mRNA_P-wetherbeei_contig11367.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11367.1.1
Unique NamemRNA_P-wetherbeei_contig11367.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11367.1.1 vs. uniprot
Match: D7FKJ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKJ3_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 4.340e-50
Identity = 83/121 (68.60%), Postives = 101/121 (83.47%), Query Frame = 1 
Query:    1 AVAFGGTDALRARFGDKLRRASKLLDELQQDIFNEDWDLLATYPPAFRSLVPIFTKYTDAAFPSDDPVDKNTRVSLRYEVGRLFGAVERLKRATDAKDAVEAEAAYAAMSVAYDRYLKVCN 363
            A A    + +R RFGDKLRRA+K+LDELQ DI N DWDL+ TYP AFR+LVP+FTKYTDAAFP+DDPVD  +RV+LRYEVGR +GAVERLKRA + +++ EA++A+AAMSVAYDRYLK  N
Sbjct:  117 AQAGSAVEVMRLRFGDKLRRAAKMLDELQDDISNSDWDLVTTYPNAFRTLVPVFTKYTDAAFPTDDPVDTTSRVALRYEVGRFYGAVERLKRAAEQQNSREAQSAFAAMSVAYDRYLKAGN 237
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BLAST of mRNA_P-wetherbeei_contig11367.1.1 vs. uniprot
Match: A0A0G4GSY0_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GSY0_VITBC)

HSP 1 Score: 149 bits (375), Expect = 1.930e-41
Identity = 71/110 (64.55%), Postives = 89/110 (80.91%), Query Frame = 1 
Query:   25 ALRARFGDKLRRASKLLDELQQDIFNEDWDLLATYPPAFRSLVPIFTKYTDAAFPSDDPVDKNTRVSLRYEVGRLFGAVERLKRATDAKDAVEAEAAYAAMSVAYDRYLK 354
            AL  +   ++R+ + +LDELQ DI++EDWD+LA+YP   R+ VPIFTKYTD+AFP  DPVD+NTR +LRYEVGRLFG+VERLKRA D KD  E E A+AAMSV++DRYLK
Sbjct:  103 ALAQKIAPRIRQIATVLDELQADIYDEDWDILASYPQQLRAYVPIFTKYTDSAFPGKDPVDENTRFALRYEVGRLFGSVERLKRAVDKKDVRETEEAFAAMSVSFDRYLK 212
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BLAST of mRNA_P-wetherbeei_contig11367.1.1 vs. uniprot
Match: A0A7R9UEJ4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UEJ4_9STRA)

HSP 1 Score: 144 bits (364), Expect = 2.970e-41
Identity = 67/109 (61.47%), Postives = 87/109 (79.82%), Query Frame = 1 
Query:   37 RFGDKLRRASKLLDELQQDIFNEDWDLLATYPPAFRSLVPIFTKYTDAAFPSDDPVDKNTRVSLRYEVGRLFGAVERLKRATDAKDAVEAEAAYAAMSVAYDRYLKVCN 363
            R G+K+RR +++LD+LQ+DIF EDW  ++TYP   RS VPIFTKYTD AFPS+  +D  TR +LRYEVGR FGAVERLKRA D++D  EAEA++A +S+++DRYLK  N
Sbjct:   39 RAGEKIRRIARILDDLQRDIFEEDWTFISTYPVELRSFVPIFTKYTDTAFPSESAIDTQTRFALRYEVGRFFGAVERLKRAVDSRDIGEAEASFAQISISFDRYLKAGN 147
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BLAST of mRNA_P-wetherbeei_contig11367.1.1 vs. uniprot
Match: A0A7S3Y3I2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3I2_HETAK)

