mRNA_P-wetherbeei_contig11368.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11368.1.1
Unique NamemRNA_P-wetherbeei_contig11368.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11368.1.1 vs. uniprot
Match: A0A1V9YWU9_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YWU9_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.450e-25
Identity = 55/110 (50.00%), Postives = 72/110 (65.45%), Query Frame = 2
Query:  206 LMSLREVGFWRDSR-DPVDPRPDPTTLVDDAWARADGGAALRRTVSFLRS-GFVESYELGCSFCRFPGCGAAPADMGCATLTDGESWVWPEGFAHYVAVHHVRPPADFLD 529
            + +L EVGFWR +  D +D RP P  L D +W  A+  A   R +S+LR+ G VESYE+G SFCR  G   AP +MG  T+TDG  + WPEG+AHY+  HHVRPP + +D
Sbjct:    1 MATLLEVGFWRQTEGDRLDQRPHPRALQDPSWF-AEHPALATRVISYLRTRGCVESYEMGYSFCRL-GLDCAPKEMGACTMTDGV-YCWPEGYAHYLQAHHVRPPQELVD 107          
BLAST of mRNA_P-wetherbeei_contig11368.1.1 vs. uniprot
Match: A0A5D6YFX2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YFX2_9STRA)

HSP 1 Score: 102 bits (254), Expect = 2.320e-23
Identity = 65/137 (47.45%), Postives = 77/137 (56.20%), Query Frame = 2
Query:  215 LREVGFW-RDSRDPVDP-RPDPTTLVDDAWARA--DGGAALRRTVSFLRSG-FVESYELGCSFCRFPGCGAA---PADMGCATLTDGESWVWPEGFAHYVAVHHVRPPADFLD--DAARRGWRRLWRQQRDAVGGGE 595
            LRE+GFW +   D   P RPDPT LVD AWA A       L+    +L +G FVES+EL  S+CRF  C  A   P  MG  TLTDG  + WPEG+ HYV  H VRPPA+FL   D  R   +R     +   GGGE
Sbjct:    2 LREIGFWCQAGGDDASPERPDPTALVDVAWAEALLADPERLQTLQRYLTTGAFVESHELAYSYCRFTDCSVAQSEPKVMGACTLTDGV-FCWPEGYWHYVRCHSVRPPAEFLQHVDTGRERMQRAAEAAQREGGGGE 137          
BLAST of mRNA_P-wetherbeei_contig11368.1.1 vs. uniprot
Match: A0A067CDZ9_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CDZ9_SAPPC)

HSP 1 Score: 100 bits (248), Expect = 1.010e-22
Identity = 54/107 (50.47%), Postives = 68/107 (63.55%), Query Frame = 2
Query:  215 LREVGFW-RDSRDPVDPRPDPTTLVDDAWARADGGAALRRTVSFLRS-GFVESYELGCSFCRFPGCGAAPADMGCATLTDGESWVWPEGFAHYVAVHHVRPPADFLD 529
            L +VGFW +D  DP+D RP P TL D AW   + G A    V +LR+ G VESYE+G SFCR  G    P  MG  T+TDG  + WPEG+AHY+ +H VRPP + +D
Sbjct:    2 LVDVGFWCKDEADPLDGRPHPRTLQDAAWFSENVGLAAI-VVDYLRTQGCVESYEMGYSFCRL-GDACPPKSMGACTMTDGV-YCWPEGYAHYLDIHCVRPPQELVD 105          
BLAST of mRNA_P-wetherbeei_contig11368.1.1 vs. uniprot
Match: D8LAV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAV9_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 1.400e-22
Identity = 67/166 (40.36%), Postives = 80/166 (48.19%), Query Frame = 2
Query:  215 LREVGFWRDSRDPVDPRPDPTTLVDDAWARADGGAALRRTVS-FLRSGFVESYELGCSFCRFPGCG------------------------------AAPAD---------MGCATLTDGESWVWPEGFAHYVAVHHVRPPADFLDDAARRGWRRLWRQQRDAVGGG 592
            L +VGFW D RD  D RPDP  LVD+ W    GG      V+ ++RSGF+ES+ELG SFCRF  CG                               AP           MGC TLTDG+ +VWPEG AHY+  H VRPP DF+  + R       R  R+A  GG
Sbjct:   60 LVDVGFWADPRDSGDKRPDPAQLVDEEW----GGTVEAVAVALYVRSGFLESFELGYSFCRFGCCGDGSAAQTSARDSKRRSWFSAIGGNGGRCGGGAPEQRRGPKGSKFMGCTTLTDGK-YVWPEGLAHYIEEHAVRPPDDFVTFSLRN-----LRALREAQAGG 215          
BLAST of mRNA_P-wetherbeei_contig11368.1.1 vs. uniprot
Match: A0A485KNH7_9STRA (Aste57867_9691 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KNH7_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.700e-22
Identity = 55/107 (51.40%), Postives = 68/107 (63.55%), Query Frame = 2
Query:  215 LREVGFWRDS-RDPVDPRPDPTTLVDDAWARADGGAALRRTVSFLR-SGFVESYELGCSFCRF-PGCGAAPADMGCATLTDGESWVWPEGFAHYVAVHHVRPPADFL 526
            + EVGFWR S  DP D RP P  L D  W   + G A R+ ++++R +G VESYE+G SFCR  P C +    MG  TLTDG  + WPEG+AHY+  HHVRPP  FL
Sbjct:    1 MEEVGFWRKSDADPADLRPHPQALQDKTWYMENKGTA-RQLIAYVRYAGCVESYEMGYSFCRIDPSCPSKV--MGACTLTDGV-YCWPEGYAHYLEQHHVRPPEVFL 103          
BLAST of mRNA_P-wetherbeei_contig11368.1.1 vs. uniprot
Match: T0Q7W4_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0Q7W4_SAPDV)

