S++ +   ++   +         N LCAEFGI++ E L +FI   LP F L+L ++  DEGL+++ R+L WE++D+ Y R
Sbjct:  207 AYLNGLVEETAAATGQQACNLAFAKTHKTASTTMAMILVRYARRHDMKLASFGGNHVSA-IPLTEAVQQIEESG-ERVDVMHYHYTTYGSF-DGRWAEAKAMYEKIMREGERINYITVVRSQRSHFLSYYYYYVQPEVQLSVQHFFGSNREDPQFQYQRRRLTNPLCAEFGIHNGEQLAQFIETELPDFRLVLLTEAFDEGLMMMRRILGWEMIDMTYSR 423          
BLAST of mRNA_P-wetherbeei_contig1137.3.2 vs. uniprot
Match: A0A6H5KIJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIJ9_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 1.290e-25
Identity = 79/234 (33.76%), Postives = 125/234 (53.42%), Query Frame = 1
Query:  298 ASLHLMEEMSVAKTPNQVSNIVFIRTHKTVSTTLKDVLYRYGWIHKKIVARFGGEDPGAVINLPKAASKAHKRQVSRSDIIVHHVSRDGAFVDGDFDMMRSYYEEIMQKEVE----------------------MRFVTILREARAHYISHYASFTQPYTQTSLEEYLLDDKVSIR--DNLLCAEFGIYDSEGLDRFIAEHLPTFTLILDSDMLDEGLVILARLLKWELVDVLY 927
            A L+ +   +V +   Q  N+VF++THKT STT+  VLYRYG  H + VARF  E  G  + L  AA +  K   +R DI  +H   +G F +  +   R  +++IM + V                        +FVT+LR+   H++S++  + +P  +  +EEY    +   R  +N L AEFGIY+   LD F+  HLP+F L + ++ +DEGLV+L R++ W+ +D+ Y
Sbjct:  208 ARLNGLVAAAVERQRGQECNLVFVKTHKTASTTITAVLYRYGLRHGRRVARFKVE--GTAVTLEHAAEET-KESGNRVDIFHYHHVWNGYF-ESTWARARELFKDIMAEPVAPAAXXXXXXXXXXEPRESSGGGTKFVTVLRDPIDHWLSYFYFYYEPEMKIDVEEYFSSGRHKKRPLNNPLAAEFGIYNERDLDEFVLNHLPSFALTMLTEEVDEGLVLLGRVMGWDPIDITY 437          
BLAST of mRNA_P-wetherbeei_contig1137.3.2 vs. uniprot
Match: D8LI80_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI80_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 6.260e-22
Identity = 77/231 (33.33%), Postives = 120/231 (51.95%), Query Frame = 1
Query:  298 ASLHLMEEMSVAKTPNQVSNIVFIRTHKTVSTTLKDVLYRYGWIHKKIVARFGGEDPGAVINLPKAASKAHKRQVSRSDIIVHHVSRDGAFVDGDFDMMRSYYEEIMQKEVE-------------------MRFVTILREARAHYISHYASFTQPYTQTSLEEYLLDDKVSIR--DNLLCAEFGIYDSEGLDRFIAEHLPTFTLILDSDMLDEGLVILARLLKWELVDVLY 927
            A L+ +   +V +   Q  N+ F++THKT STT+  VLYRYG  H + VARF  E  G  + L  AA +  K   +R DI  +H   +G F +  ++  R  +++IM + V                     +FVT+LR+   H++S++  + +P  +  +EEY    +   R  +N L AEFGIY+   LD F+  HL      L  D+ DEGLV+L R++ W+ +D+ Y
Sbjct:  153 ARLNGLVAAAVERQRGQECNVAFVKTHKTASTTITAVLYRYGLRHGRRVARFKVE--GTAVTLEHAAEET-KESGNRVDIFHYHYVWNGYF-ESTWEKARGLFKDIMAEPVAPPVAAAAAAVEPRESSSSGTKFVTVLRDPVDHWLSYFYFYYEPEMKMDVEEYFSSGRHKNRPLNNPLAAEFGIYNERDLDEFVLNHLTE----LRPDV-DEGLVLLGRVMGWDPIDITY 374          
BLAST of mRNA_P-wetherbeei_contig1137.3.2 vs. uniprot
Match: F2UNN1_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UNN1_SALR5)