HSP 1 Score: 147 bits (371), Expect = 3.100e-41
Identity = 69/105 (65.71%), Postives = 87/105 (82.86%), Query Frame = 1 
Query:   40 FGDKLRRASKLLDELQQDIFNEDWDLLATYPPAFRSLVPIFTKYTDAAFPSDDPVDKNTRVSLRYEVGRLFGAVERLKRATDAKDAVEAEAAYAAMSVAYDRYLK 354
            +GD+LRR ++ LDELQ+DIFNEDW+ +ATYP  FR+ VP+FT+YTDA F  +   D+ +RV+LRYEVGRLFGAVERLKRA + KD  EA+AA+A +SVAYDRYLK
Sbjct:   87 YGDRLRRIARTLDELQRDIFNEDWEFVATYPATFRAFVPVFTRYTDARFEGEGEADRQSRVALRYEVGRLFGAVERLKRAAEKKDPREAQAAFAQISVAYDRYLK 191
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BLAST of mRNA_P-wetherbeei_contig11367.1.1 vs. uniprot
Match: A0A7S3Y3T3_HETAK (Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3T3_HETAK)

HSP 1 Score: 147 bits (371), Expect = 1.040e-38
Identity = 69/105 (65.71%), Postives = 87/105 (82.86%), Query Frame = 1 
Query:   40 FGDKLRRASKLLDELQQDIFNEDWDLLATYPPAFRSLVPIFTKYTDAAFPSDDPVDKNTRVSLRYEVGRLFGAVERLKRATDAKDAVEAEAAYAAMSVAYDRYLK 354
            +GD+LRR ++ LDELQ+DIFNEDW+ +ATYP  FR+ VP+FT+YTDA F  +   D+ +RV+LRYEVGRLFGAVERLKRA + KD  EA+AA+A +SVAYDRYLK
Sbjct:  596 YGDRLRRIARTLDELQRDIFNEDWEFVATYPATFRAFVPVFTRYTDARFEGEGEADRQSRVALRYEVGRLFGAVERLKRAAEKKDPREAQAAFAQISVAYDRYLK 700
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BLAST of mRNA_P-wetherbeei_contig11367.1.1 vs. uniprot
Match: A0A7S2IJZ6_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IJZ6_9STRA)

HSP 1 Score: 128 bits (322), Expect = 8.040e-34
Identity = 62/119 (52.10%), Postives = 85/119 (71.43%), Query Frame = 1 
Query:   10 FGGTDALRARFG---DKLRRASKLLDELQQDIFNEDWDLLATYPPAFRSLVPIFTKYTDAAFPSDDPVDKNTRVSLRYEVGRLFGAVERLKRATDAKDAVEAEAAYAAMSVAYDRYLKV 357
            F G D  R R G   +K+R  ++++DELQ+D+  E WDL+  YPP  RS VP+FT YTD+AFPSD+P D+  RV+LRYEVGR F ++ERL++AT  +   EA  A+A MS+ +DRYL+V
Sbjct:   94 FSGKDKSRPRLGGLPNKIRGVARVMDELQRDLMQERWDLVEKYPPQIRSYVPVFTTYTDSAFPSDEPTDQGLRVALRYEVGRFFASLERLRQATSRRSLDEAYTAFADMSLHFDRYLRV 212
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BLAST of mRNA_P-wetherbeei_contig11367.1.1 vs. uniprot
Match: A0A7S2R2S4_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R2S4_9STRA)

HSP 1 Score: 125 bits (313), Expect = 5.080e-33
Identity = 61/104 (58.65%), Postives = 78/104 (75.00%), Query Frame = 1 
Query:   46 DKLRRASKLLDELQQDIFNEDWDLLATYPPAFRSLVPIFTKYTDAAFPSDDPVDKNTRVSLRYEVGRLFGAVERLKRATDAKDAVEAEAAYAAMSVAYDRYLKV 357
            +K+R+   ++DELQ+D+  E WDL+  YPP  RSLVPIFT YTDAAFPS+ P D   RV+LRYEVGR FG++ERLK+AT+ +   EA  AY+ MS+ YDRYL V
Sbjct:   54 NKIRKVGGIMDELQRDLMQERWDLVEKYPPQLRSLVPIFTTYTDAAFPSEAPSDAGLRVALRYEVGRFFGSLERLKQATNRRALNEAYLAYSDMSLHYDRYLHV 157
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BLAST of mRNA_P-wetherbeei_contig11367.1.1 vs. uniprot
Match: A0A7S4RLA6_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RLA6_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.430e-30
Identity = 57/103 (55.34%), Postives = 76/103 (73.79%), Query Frame = 1 
Query:   49 KLRRASKLLDELQQDIFNEDWDLLATYPPAFRSLVPIFTKYTDAAFPSDDPVDKNTRVSLRYEVGRLFGAVERLKRATDAKDAVEAEAAYAAMSVAYDRYLKV 357
            K+R    ++DELQ+D+  E WDL+  YP  FRS VP+FT YTD+AFPSD+P D+  RV+LRYEVGR F ++ERL++AT  +   EA  AYA MS+ +DRYL+V
Sbjct:  109 KIRGVVGIMDELQRDLMQERWDLVEKYPGQFRSYVPVFTTYTDSAFPSDEPTDQGLRVALRYEVGRFFASLERLRQATTRRSLNEAYTAYADMSLHFDRYLRV 211
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BLAST of mRNA_P-wetherbeei_contig11367.1.1 vs. uniprot
Match: B8BUB6_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BUB6_THAPS)

