mRNA_P-wetherbeei_contig11352.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11352.1.1
Unique NamemRNA_P-wetherbeei_contig11352.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11352.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11352contigP-wetherbeei_contig11352:813..1883 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size690
Hectar predicted targeting categoryother localisation
Exons3
Cds size678
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185908.0764465-CDS-P-wetherbeei_contig11352:812..12801683185908.0764465-CDS-P-wetherbeei_contig11352:812..1280Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11352 813..1280 -
1683185908.0842755-CDS-P-wetherbeei_contig11352:1526..16431683185908.0842755-CDS-P-wetherbeei_contig11352:1526..1643Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11352 1527..1643 -
1683185908.0918925-CDS-P-wetherbeei_contig11352:1778..18711683185908.0918925-CDS-P-wetherbeei_contig11352:1778..1871Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11352 1779..1871 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185908.100897-UTR-P-wetherbeei_contig11352:1871..18831683185908.100897-UTR-P-wetherbeei_contig11352:1871..1883Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11352 1872..1883 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11352.1.1prot_P-wetherbeei_contig11352.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11352 813..1871 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11352.1.1

>prot_P-wetherbeei_contig11352.1.1 ID=prot_P-wetherbeei_contig11352.1.1|Name=mRNA_P-wetherbeei_contig11352.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=226bp
MMRKANDGHFPREVEVVPRDAVLRLRELENLDDAPFLRHAKKCLHPGAPG
YPTRFSGDEGLPRRHRNSRKARGGTRRDRDPGRPQCPLLFFLPPPAANPG
RDVRPHLKGRAAFAMAAAAARSAAAAATAAGKAAAGPPGAPGPVASAGPA
VAAAAALLAKCSWDHVGRDGSASERAPSGAEHRGGGDGGGGVDGNGRESG
ASGDGGEDDTTDSEEVWSGGSGGEWG
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mRNA from alignment at P-wetherbeei_contig11352:813..1883-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11352.1.1 ID=mRNA_P-wetherbeei_contig11352.1.1|Name=mRNA_P-wetherbeei_contig11352.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1071bp|location=Sequence derived from alignment at P-wetherbeei_contig11352:813..1883- (Phaeothamnion wetherbeei SAG_119_79)
AGATAGAGACATATGATGAGGAAGGCTAACGACGGGCATTTCCCCCGCGA
GGTGGAGGTCGTCCCTCGCGACGCGGTCCTGCGTTTGCGAGAGCTCGAAA
ACTTGGTACGATCCAAACTTCTCGACAATCCCGCTCAACCAGCATCTCTT
CTACAATCCGCTTCACGTTCCATTCGCACTGTCGAGCTAACTTCGCGTAC
TCTTACTTTGTATTGTCCTCTTGTTTCTCTGGTTTTGCAGGATGATGCGC
CGTTCCTGCGTCACGCCAAGAAGTGCCTGCATCCGGGAGCCCCCGGATAT
CCGACGCGCTTTTCGGGTGACGAGGGTTTGCCTCGCCGACATCGAAACTC
GAGAAAGGTGTGCATCCCTGCGGTGCAAACTCTTCTGCAAGCGTGCAATG
CAAACTCTTCTGCCAAGTTCGGCCATTCTAGTATCGCTACTGACGTCCGT
CGGCCACAGGTTCTCAGGAAGGGCTGACATGTGCTTGAAGCTCTACATCC
GACAAGGAGAACCAATGCTTGAAGTGCCTCGACGCCAGAACGTTGTCAGA
TGGTTCCTCCTCTCTCCCTTCTCTCCTTCTCGTCCTTTTTCACTGCCCCA
CAGGCAAGAGGCGGCACCCGCAGGGACAGAGATCCGGGTCGGCCGCAATG
TCCACTGTTGTTTTTCCTGCCGCCCCCGGCAGCAAATCCCGGACGCGACG
TCAGGCCGCACCTGAAGGGACGTGCGGCCTTTGCCATGGCAGCCGCGGCG
GCGAGGTCAGCGGCGGCAGCGGCGACGGCAGCCGGAAAAGCGGCTGCCGG
GCCCCCCGGAGCGCCGGGGCCGGTGGCATCCGCTGGACCGGCGGTAGCGG
CCGCAGCGGCGCTGCTAGCCAAATGCAGCTGGGACCATGTCGGAAGGGAC
GGTTCAGCATCCGAACGCGCACCTTCGGGCGCCGAACATCGCGGCGGCGG
CGACGGCGGCGGCGGTGTTGATGGTAACGGCCGCGAGAGCGGTGCGAGCG
GCGATGGCGGCGAGGACGACACGACCGACAGCGAGGAAGTGTGGTCTGGC
GGAAGCGGCGGCGAGTGGGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11352:813..1883-

>mRNA_P-wetherbeei_contig11352.1.1 ID=mRNA_P-wetherbeei_contig11352.1.1|Name=mRNA_P-wetherbeei_contig11352.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=678bp|location=Sequence derived from alignment at P-wetherbeei_contig11352:813..1883- (Phaeothamnion wetherbeei SAG_119_79)
ATGATGAGGAAGGCTAACGACGGGCATTTCCCCCGCGAGGTGGAGGTCGT
CCCTCGCGACGCGGTCCTGCGTTTGCGAGAGCTCGAAAACTTGGATGATG
CGCCGTTCCTGCGTCACGCCAAGAAGTGCCTGCATCCGGGAGCCCCCGGA
TATCCGACGCGCTTTTCGGGTGACGAGGGTTTGCCTCGCCGACATCGAAA
CTCGAGAAAGGCAAGAGGCGGCACCCGCAGGGACAGAGATCCGGGTCGGC
CGCAATGTCCACTGTTGTTTTTCCTGCCGCCCCCGGCAGCAAATCCCGGA
CGCGACGTCAGGCCGCACCTGAAGGGACGTGCGGCCTTTGCCATGGCAGC
CGCGGCGGCGAGGTCAGCGGCGGCAGCGGCGACGGCAGCCGGAAAAGCGG
CTGCCGGGCCCCCCGGAGCGCCGGGGCCGGTGGCATCCGCTGGACCGGCG
GTAGCGGCCGCAGCGGCGCTGCTAGCCAAATGCAGCTGGGACCATGTCGG
AAGGGACGGTTCAGCATCCGAACGCGCACCTTCGGGCGCCGAACATCGCG
GCGGCGGCGACGGCGGCGGCGGTGTTGATGGTAACGGCCGCGAGAGCGGT
GCGAGCGGCGATGGCGGCGAGGACGACACGACCGACAGCGAGGAAGTGTG
GTCTGGCGGAAGCGGCGGCGAGTGGGGG
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