mRNA_P-wetherbeei_contig1137.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1137.1.2
Unique NamemRNA_P-wetherbeei_contig1137.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1137.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1137contigP-wetherbeei_contig1137:4..2326 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1168
Hectar predicted targeting categoryother localisation
Exons4
Cds size1167
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185908.4421208-CDS-P-wetherbeei_contig1137:3..2401683185908.4421208-CDS-P-wetherbeei_contig1137:3..240Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1137 4..240 -
1683185908.4518986-CDS-P-wetherbeei_contig1137:560..11121683185908.4518986-CDS-P-wetherbeei_contig1137:560..1112Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1137 561..1112 -
1683185908.4612384-CDS-P-wetherbeei_contig1137:1602..18591683185908.4612384-CDS-P-wetherbeei_contig1137:1602..1859Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1137 1603..1859 -
1683185908.4697785-CDS-P-wetherbeei_contig1137:2205..23261683185908.4697785-CDS-P-wetherbeei_contig1137:2205..2326Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1137 2206..2326 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1137.1.2prot_P-wetherbeei_contig1137.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1137 4..2326 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1137.1.2

>prot_P-wetherbeei_contig1137.1.2 ID=prot_P-wetherbeei_contig1137.1.2|Name=mRNA_P-wetherbeei_contig1137.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=389bp
MDVWCSRGGMDVPWAVMAMLGDRFAFYGTPVFHAYKALAMGALHRMSDIL
FPSTEAESAAWFLIERNKRHGYDDLYVILTQIAFNKTAMAHFPRAASEAE
AVLLAKALTDDMFAVDAETLDRDFIGMEVEVSDAIAYATMVYDTAAEHYG
RDVHGVKVLEVAPSARHRGLDGGFHRLHGVVKAHTAAALAAAGAATAEAA
AAAAAKAEQVAAMPTAGDKWKSITKHDAEVAAAAAEEAAAALAAWTPSLA
QELTPAGLPELIRAYATPDQPFLPVCGDCENADFGEVLTPGYLFPHDIDG
LQSDGFAFYKVVAPAHEYRGRTLRPAAHVVVLEAGGRCVVREERPSSEPP
LAPGAYRPRPFYFCDGDPCGADREYCGPHALHPDASRTV
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mRNA from alignment at P-wetherbeei_contig1137:4..2326-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1137.1.2 ID=mRNA_P-wetherbeei_contig1137.1.2|Name=mRNA_P-wetherbeei_contig1137.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2323bp|location=Sequence derived from alignment at P-wetherbeei_contig1137:4..2326- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGTGTGGTGCTCCCGCGGCGGCATGGATGTGCCGTGGGCTGTCAT
GGCGATGCTCGGCGACCGCTTCGCCTTCTACGGCACCCCCGTTTTCCACG
CGTATAAGGCCCTCGCCATGGGTGAGTTTTATTTTTTCCCCTCTGCCTCT
TCTTCTGCGGAGGGTTCGTGTTGAGAAAGTGGGATCCCTTGTTTTCTCCA
TTTTTCGTAGATGTATCCCTCCTTTCCGACAGTTCTTCTCGATTGCGTTT
AGTGTTCATTCCATTATTCTTTCTTTGGTTTCTTTCCCTTTGCTGCCGGG
TTGCGTCCTTCCTTCTCGTTGGCGCCTAAACCCTACCTGATCCTTTGTAC
TCTACCTCCTTCGGCTCGCTGCAACTGCAACGCAACCGCACCCTCCATAT
TATTTCCCTTTCAATGTCGTCTCGAAACGGCCCCGTCACAATGCACAAAC
CGTGGCCGGCACGGCAGGGGCCCTCCACCGCATGTCTGATATCCTGTTCC
CGTCGACGGAGGCCGAGTCGGCCGCCTGGTTCCTGATCGAACGCAACAAG
CGCCACGGGTACGACGATTTGTACGTGATTCTGACGCAGATTGCCTTCAA
TAAAACGGCCATGGCGCACTTCCCGCGTGCGGCATCAGAGGCAGAGGCGG
TGCTGCTGGCCAAGGCGCTGACGGACGACATGTTCGCCGTCGACGCCGAA
ACTCTGGACCGGGACTTCATCGGGGTGAGGGGAAAGAGACGGGCCGTTGC
