mRNA_P-wetherbeei_contig11351.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11351.2.1
Unique NamemRNA_P-wetherbeei_contig11351.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11351.2.1 vs. uniprot
Match: D8LKV0_ECTSI (High mobility group protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKV0_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 7.250e-40
Identity = 75/127 (59.06%), Postives = 91/127 (71.65%), Query Frame = 1
Query:    1 QATEVMRVIAEMWRGLDENSKKIYVAKSLEDKQRYEDELASYDGPLKVPNKRAKKDPDAPKRAMSAFLHFSQERRPVLKAQFPEEKNIEISKKLGLEWGCLSAEQRAPYQAKSDADAARYRADMKKW 381
            + TEVM+ IA  WR L E  K+ + AK+ +DK RYE EL+ YDGPLKVPNKRAKKDP APKRAMSAFLHFSQ  RP L+  +PE KN+++SK LG EW  +S E++ PYQ K+  D  RYR  M  W
Sbjct:   81 KVTEVMKGIAAKWRELSETDKEEWTAKAAQDKDRYEQELSVYDGPLKVPNKRAKKDPLAPKRAMSAFLHFSQSMRPRLRETYPEAKNMDMSKMLGQEWNRMSDEEKLPYQTKAHDDTLRYREAMTVW 207          
BLAST of mRNA_P-wetherbeei_contig11351.2.1 vs. uniprot
Match: A0A5D6YAG9_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YAG9_9STRA)

HSP 1 Score: 132 bits (332), Expect = 7.650e-36
Identity = 69/127 (54.33%), Postives = 92/127 (72.44%), Query Frame = 1
Query:    1 QATEVMRVIAEMWRGLDENSKKIYVAKSLEDKQRYEDELASYDGPLKVPNKRAKKDPDAPKRAMSAFLHFSQERRPVLKAQFPEEKNIEISKKLGLEWGCLSAEQRAPYQAKSDADAARYRADMKKW 381
            + T+VMR IA+ W  + +  K+ + A +  DKQRYE+E+ASYDGPL+VPNKRAKK PDAPKRA SAFL +SQ  RP +KA+  + KN EISK+LG  WG  + EQ+AP+  K   D ARY+ +M++W
Sbjct:   86 KVTDVMRAIADAWAKMTDEDKQPWKAAAESDKQRYEEEMASYDGPLRVPNKRAKKHPDAPKRASSAFLFYSQVMRPRIKAEHQDMKNTEISKQLGEAWGKATDEQKAPFVEKEKLDRARYKREMEEW 212          
BLAST of mRNA_P-wetherbeei_contig11351.2.1 vs. uniprot
Match: K3WVY6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WVY6_GLOUD)

HSP 1 Score: 130 bits (327), Expect = 2.210e-35
Identity = 68/127 (53.54%), Postives = 92/127 (72.44%), Query Frame = 1
Query:    1 QATEVMRVIAEMWRGLDENSKKIYVAKSLEDKQRYEDELASYDGPLKVPNKRAKKDPDAPKRAMSAFLHFSQERRPVLKAQFPEEKNIEISKKLGLEWGCLSAEQRAPYQAKSDADAARYRADMKKW 381
            + T+VMR IA+ W  + ++ K+ + A +  DKQRYE+E+ASYDGPL+VPNKRAKK PDAPKRA SAFL +SQ  RP +KA+  + KN EISK+LG  W   + EQ+AP+  K   D ARY+ +M++W
Sbjct:   61 KVTDVMRAIADAWAKMSDDDKQPWKAAAEADKQRYEEEMASYDGPLRVPNKRAKKHPDAPKRASSAFLFYSQVMRPRIKAEHQDMKNTEISKQLGEAWSKATDEQKAPFVEKEKLDRARYKREMEEW 187          
BLAST of mRNA_P-wetherbeei_contig11351.2.1 vs. uniprot
Match: A0A7S2UYP1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYP1_9STRA)