HSP 1 Score: 120 bits (300), Expect = 2.320e-30
Identity = 57/104 (54.81%), Postives = 76/104 (73.08%), Query Frame = 1 
Query:   46 DKLRRASKLLDELQQDIFNEDWDLLATYPPAFRSLVPIFTKYTDAAFPSDDPVDKNTRVSLRYEVGRLFGAVERLKRATDAKDAVEAEAAYAAMSVAYDRYLKV 357
            +K+R  SK++DELQ+D+  E WDL+  YP   RS VP+FT YTD+AFP+D P D+  RV+LRYEVGR F ++ERLK AT  +   EA  AY+ MS+ +DRYL+V
Sbjct:  134 NKIRGVSKVMDELQRDLMQERWDLVENYPNQLRSYVPVFTSYTDSAFPTDIPTDQGLRVALRYEVGRFFASLERLKTATSRRSINEAYVAYSDMSLHFDRYLRV 237
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BLAST of mRNA_P-wetherbeei_contig11367.1.1 vs. uniprot
Match: A0A7S3L2H9_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L2H9_9STRA)

HSP 1 Score: 115 bits (289), Expect = 2.000e-29
Identity = 56/103 (54.37%), Postives = 71/103 (68.93%), Query Frame = 1 
Query:   49 KLRRASKLLDELQQDIFNEDWDLLATYPPAFRSLVPIFTKYTDAAFPSDDPVDKNTRVSLRYEVGRLFGAVERLKRATDAKDAVEAEAAYAAMSVAYDRYLKV 357
            K+R    ++DELQ+D+  E WDL+  YP   RS VP+FT YTD AFPSD P DK  RV+LRYEVGRLF +VER   A+  +   EA  AYA M++ +DRYL+V
Sbjct:   54 KIRTVGNIMDELQRDLMQERWDLVGGYPAQLRSYVPVFTTYTDTAFPSDAPTDKGLRVALRYEVGRLFASVERFNLASSRQSLDEAYLAYADMALHFDRYLRV 156
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11367.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKJ3_ECTSI4.340e-5068.60Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0G4GSY0_VITBC1.930e-4164.55Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A7R9UEJ4_9STRA2.970e-4161.47Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S3Y3I2_HETAK3.100e-4165.71Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y3T3_HETAK1.040e-3865.71Glutamyl-tRNA(Gln) amidotransferase subunit B, mit... [more]
A0A7S2IJZ6_9STRA8.040e-3452.10Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2R2S4_9STRA5.080e-3358.65Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S4RLA6_9STRA1.430e-3055.34Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
B8BUB6_THAPS2.320e-3054.81Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S3L2H9_9STRA2.000e-2954.37Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11367contigP-wetherbeei_contig11367:1104..1969 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FKJ3
Model size363
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue7.12e-51
EggNOG OGs2BGND@1|root,2S19T@2759|Eukaryota
Cds size363
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185908.3465586-CDS-P-wetherbeei_contig11367:1103..11931683185908.3465586-CDS-P-wetherbeei_contig11367:1103..1193Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11367 1104..1193 +
1683185908.3592036-CDS-P-wetherbeei_contig11367:1384..15311683185908.3592036-CDS-P-wetherbeei_contig11367:1384..1531Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11367 1385..1531 +
1683185908.3687975-CDS-P-wetherbeei_contig11367:1843..19691683185908.3687975-CDS-P-wetherbeei_contig11367:1843..1969Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11367 1844..1969 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11367.1.1prot_P-wetherbeei_contig11367.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11367 1104..1969 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11367.1.1