HSP 1 Score: 98.6 bits (244), Expect = 4.020e-22
Identity = 54/108 (50.00%), Postives = 67/108 (62.04%), Query Frame = 2
Query:  212 SLREVGFW-RDSRDPVDPRPDPTTLVDDAWARADGGAALRRTVSFLRS-GFVESYELGCSFCRFPGCGAAPADMGCATLTDGESWVWPEGFAHYVAVHHVRPPADFLD 529
            +L EVGFW +D  D +D RP P TL +  W  A+   A    V +LR+ G VESYE+G SFCR  G    P  MG  T+TDG  + WPEG+AHY+ VH VRPP D +D
Sbjct:    3 ALLEVGFWCKDEADLLDGRPHPRTLQEPVWFAANADLAAS-VVDYLRTQGCVESYEMGYSFCRL-GDACPPKSMGACTMTDGV-YCWPEGYAHYLDVHCVRPPQDLVD 107          
BLAST of mRNA_P-wetherbeei_contig11368.1.1 vs. uniprot
Match: W4GN93_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GN93_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.960e-20
Identity = 51/109 (46.79%), Postives = 69/109 (63.30%), Query Frame = 2
Query:  215 LREVGFWRDSRDPV-DPRPDPTTLVDDAW--ARADGGAALRRTVSFLR-SGFVESYELGCSFCRFPGCGAAPADMGCATLTDGESWVWPEGFAHYVAVHHVRPPADFLD 529
            + E+GFWR   D   D RP P +L D AW   RAD  A   + + ++R +GFVESYE+G SFCR     ++ A +G  T+TDG  + WPEG+ HY+  HHV PPADF++
Sbjct:    1 MHEIGFWRKYNDDAGDVRPHPQSLQDKAWYDRRADMAA---KVIWYVRHAGFVESYEMGYSFCRIDSSCSSKA-LGACTMTDG-MYCWPEGYVHYLEQHHVVPPADFVE 104          
BLAST of mRNA_P-wetherbeei_contig11368.1.1 vs. uniprot
Match: UPI001F15F6D7 (hypothetical protein n=1 Tax=Sandaracinus amylolyticus TaxID=927083 RepID=UPI001F15F6D7)