HSP 1 Score: 85.1 bits (209), Expect = 8.460e-14
Identity = 64/206 (31.07%), Postives = 105/206 (50.97%), Query Frame = 1
Query:  337 TPNQVSN----IVFIRTHKTVSTTLKDVLYRYGWIHKKIVARFGGEDPGAVINLPKAASKAHKRQVSRSDIIVHHVSRDGAFVDG--DFDMMRSYYEEIMQKEVEMRFVTILREARAHYISHYASFTQPYTQT-SLEEYLLDDKVSIRDNLLCAEFGIYDSEGLDRFIAEHLPTFTLILDSDMLDEGLVILARLLKWELVDVLYHR 933
            TP   SN    I +I+THKT S+TL  + +RYG  H   +  +     G  +    +A+         +DI+V+H +     +     ++    +Y E++      +FVTILRE  +HY+S+Y  + +P   +  LEE++   +     N+L  +FG+   E +D+F+ E+ P F  +L SD + E LVILA  L W L D+ Y +
Sbjct:  134 TPRNASNPEQRISYIKTHKTGSSTLGSIFFRYGARHD--LTLYKSPTHGLRVRYKNSATIP-------ADIVVYHYAGIPTALRSIAAWEAAYKWYTEVVPNG---KFVTILREPISHYLSYYYFYDEPKANSLPLEEFV---ERGNHANILMRDFGVRTPEEMDKFMREYAPVFRTLLLSDRMHESLVILANDLGWSLWDMTYTK 324          
BLAST of mRNA_P-wetherbeei_contig1137.3.2 vs. uniprot
Match: D8LRU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRU7_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 2.370e-13
Identity = 69/260 (26.54%), Postives = 113/260 (43.46%), Query Frame = 1
Query:  166 HITPDTIRRRHHEGSGSRALRSSKQLFEGANVELDRNHGEIVPFAS-LHLMEEMSVAKTPNQVSNIVFIRTHKTVSTTLKDVLYRYGWIHKKIVARFGGEDPGAVINLPKAASKAHKRQVSRSDIIVHHVSRDGAFVDGDFDMMRSYYEEIMQKEVEMRFVTILREARAHYISHYASFTQPYTQTSLEEYLLDDKVSIRD-----NLLCAEFGIYDSEGLDRFIAEHLPTFTLILDSDMLDEGLVILARLLKWELVDVLY 927
            H+   + ++R     G  A  +++ L  G   +     G + P  S L+ + E ++  T +QV+N+ F++THKT STTL  ++YRY   H+  ++ FGG   G+ ++L  AA+K                                                                       S+EE+L+    S +D     N L AEFG+  +E LD  I++ LP F LIL ++ L+EGL++LAR+L W ++D+ Y
Sbjct:   62 HVRSLSAQQRSLAAEGDEATETTQGLG-GVAQDHPSLEGRMKPRRSYLNELVEATMLDTDSQVANVAFVKTHKTASTTLAAIMYRYAARHELKLSHFGG---GSAVSLKSAAAKI----------------------------------------------------------------------SIEEFLMHTAGSSKDHKLLYNPLSAEFGVRTAEQLDSLISDTLPDFKLILLTERLEEGLLVLARMLHWHMIDLTY 247          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1137.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX25_ECTSI2.100e-3339.60Sulfotransferase n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
A0A6H5L8E6_9PHAE1.000e-3237.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIK1_9PHAE6.240e-3138.03Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7FI84_ECTSI4.220e-2935.19Sulfotransferase n=1 Tax=Ectocarpus siliculosus Ta... [more]
D8LRU8_ECTSI5.470e-2937.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JL02_9PHAE1.510e-2834.55ST protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]
