mRNA_P-wetherbeei_contig11353.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11353.2.1
Unique NamemRNA_P-wetherbeei_contig11353.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11353.2.1 vs. uniprot
Match: A0A7W1JG17_9BACT (Ankyrin repeat domain-containing protein n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=A0A7W1JG17_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 5.990e-5
Identity = 37/77 (48.05%), Postives = 46/77 (59.74%), Query Frame = 1 
Query:  598 LLLAGADIAARDRDGYTALHHAAMLSAMPTLNRLL-HLGADVEAKANQSVGGVTPLFAAFRAAQLSAVERLLEWNAD 825
             L  GADI ARD+DG+TALHHAA+  A P   R+L   GADV A+A+ S  G T L  + R     AV+ L+   AD
Sbjct:   48 FLSRGADIHARDKDGWTALHHAALGPAHPNAMRMLVKAGADVNAQAS-SPKGETALTLSARKGASEAVKELILLGAD 123
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11353.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7W1JG17_9BACT5.990e-548.05Ankyrin repeat domain-containing protein n=1 Tax=P... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11353contigP-wetherbeei_contig11353:338..1390 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LI67
PFAMsAnk_2,Ank_4
Model size828
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000108
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Descriptionspectrin binding
Cds size828
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185908.130435-CDS-P-wetherbeei_contig11353:337..5771683185908.130435-CDS-P-wetherbeei_contig11353:337..577Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11353 338..577 +
1683185908.140669-CDS-P-wetherbeei_contig11353:802..13901683185908.140669-CDS-P-wetherbeei_contig11353:802..1390Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11353 803..1390 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11353.2.1prot_P-wetherbeei_contig11353.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11353 338..1390 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11353.2.1

>prot_P-wetherbeei_contig11353.2.1 ID=prot_P-wetherbeei_contig11353.2.1|Name=mRNA_P-wetherbeei_contig11353.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=276bp
VSPLHLAVGRGDLHAVAALLEAGASTDPADLDGGTPLALAIRAGSAHMVR
LLVRFGANPEKRDGAGRSALHWAASCGHADELLKLGADPNEAPDASGLPM
LHMVIAGGGRGGSGSSSSSGGRSGGASGSGSPRGGCSGCPGGFSSAGDVS
NGGANVASGTVNGVIISTGSSGGWGSSSGSNNRSSARHEQAQRGDVVRAL
LLAGADIAARDRDGYTALHHAAMLSAMPTLNRLLHLGADVEAKANQSVGG
VTPLFAAFRAAQLSAVERLLEWNADD