>prot_P-wetherbeei_contig11367.1.1 ID=prot_P-wetherbeei_contig11367.1.1|Name=mRNA_P-wetherbeei_contig11367.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=121bp
AVAFGGTDALRARFGDKLRRASKLLDELQQDIFNEDWDLLATYPPAFRSL
VPIFTKYTDAAFPSDDPVDKNTRVSLRYEVGRLFGAVERLKRATDAKDAV
EAEAAYAAMSVAYDRYLKVCN
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mRNA from alignment at P-wetherbeei_contig11367:1104..1969+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11367.1.1 ID=mRNA_P-wetherbeei_contig11367.1.1|Name=mRNA_P-wetherbeei_contig11367.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=866bp|location=Sequence derived from alignment at P-wetherbeei_contig11367:1104..1969+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGTGGCGTTCGGAGGGACCGACGCGCTCCGAGCGCGCTTCGGTGACAA
GTTACGGCGCGCCTCTAAACTTCTCGACGAGCTTCAGCAGGTGTGCCGTT
CAGTCCTTCTCCCTAATAAGCGAAGCTCCAAATACCGATTTCCGTTGCGA
TACATAAAAGAATCGAGAGTTGAGCAAAGTGGACGATGCTACACCCCTGC
ATCTCTGCCGAGGAAATGCTGCGGCGAATGCGGGAGGTTGGTGCCTGAGG
CCTTATCTCTAACGTCGATTCTTTTTTTCAGGACATTTTCAACGAGGATT
GGGACCTCCTGGCGACGTACCCGCCAGCTTTCCGGAGCCTAGTGCCCATA
TTTACAAAATACACGGACGCTGCCTTCCCGAGCGATGACCCGGTTGACAA
GAACACACGCGTCAGCTTGCGATATGAGGTATGCCTTCTCATCCGTTGCC
GCCGCTGCATTTCGTCCTCTATCGGGAATCGGAGGCGAGTAAGGAACTAA
GAATGTGGCGGTGTGTGAGGTACTGTTCAAAGGAGCGGCCTGCATGGTAT
GCGGTTTTATCCCCCTTTCTCCCGTTTGCCTCGAACACAAAAACAACGTG
GTGATCCGGCAAGCGGTAGAGGTGCTGGGTACGCTCACAAATGAATCTTG
CGCGTACAGGACTTTGATTCATTTCATGTCGTATCGTGCAGCCAATCTCT
TCGGAAAACTCCTCCTTCCCCTTCCCTCCACTCCCCTCAGGTGGGGAGAT
TGTTTGGGGCAGTGGAGCGACTGAAGCGGGCGACGGACGCGAAGGACGCC
GTGGAGGCGGAGGCGGCGTACGCGGCCATGTCCGTCGCGTACGACCGTTA
CCTCAAGGTGTGTAAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11367:1104..1969+

>mRNA_P-wetherbeei_contig11367.1.1 ID=mRNA_P-wetherbeei_contig11367.1.1|Name=mRNA_P-wetherbeei_contig11367.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig11367:1104..1969+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGTGGCGTTCGGAGGGACCGACGCGCTCCGAGCGCGCTTCGGTGACAA
GTTACGGCGCGCCTCTAAACTTCTCGACGAGCTTCAGCAGGACATTTTCA
ACGAGGATTGGGACCTCCTGGCGACGTACCCGCCAGCTTTCCGGAGCCTA
GTGCCCATATTTACAAAATACACGGACGCTGCCTTCCCGAGCGATGACCC
GGTTGACAAGAACACACGCGTCAGCTTGCGATATGAGGTGGGGAGATTGT
TTGGGGCAGTGGAGCGACTGAAGCGGGCGACGGACGCGAAGGACGCCGTG
GAGGCGGAGGCGGCGTACGCGGCCATGTCCGTCGCGTACGACCGTTACCT
CAAGGTGTGTAAT
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