A0A6H5KIJ9_9PHAE1.290e-2533.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI80_ECTSI6.260e-2233.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
F2UNN1_SALR58.460e-1431.07Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
D8LRU7_ECTSI2.370e-1326.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1137contigP-wetherbeei_contig1137:3137..7073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FX25
Preferred nameGAL3ST3
PFAMsGal-3-0_sulfotr
Model size1951
Max annot lvl2759|Eukaryota
KEGG rclassRC00007,RC00231
KEGG koko:K01019,ko:K09676
KEGG ReactionR04017,R05105,R10805
KEGG Pathwayko00565,ko00600,ko01100,map00565,map00600,map01100
KEGG ModuleM00067
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005975,GO:0005976,GO:0005996,GO:0006022,GO:0006029,GO:0006790,GO:0006807,GO:0008146,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009311,GO:0009987,GO:0016020,GO:0016021,GO:0016740,GO:0016782,GO:0017076,GO:0019538,GO:0030166,GO:0030246,GO:0030309,GO:0030554,GO:0031224,GO:0032553,GO:0032555,GO:0032559,GO:0034645,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044281,GO:0044425,GO:0050656,GO:0050694,GO:0050698,GO:0071704,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901681
Exons7
Evalue1.37e-35
EggNOG OGs2CM97@1|root,2QPNT@2759|Eukaryota
EC2.8.2.11
Descriptiongalactosylceramide sulfotransferase activity
Cds size1248
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1137.3.2prot_P-wetherbeei_contig1137.3.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1137 3197..6193 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185908.5035572-UTR-P-wetherbeei_contig1137:3136..31961683185908.5035572-UTR-P-wetherbeei_contig1137:3136..3196Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1137 3137..3196 +
1683185908.5735598-UTR-P-wetherbeei_contig1137:6193..63571683185908.5735598-UTR-P-wetherbeei_contig1137:6193..6357Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1137 6194..6357 +
1683185908.5829983-UTR-P-wetherbeei_contig1137:6594..70731683185908.5829983-UTR-P-wetherbeei_contig1137:6594..7073Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1137 6595..7073 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185908.5185454-CDS-P-wetherbeei_contig1137:3196..36431683185908.5185454-CDS-P-wetherbeei_contig1137:3196..3643Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1137 3197..3643 +
1683185908.5277889-CDS-P-wetherbeei_contig1137:3972..40771683185908.5277889-CDS-P-wetherbeei_contig1137:3972..4077Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1137 3973..4077 +