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mRNA from alignment at P-wetherbeei_contig11353:338..1390+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11353.2.1 ID=mRNA_P-wetherbeei_contig11353.2.1|Name=mRNA_P-wetherbeei_contig11353.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1053bp|location=Sequence derived from alignment at P-wetherbeei_contig11353:338..1390+ (Phaeothamnion wetherbeei SAG_119_79)
GTCAGCCCGCTGCATCTGGCGGTCGGCCGCGGCGACCTCCATGCTGTCGC
GGCGCTCCTCGAGGCCGGCGCCTCCACGGACCCGGCGGATCTCGATGGCG
GCACGCCGCTGGCGCTCGCCATCCGCGCCGGCTCCGCCCACATGGTGCGG
CTCCTCGTGCGCTTCGGCGCCAACCCCGAAAAGCGCGACGGGGCCGGCCG
GTCGGCGCTCCACTGGGCGGCCAGCTGCGGACACGCCGACGTTCTCCTGG
AACTGCTGGACCTGCCATTTTTCGCGACGGCCGCCGCCCGAAACAGCCGT
GACCGCCGCGGCGCTGCGCCGCTGCATGTCGCCATCGCTGGCGGCTTTAC
GCGCTGCGCACACGCGCTCATGCACAGCCGCGGCACGGACGTTCGGGCCC
GAGACGGATCCGGCACGAGCCCGCTCCGGCTGGCTGCGGCGCGCGCCAAC
GTCGGCATGGTCAAGGAGCTGCTCAAGCTTGGGGCCGATCCAAACGAGGC
GCCGGACGCTTCCGGCCTGCCCATGCTTCACATGGTAATTGCGGGCGGCG
GCCGGGGCGGCAGCGGCAGCAGCAGTAGTAGCGGCGGCCGCAGTGGCGGC
GCCAGTGGCAGCGGCAGCCCGAGAGGCGGTTGCAGTGGCTGCCCGGGCGG
CTTCAGCAGCGCCGGCGACGTTTCGAATGGCGGTGCGAACGTTGCCAGCG
GCACCGTGAACGGCGTAATAATAAGCACCGGCAGCAGCGGCGGTTGGGGA
AGCAGCAGTGGCAGCAATAACCGCAGCAGCGCCCGCCACGAGCAGGCGCA
GCGTGGCGACGTCGTCCGCGCTCTGCTGCTGGCCGGCGCCGACATTGCCG
CCCGCGACCGTGACGGCTACACCGCGTTACACCACGCCGCCATGCTCTCG
GCGATGCCCACTCTCAATCGCCTGCTTCACCTCGGCGCGGACGTCGAGGC
GAAGGCCAATCAAAGCGTCGGCGGCGTCACGCCGCTATTTGCGGCGTTTC
GGGCGGCGCAGCTGTCGGCCGTCGAGCGGCTGCTGGAGTGGAACGCTGAC
GAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11353:338..1390+

>mRNA_P-wetherbeei_contig11353.2.1 ID=mRNA_P-wetherbeei_contig11353.2.1|Name=mRNA_P-wetherbeei_contig11353.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=828bp|location=Sequence derived from alignment at P-wetherbeei_contig11353:338..1390+ (Phaeothamnion wetherbeei SAG_119_79)
GTCAGCCCGCTGCATCTGGCGGTCGGCCGCGGCGACCTCCATGCTGTCGC
GGCGCTCCTCGAGGCCGGCGCCTCCACGGACCCGGCGGATCTCGATGGCG
GCACGCCGCTGGCGCTCGCCATCCGCGCCGGCTCCGCCCACATGGTGCGG
CTCCTCGTGCGCTTCGGCGCCAACCCCGAAAAGCGCGACGGGGCCGGCCG
GTCGGCGCTCCACTGGGCGGCCAGCTGCGGACACGCCGACGAGCTGCTCA
AGCTTGGGGCCGATCCAAACGAGGCGCCGGACGCTTCCGGCCTGCCCATG
CTTCACATGGTAATTGCGGGCGGCGGCCGGGGCGGCAGCGGCAGCAGCAG
TAGTAGCGGCGGCCGCAGTGGCGGCGCCAGTGGCAGCGGCAGCCCGAGAG
GCGGTTGCAGTGGCTGCCCGGGCGGCTTCAGCAGCGCCGGCGACGTTTCG
AATGGCGGTGCGAACGTTGCCAGCGGCACCGTGAACGGCGTAATAATAAG
CACCGGCAGCAGCGGCGGTTGGGGAAGCAGCAGTGGCAGCAATAACCGCA
GCAGCGCCCGCCACGAGCAGGCGCAGCGTGGCGACGTCGTCCGCGCTCTG
CTGCTGGCCGGCGCCGACATTGCCGCCCGCGACCGTGACGGCTACACCGC
GTTACACCACGCCGCCATGCTCTCGGCGATGCCCACTCTCAATCGCCTGC
TTCACCTCGGCGCGGACGTCGAGGCGAAGGCCAATCAAAGCGTCGGCGGC
GTCACGCCGCTATTTGCGGCGTTTCGGGCGGCGCAGCTGTCGGCCGTCGA
GCGGCTGCTGGAGTGGAACGCTGACGAC
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