HSP 1 Score: 87.0 bits (214), Expect = 3.600e-17
Identity = 51/134 (38.06%), Postives = 68/134 (50.75%), Query Frame = 2
Query:  209 MSLREVGFWRDSRDPVDPRPDPTTLVDDAWARADGGAALRRTVSFLRSGFVESYELGCSFCRFPGCGAAPADMGCATLTDGESWVWPEGFAHYVAVHHVRPPADFLDDAARRGWRRL------------WRQQR 574
            M LR +G+WR   +     PDP   +D  W  ++      R + +LR G   S+  G S CR   CG++    G  TLTDG ++VWPEGFAHYVA H V+PP + L+      WR L            WR+QR
Sbjct:    6 MQLRLIGYWRSVNEHDSSLPDPRDFIDPEWDESERA----RVIDYLRQGRTTSWSPGFSRCRL--CGSS---NGSKTLTDG-TFVWPEGFAHYVAEHAVKPPQEILEHV----WRELDRIARIEPDVAWWREQR 125          
BLAST of mRNA_P-wetherbeei_contig11368.1.1 vs. uniprot
Match: UPI001CCDB548 (hypothetical protein n=1 Tax=Nannocystis pusilla TaxID=889268 RepID=UPI001CCDB548)

HSP 1 Score: 83.2 bits (204), Expect = 1.670e-16
Identity = 50/109 (45.87%), Postives = 58/109 (53.21%), Query Frame = 2
Query:  215 LREVGFWRDSRDPVDPRPDPTTLVDDAWARADGGAALRRTVSFLRSGFVESYELGCSFCRFPGCGAAPADMGCATLTDGESWVWPEGFAHYVAVHHVRPPADFLDDAAR 541
            +R VG+WRD      P P      D      D G  LRR   +LR G V +   G SFCRF  CG A A MG   LTDG  WVWPEG AHYV VH +  P +F++ A R
Sbjct:    1 MRAVGYWRDEWHGDYPEPQALVATDQ-----DPGQ-LRRIADWLRRGEVFAAWRGLSFCRFD-CGIADAHMGSRCLTDGV-WVWPEGLAHYVEVHQLLLPDEFVERALR 101          
BLAST of mRNA_P-wetherbeei_contig11368.1.1 vs. uniprot
Match: A0A150U157_SORCE (Uncharacterized protein n=1 Tax=Sorangium cellulosum TaxID=56 RepID=A0A150U157_SORCE)

HSP 1 Score: 74.7 bits (182), Expect = 1.540e-12
Identity = 43/110 (39.09%), Postives = 63/110 (57.27%), Query Frame = 2
Query:  206 LMSLREVGFWRDSRDPVDPRPDPTTLVDDAWARADGGAALRRTVSFLRSGFVESYELGCSFCRFPGCGAAPADMGCATLTDGESWVWPEGFAHYVAVHHVRPPADFLDDA 535
            ++ LR +G+WR +  P+   PDP   VD++WA ++      R +++LR+G       G S+CRF  CG      G A L+DG  ++WPEG AHYV  H VRPP + +  A
Sbjct:    1 MIELRLIGYWRSTAAPL--WPDPAWFVDESWASSE----RTRVLAYLRAGVPLWATGGHSWCRFR-CGTHAC--GSAELSDGR-FLWPEGLAHYVERHGVRPPDELVQHA 100          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11368.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A1V9YWU9_9STRA2.450e-2550.00Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A5D6YFX2_9STRA2.320e-2347.45Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A067CDZ9_SAPPC1.010e-2250.47Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
D8LAV9_ECTSI1.400e-2240.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A485KNH7_9STRA1.700e-2251.40Aste57867_9691 protein n=1 Tax=Aphanomyces stellat... [more]
T0Q7W4_SAPDV4.020e-2250.00Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
W4GN93_9STRA1.960e-2046.79Uncharacterized protein n=5 Tax=Aphanomyces astaci... [more]
UPI001F15F6D73.600e-1738.06hypothetical protein n=1 Tax=Sandaracinus amylolyt... [more]
UPI001CCDB5481.670e-1645.87hypothetical protein n=1 Tax=Nannocystis pusilla T... [more]
A0A150U157_SORCE1.540e-1239.09Uncharacterized protein n=1 Tax=Sorangium cellulos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11368contigP-wetherbeei_contig11368:2..740 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog4792.ETI36921
Model size739
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.31e-25
EggNOG OGs2CH9W@1|root,2S3NU@2759|Eukaryota,3QH54@4776|Peronosporales
Cds size531
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185908.4064548-CDS-P-wetherbeei_contig11368:1..5321683185908.4064548-CDS-P-wetherbeei_contig11368:1..532Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11368 2..532 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185908.4157925-UTR-P-wetherbeei_contig11368:532..7401683185908.4157925-UTR-P-wetherbeei_contig11368:532..740Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11368 533..740 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11368.1.1prot_P-wetherbeei_contig11368.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11368 2..532 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11368.1.1