1683185908.5369697-CDS-P-wetherbeei_contig1137:4323..43671683185908.5369697-CDS-P-wetherbeei_contig1137:4323..4367Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1137 4324..4367 +
1683185908.545867-CDS-P-wetherbeei_contig1137:4743..48011683185908.545867-CDS-P-wetherbeei_contig1137:4743..4801Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1137 4744..4801 +
1683185908.5552626-CDS-P-wetherbeei_contig1137:5130..52621683185908.5552626-CDS-P-wetherbeei_contig1137:5130..5262Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1137 5131..5262 +
1683185908.5644293-CDS-P-wetherbeei_contig1137:5731..61931683185908.5644293-CDS-P-wetherbeei_contig1137:5731..6193Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1137 5732..6193 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1137.3.2

>prot_P-wetherbeei_contig1137.3.2 ID=prot_P-wetherbeei_contig1137.3.2|Name=mRNA_P-wetherbeei_contig1137.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=416bp
MEGTQPTGCNAVKWPCFRAFCIASGVALCLVVRQHHITPDTIRRRHHEGS
GSRALRSSKQLFEGANVELDRNHGEIVPFASLHLMEEMSVAKTPNQVSNI
VFIRTHKTVSTTLKDVLYRYGWIHKKIVARFGGEDPGAVINLPKAASKAH
KRQVSRSDIIVHHVSRDGAFVDGDFDMMRSYYEEIMQKEVEMRFVTILRE
ARAHYISHYASFTQPYTQTSLEEYLLDDKVSIRDNLLCAEFGIYDSEGLD
RFIAEHLPTFTLILDSDMLDEGLVILARLLKWELVDVLYHRRRVVDVNAD
AATLAAAAAATWTNDSDGDSARAFLAETPFEELAPAVSRKRSVRGRKMSR
SKTGPAGKLEDAVGAAALQSSVICSLSCATAAATATTACLGNSEPLFASL
PTSPRVQQMRIALIS*
back to top

mRNA from alignment at P-wetherbeei_contig1137:3137..7073+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1137.3.2 ID=mRNA_P-wetherbeei_contig1137.3.2|Name=mRNA_P-wetherbeei_contig1137.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3937bp|location=Sequence derived from alignment at P-wetherbeei_contig1137:3137..7073+ (Phaeothamnion wetherbeei SAG_119_79)
AGGCAGCTGCTCTTCCCTCTCCGGAAACCTCTCAGCCAAAAATCCAGGAC ACAACGAAAAATGGAAGGGACGCAGCCGACGGGGTGTAACGCGGTGAAAT GGCCATGCTTTCGCGCCTTCTGCATCGCGTCTGGAGTGGCTCTCTGCCTC GTTGTGAGACAACACCACATCACCCCAGACACGATAAGGAGAAGGCATCA TGAGGGCAGCGGCAGCCGAGCGCTCCGATCGTCGAAACAGCTCTTTGAGG GCGCCAACGTGGAGCTCGACCGCAACCACGGAGAGATCGTTCCGTTTGCG TCGCTGCACTTGATGGAGGAGATGTCCGTTGCCAAGACGCCCAATCAGGT CTCCAATATCGTCTTCATTAGGACGCACAAGACGGTTTCGACGACGCTGA AGGACGTCTTGTATCGATATGGCTGGATTCACAAGAAAATTGTCGCCAGG TTCGGCGGGGAGGATCCCGGCGCCGTCATCAACCTGCCCAAAGCGGCGTC CAAAGCGGTAAGCGAGCGCACAGCGGACCAGCTTTCGCCCTGCTCTCCTG CCAGCAAGCCGCGCTTCGTCTGGATCCAAGATTGTTTGCGGTGTTGCTTA AAGCTTGCTTGAGGGGATAAGATACAGCAGACTTTAAACTGGTCTGGACG