GTTGTCTCGGCAACCTTTTTTCTGGTTTGTCGATATGTCGGTTGCACAGA
GTTGTCTTCTCTTTTGAAGCTTTCATCGGGGGTCCTGTGGCTTGTGCAGG
CAACCTAACGCTTTTCTTTTCCTCGGTGGAAAATGGTCCGGAAGAGGATG
AGAGTTTTATCAAAGAAGTTATCCTTTTTCAGCCCCTGATTCACTGCTAC
CAATGCAGAAAGAATGCTCTGGAAGGAGAGGTGAAGGATTGCTCGCCCCG
CTTCTTCCTTTTACCGCGTCCGCGCTCCAGAGGAACGAGGGCCGACCGGA
TAGCTGCCTCGGGTACTCGACACCACGACATAATGCATCGGTCCCATATC
ATTTCCCTAATCCCTGTAGCATTGCCTCGTCCAACAGCATTATAACCGTC
ACCAAATGTGCTAACCATAGTAATCGTAAACGCGAAACGCATATTCGCGA
CCGTAAACCTCCAGATGGAGGTCGAGGTGTCGGATGCCATCGCCTACGCC
ACCATGGTCTATGACACGGCGGCGGAGCACTACGGCCGCGACGTTCACGG
CGTAAAGGTGCTCGAAGTGGCGCCGTCGGCCCGCCATCGCGGCCTCGACG
GCGGCTTCCACCGCCTCCATGGCGTCGTCAAGGCGCATACGGCAGCGGCG
CTGGCGGCGGCAGGGGCCGCGACCGCGGAGGCGGCGGCTGCGGCAGCGGC
GAAGGCGGAGCAGGTGGCGGCGATGCCGACAGCGGGCGACAAGTGGAAGA
GCATCACGAAGCATGACGCGGAGGTGGCGGCGGCGGCAGCGGAGGAGGCG
GCGGCAGCGCTGGCGGCGTGGACGCCGAGCCTGGCGCAGGAGCTGACGCC
GGCGGGACTGCCGGAGCTGATCCGGGCGTACGCGACGCCCGACCAGCCGT
TCCTGCCGGTGTGCGGCGACTGTGAGAATGCCGATTTTGGCGAGGTGCTG
ACACCTGGCTACCTGTTCCCGCACGACATCGACGGCCTCCAGTCCGACGG
CTTTGCGTTTTACAAGGTATGGGTCCCGTCAGCGACCGTCTTTCATGCCT
GTCTGTTCCCCCTTCGTCGTGAGTTTGCTCTCGGTCGCGTCGTTACTAGT
GTTGCTGTGTGGCAAACCTTGTAGGGTGCTGCCGTGCCTCCGTTTTCGCC
CGCTGCGGCTTCCAGCTTCTTGCGACTTGTTTGTTCTCACGTGGGCCGAT
GCCCATGAAACCGCCACCCAGCCACCGCATCCAGCCGGAATTCCTTCGTC
GCAGTCGTAAACACACCACCCTACCTCATACTCTAATTCTCCGCCTTGCT
TTGCGCAATCCCCCCCACCCATTTGAACACCCCTAGGTCGTGGCGCCGGC
GCACGAATACCGTGGCAGGACCCTGCGCCCCGCTGCCCACGTGGTGGTTC
TCGAAGCCGGCGGTCGCTGCGTCGTGCGAGAAGAGAGACCCTCCTCCGAG
CCGCCGCTGGCGCCCGGCGCTTACCGGCCCCGCCCCTTCTACTTTTGCGA
CGGCGACCCGTGCGGCGCCGACCGCGAGTACTGCGGCCCGCATGCGCTGC
ACCCGGACGCGAGCCGGACGGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1137:4..2326-

>mRNA_P-wetherbeei_contig1137.1.2 ID=mRNA_P-wetherbeei_contig1137.1.2|Name=mRNA_P-wetherbeei_contig1137.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1167bp|location=Sequence derived from alignment at P-wetherbeei_contig1137:4..2326- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGTGTGGTGCTCCCGCGGCGGCATGGATGTGCCGTGGGCTGTCAT
GGCGATGCTCGGCGACCGCTTCGCCTTCTACGGCACCCCCGTTTTCCACG
CGTATAAGGCCCTCGCCATGGGGGCCCTCCACCGCATGTCTGATATCCTG
TTCCCGTCGACGGAGGCCGAGTCGGCCGCCTGGTTCCTGATCGAACGCAA
CAAGCGCCACGGGTACGACGATTTGTACGTGATTCTGACGCAGATTGCCT
TCAATAAAACGGCCATGGCGCACTTCCCGCGTGCGGCATCAGAGGCAGAG
GCGGTGCTGCTGGCCAAGGCGCTGACGGACGACATGTTCGCCGTCGACGC
CGAAACTCTGGACCGGGACTTCATCGGGATGGAGGTCGAGGTGTCGGATG
CCATCGCCTACGCCACCATGGTCTATGACACGGCGGCGGAGCACTACGGC
CGCGACGTTCACGGCGTAAAGGTGCTCGAAGTGGCGCCGTCGGCCCGCCA
TCGCGGCCTCGACGGCGGCTTCCACCGCCTCCATGGCGTCGTCAAGGCGC
ATACGGCAGCGGCGCTGGCGGCGGCAGGGGCCGCGACCGCGGAGGCGGCG
GCTGCGGCAGCGGCGAAGGCGGAGCAGGTGGCGGCGATGCCGACAGCGGG
CGACAAGTGGAAGAGCATCACGAAGCATGACGCGGAGGTGGCGGCGGCGG
CAGCGGAGGAGGCGGCGGCAGCGCTGGCGGCGTGGACGCCGAGCCTGGCG
CAGGAGCTGACGCCGGCGGGACTGCCGGAGCTGATCCGGGCGTACGCGAC
GCCCGACCAGCCGTTCCTGCCGGTGTGCGGCGACTGTGAGAATGCCGATT
TTGGCGAGGTGCTGACACCTGGCTACCTGTTCCCGCACGACATCGACGGC
CTCCAGTCCGACGGCTTTGCGTTTTACAAGGTCGTGGCGCCGGCGCACGA
ATACCGTGGCAGGACCCTGCGCCCCGCTGCCCACGTGGTGGTTCTCGAAG
CCGGCGGTCGCTGCGTCGTGCGAGAAGAGAGACCCTCCTCCGAGCCGCCG
CTGGCGCCCGGCGCTTACCGGCCCCGCCCCTTCTACTTTTGCGACGGCGA
CCCGTGCGGCGCCGACCGCGAGTACTGCGGCCCGCATGCGCTGCACCCGG
ACGCGAGCCGGACGGTC
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