>prot_P-wetherbeei_contig11368.1.1 ID=prot_P-wetherbeei_contig11368.1.1|Name=mRNA_P-wetherbeei_contig11368.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=177bp
MSLREVGFWRDSRDPVDPRPDPTTLVDDAWARADGGAALRRTVSFLRSGF
VESYELGCSFCRFPGCGAAPADMGCATLTDGESWVWPEGFAHYVAVHHVR
PPADFLDDAARRGWRRLWRQQRDAVGGGEEGDGGGSGDGGGSGNGGSSGG
GSGGSSGGGNGGGDGGVAGRRLLWEAG
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mRNA from alignment at P-wetherbeei_contig11368:2..740-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11368.1.1 ID=mRNA_P-wetherbeei_contig11368.1.1|Name=mRNA_P-wetherbeei_contig11368.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=739bp|location=Sequence derived from alignment at P-wetherbeei_contig11368:2..740- (Phaeothamnion wetherbeei SAG_119_79)
GATTGGCTATTGCATGTGGCGGGGCGACGAGAGCTACAGAAAGTGATCCG TCTTTTTGCCAGATTTTTGTCCAGGGAAACCTCTTTTTCTGAACACTGCT GGCGCCGTACAAGTGCTTTGATCCTGAGCAAAATCGAACAGCTTCCGCCT GCTTGCAGCGCAGCCTTCGCATCGCGGAGCCGTAATTTGGCTGCAAGACC AAAATCTTATGTCACTTCGAGAGGTTGGCTTCTGGCGGGACTCGCGGGAC CCCGTCGACCCGCGCCCGGACCCCACGACGCTTGTCGACGATGCATGGGC CCGCGCCGATGGCGGCGCTGCCCTGCGGCGCACCGTCTCCTTCCTTCGGA GCGGCTTTGTCGAGTCCTACGAGCTCGGGTGCTCCTTCTGTCGCTTCCCC GGCTGCGGCGCCGCCCCGGCTGATATGGGCTGCGCCACGCTGACGGACGG TGAGTCCTGGGTGTGGCCAGAAGGATTTGCGCACTACGTGGCGGTGCACC ATGTGCGCCCGCCGGCGGACTTCCTCGACGACGCCGCGCGCCGCGGCTGG CGACGGCTGTGGCGGCAGCAGCGTGACGCTGTTGGCGGCGGCGAAGAAGG CGACGGCGGTGGCAGCGGGGATGGCGGCGGCAGTGGGAATGGTGGCAGCA GCGGCGGCGGCAGCGGCGGAAGCAGTGGCGGCGGCAACGGCGGCGGCGAC GGCGGGGTAGCCGGGCGGCGACTGCTGTGGGAAGCAGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11368:2..740-

>mRNA_P-wetherbeei_contig11368.1.1 ID=mRNA_P-wetherbeei_contig11368.1.1|Name=mRNA_P-wetherbeei_contig11368.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=531bp|location=Sequence derived from alignment at P-wetherbeei_contig11368:2..740- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCACTTCGAGAGGTTGGCTTCTGGCGGGACTCGCGGGACCCCGTCGA
CCCGCGCCCGGACCCCACGACGCTTGTCGACGATGCATGGGCCCGCGCCG
ATGGCGGCGCTGCCCTGCGGCGCACCGTCTCCTTCCTTCGGAGCGGCTTT
GTCGAGTCCTACGAGCTCGGGTGCTCCTTCTGTCGCTTCCCCGGCTGCGG
CGCCGCCCCGGCTGATATGGGCTGCGCCACGCTGACGGACGGTGAGTCCT
GGGTGTGGCCAGAAGGATTTGCGCACTACGTGGCGGTGCACCATGTGCGC
CCGCCGGCGGACTTCCTCGACGACGCCGCGCGCCGCGGCTGGCGACGGCT
GTGGCGGCAGCAGCGTGACGCTGTTGGCGGCGGCGAAGAAGGCGACGGCG
GTGGCAGCGGGGATGGCGGCGGCAGTGGGAATGGTGGCAGCAGCGGCGGC
GGCAGCGGCGGAAGCAGTGGCGGCGGCAACGGCGGCGGCGACGGCGGGGT
AGCCGGGCGGCGACTGCTGTGGGAAGCAGGC
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