GAGGAAGAAAGATAGTGATTTTCTGAATGACGATCCTTGCCTCATCCCTC TCTTCCCATCGCAATCTCGTCCTACTGCGTTTTCCGTACCCCCCGGTCTT TGCACGCCTGGTTACATTGGGCCCTGCATCCCTTTCTCCGATCTCGTCCG TTTGCCGCTTGCTGGACTTTCCCGGCTGGCAAGCAGCACAAGCGGCAGGT GTCTCGATCCGATATCATCGTTCACCATGTGAGCCGCGACGGCGCCTTCG TGGACGGCGACTTTGACATGATGCGGAGCTACTACGAAGAGGTGAGGACG GAGGCGGCAGCAGGGAGTGAAAAGGTTAGGGAAGGTGCATTTCGCGTAAT GGTCCATAACCGTACGCACGGGCGAAAGGAAAGACGAAGCAAGCCGAAAA CGGCTAGAAGGAAGGACTCATTTCTTGCGCAAGCCTCTTGAGCGCGTTTC CCATTTCCGCTCCGGATCTGTTCCTCGCTCTTTGATCTAACTGACACCCG CTGCCTTATACGCATCCTGCGGTTGCAATGTCTGCAGATCATGCAGAAGG AAGTTGAGATGCGGTTCGTGACCATCTTGCGGTACGTGTGTGTTGCTTAG TTTCATGTTCCTGCTTGTTTGGGTTCTTTGCTTTTTTTCTCCCCTTCCCT CATTGAGATCTCGCGCGGTTGGTGGAGGAATCGACTGTTTGCGGGCGCGG CGCGGCGACTCCGATAGGGTGGGTGTGAGCATAAGCACGAGCGGTTGAGC GACGACGGCGCTTCTTGATCGTCCGGCCGTGCTGGCATGTGGCAGCGTGA GAAAGAGCCTCCTGGCAGCAGCGACCCTGACCTCTTCGGCGGTCCTCACC TCTTTTTTTTTCCTCTTTGTAACCGCTGATCCGGTCCGGTCCGGTTCGGC CCACCCACCCGCGTGGTATGACGCCGGTCACGTCCGCCGCCGGCCGGCGA TTCGCAGGGAGGCGCGCGCGCACTACATATCCCACTACGCCTCTTTCACA CAGCCATACACGCAGGTATCGCTTTTCACAGGAAATGAGATTCGCATGAC TTCTATGGGCTCTGACGGGAAATGTGACAAGGTGTAGTTATGGAGCTTTT CTGCATTCTTCGTTCCATGTCGAACCACTTTGCTTCCCAGCGAAGTGGAG GACTTGTCGTGCCCGTGTCTCATATCGCGCTTTTCTGGCCCTCTCTGCTG CATGTCGGTGGCACTGATGTTCCGGTGCCATCGACACTGGTTGCCGACGG CGGCGGTACCAATGACGATGGCGCTGGCGGCCGCGGCGCTGGCGGCGGCG GACGATGGCGGCGGCGGCGGACGGCGGCGGACGACTGCGGACAGACGTCT CTGGAGGAGTATCTTTTGGATGATAAGGTTTCCATCAGGGACAACCTCCT GTGCGCCGAATTCGGGATTTACGATTCCGAGGGCCTCGACCGTTTCATCG CCGAGCACCTTCCGACCTTCACCCTGGTGAGTTAAGCTGACATCTCTGCT GCCCCGCCGTCGCAGCTTCAATGCTTGTGGTTTTTTGGCATGAGTTGAAG TTTCTGCGCAAAAATTGGTGCTGTAACGGGGCCGTCTTGGACTGGTCCTG CGAGTTTGATTCGCTCTCCGTTTCCCGCTGCCCCGCTCGCTTCAATGTAG CCAAATTTTCCTGTCTTTTTCCCACGTCGCCCTCTCTGGCGCCTACTATT TTGCTGCTGCTACTAGCATCCTATATTGCTGCCGCCGCGTGCTTTTGCCA AAAGGGACAACATAGACCGCATCGATTGATGGCACCTATAGCCCGCCCCA ATAAGTATCGCCGCCCGATGCGCGTTCTCTCTACCGTTCCATTTTTCTGT CTTTTCATCGACTCAGTTTGCCCGGTTGTGCGCCCCCCTTTCCGGTCTCT CTTCTTTTTTGCCGTATCTTTCTGCCTCGCTGCATCTGCTGGCAGATCCT CGACTCTGACATGCTCGACGAGGGACTGGTGATCCTCGCGCGCCTTCTCA AGTGGGAGCTCGTGGACGTCTTGTATCACCGGCGCCGCGTCGTCGACGTC AACGCCGATGCCGCCACGCTGGCGGCGGCAGCTGCGGCGACATGGACGAA CGACAGCGATGGCGACAGCGCACGGGCGTTTTTGGCGGAGACCCCGTTTG AGGAGCTCGCGCCTGCCGTAAGCAGGAAGAGAAGTGTGCGGGGTAGAAAG ATGTCTAGGTCGAAGACTGGGCCGGCCGGAAAGTTGGAGGACGCAGTGGG CGCTGCAGCACTGCAAAGTTCGGTTATTTGTTCCTTGAGCTGTGCAACGG CGGCGGCGACGGCAACGACAGCGTGCTTAGGGAATTCCGAGCCTCTTTTT GCTTCGCTTCCAACCTCCCCACGTGTCCAGCAAATGCGCATCGCACTCAT ATCTTGAGTCTCTCCCACCTGTTTTCCTTCCCCTGCTGGCCACTTCCTCT CCGCCCGCAGGCCCAGGCGCGCCTCGACGCGGCGGTGGCGCTCGATGTGC GTCTCAACAAGGCGGCCGCGGCGCACTACGCCGCCATCAAGGCGCAGCAT TCCGGCCTCGAACAGGACATGGTGAGGAAAGGGAACTTCAATGGTCGTTT GTCGCACCGACCTGCAAGTTACGGCACTATCAGCGAGCAGCCAACGTTCT GTGCCTTCTTTTTCCTCAGCAGTTATGGCGTGCCTTTTGGCCGCCGCCGC TTTGGTAGCAGGTTTATCGCCATTCCATACACTCGTCTCCTTGCGCGCCC CTTTCAAACTTTGTTCTATTTCCATCTCCGTCTCGACTTTGCGACGCTGT GCTGCCAGGCCCAGTTTGCGAGCCTCCAAGAAGATTACCAGCAGCGGAGC GTCGCTTTCGCAGACCGGAAGGCGACCAGCGGAGTGAGGCCGCCATGGCC ATGAGCTCGGACGGAGGCAGAGGGGAACCGCTGGGAGGAGAGTAGGAGGG TGGTGGTGGGTGGCATAGTCTAGAGCTTTGTAAAAATATCCTTTCTTGGC CGATTCCTGACAAACCTAGGCTGGCATCGCTTTTTACGGTCGTGTGATGG TGGGAAGTTGGTAACTGTTTCTTGTGTGTTTACGTATCAGTGGGCGGGTG CTCCTTTTCTGCCCTCGAAGCGAGCGCTGTACAGGTAACCAGGGGCTGGA AGGTGTTTTGTGCCATTGGCGGTCGGTCTCGGAAAGACGATCTGCCGCCA CGAGCGGCGGCAAAACGTACTCGTTGCCTCTGGCAGGATGATTTATGGGC CAGTCGGAGCCGCAAAGTAACAATTCTCTTCTCTTTC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1137:3137..7073+

>mRNA_P-wetherbeei_contig1137.3.2 ID=mRNA_P-wetherbeei_contig1137.3.2|Name=mRNA_P-wetherbeei_contig1137.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1248bp|location=Sequence derived from alignment at P-wetherbeei_contig1137:3137..7073+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAGGGACGCAGCCGACGGGGTGTAACGCGGTGAAATGGCCATGCTT
TCGCGCCTTCTGCATCGCGTCTGGAGTGGCTCTCTGCCTCGTTGTGAGAC
AACACCACATCACCCCAGACACGATAAGGAGAAGGCATCATGAGGGCAGC
GGCAGCCGAGCGCTCCGATCGTCGAAACAGCTCTTTGAGGGCGCCAACGT
GGAGCTCGACCGCAACCACGGAGAGATCGTTCCGTTTGCGTCGCTGCACT
TGATGGAGGAGATGTCCGTTGCCAAGACGCCCAATCAGGTCTCCAATATC
GTCTTCATTAGGACGCACAAGACGGTTTCGACGACGCTGAAGGACGTCTT
GTATCGATATGGCTGGATTCACAAGAAAATTGTCGCCAGGTTCGGCGGGG
AGGATCCCGGCGCCGTCATCAACCTGCCCAAAGCGGCGTCCAAAGCGCAC
AAGCGGCAGGTGTCTCGATCCGATATCATCGTTCACCATGTGAGCCGCGA
CGGCGCCTTCGTGGACGGCGACTTTGACATGATGCGGAGCTACTACGAAG
AGATCATGCAGAAGGAAGTTGAGATGCGGTTCGTGACCATCTTGCGGGAG
GCGCGCGCGCACTACATATCCCACTACGCCTCTTTCACACAGCCATACAC
GCAGACGTCTCTGGAGGAGTATCTTTTGGATGATAAGGTTTCCATCAGGG
ACAACCTCCTGTGCGCCGAATTCGGGATTTACGATTCCGAGGGCCTCGAC
CGTTTCATCGCCGAGCACCTTCCGACCTTCACCCTGATCCTCGACTCTGA
CATGCTCGACGAGGGACTGGTGATCCTCGCGCGCCTTCTCAAGTGGGAGC
TCGTGGACGTCTTGTATCACCGGCGCCGCGTCGTCGACGTCAACGCCGAT
GCCGCCACGCTGGCGGCGGCAGCTGCGGCGACATGGACGAACGACAGCGA
TGGCGACAGCGCACGGGCGTTTTTGGCGGAGACCCCGTTTGAGGAGCTCG
CGCCTGCCGTAAGCAGGAAGAGAAGTGTGCGGGGTAGAAAGATGTCTAGG
TCGAAGACTGGGCCGGCCGGAAAGTTGGAGGACGCAGTGGGCGCTGCAGC
ACTGCAAAGTTCGGTTATTTGTTCCTTGAGCTGTGCAACGGCGGCGGCGA
CGGCAACGACAGCGTGCTTAGGGAATTCCGAGCCTCTTTTTGCTTCGCTT
CCAACCTCCCCACGTGTCCAGCAAATGCGCATCGCACTCATATCTTGA
back to top