HSP 1 Score: 128 bits (322), Expect = 5.900e-35
Identity = 66/127 (51.97%), Postives = 92/127 (72.44%), Query Frame = 1
Query:    1 QATEVMRVIAEMWRGLDENSKKIYVAKSLEDKQRYEDELASYDGPLKVPNKRAKKDPDAPKRAMSAFLHFSQERRPVLKAQFPEEKNIEISKKLGLEWGCLSAEQRAPYQAKSDADAARYRADMKKW 381
            + T+VM+ +A +WR LDE  +K +VAK+  D+ R+++E++ Y+GPLK+PN+RAKK+P+APKRAMSAFLHFS E RP LK Q P+  +++ISK LG  W  L  E + PY  KS  D  RYRA++  W
Sbjct:   58 KVTDVMKAVAALWRQLDEEGRKEFVAKAEMDRARFQEEMSIYEGPLKIPNRRAKKNPNAPKRAMSAFLHFSIEYRPKLKEQNPQLTHLQISKLLGDTWNALPQETKDPYVEKSRIDNQRYRAEIATW 184          
BLAST of mRNA_P-wetherbeei_contig11351.2.1 vs. uniprot
Match: M4BDC0_HYAAE (Uncharacterized protein n=22 Tax=Peronosporaceae TaxID=4777 RepID=M4BDC0_HYAAE)

HSP 1 Score: 129 bits (325), Expect = 9.960e-35
Identity = 67/127 (52.76%), Postives = 92/127 (72.44%), Query Frame = 1
Query:    1 QATEVMRVIAEMWRGLDENSKKIYVAKSLEDKQRYEDELASYDGPLKVPNKRAKKDPDAPKRAMSAFLHFSQERRPVLKAQFPEEKNIEISKKLGLEWGCLSAEQRAPYQAKSDADAARYRADMKKW 381
            + T+VMR IA+ W  + ++ K+ +   +  DKQRYE+E+A+YDGPL+VPNKRAKK PDAPKRA SAFL +SQ  RP +KA+  + KN EISK+LG  WG  + EQ+AP+  K   D ARY+ +M++W
Sbjct:   93 KVTDVMRAIADAWGKMGDDDKQPWKVAAEADKQRYEEEMAAYDGPLRVPNKRAKKHPDAPKRASSAFLFYSQVMRPRIKAEHQDMKNTEISKQLGEAWGKATDEQKAPFVEKEKVDRARYKREMEEW 219          
BLAST of mRNA_P-wetherbeei_contig11351.2.1 vs. uniprot
Match: F0W3U4_9STRA (High mobility group protein putative n=2 Tax=Albugo TaxID=65356 RepID=F0W3U4_9STRA)

HSP 1 Score: 128 bits (321), Expect = 2.010e-34
Identity = 67/127 (52.76%), Postives = 91/127 (71.65%), Query Frame = 1
Query:    1 QATEVMRVIAEMWRGLDENSKKIYVAKSLEDKQRYEDELASYDGPLKVPNKRAKKDPDAPKRAMSAFLHFSQERRPVLKAQFPEEKNIEISKKLGLEWGCLSAEQRAPYQAKSDADAARYRADMKKW 381
            + T+VMR IA+ W  + E+ K+ + + +  DKQRYE+E+ASYDGPL+VPNKRAKKDP APKRA SAFL +SQ  RP LK + P+ KN +ISK+LG  W   +  Q+APY  K   D +RY+ +M++W
Sbjct:   64 KVTDVMRAIADAWSKMSEDEKQPWKSAAEVDKQRYEEEMASYDGPLRVPNKRAKKDPSAPKRASSAFLFYSQVMRPQLKKENPDLKNTDISKRLGEAWSKATDVQKAPYVEKEREDRSRYKREMEEW 190          
BLAST of mRNA_P-wetherbeei_contig11351.2.1 vs. uniprot
Match: A0A3R7KJP5_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KJP5_9STRA)

HSP 1 Score: 128 bits (322), Expect = 2.090e-34
Identity = 67/127 (52.76%), Postives = 90/127 (70.87%), Query Frame = 1
Query:    1 QATEVMRVIAEMWRGLDENSKKIYVAKSLEDKQRYEDELASYDGPLKVPNKRAKKDPDAPKRAMSAFLHFSQERRPVLKAQFPEEKNIEISKKLGLEWGCLSAEQRAPYQAKSDADAARYRADMKKW 381
            + T+VMR IA+ W  + +  K+ +   +  DKQRYE+E+ASYDGPL+VPNKRAKK PDAPKRA SAFL +SQ  RP +KA+  + KN EISK+LG  W   + EQ+AP+  K   D ARY+ +M++W
Sbjct:   64 KVTDVMRAIADAWGKMSDEDKQPWKVAAEADKQRYEEEMASYDGPLRVPNKRAKKHPDAPKRASSAFLFYSQVMRPRIKAEHQDMKNTEISKQLGEAWAKATDEQKAPFVEKEKVDRARYKREMEEW 190          
BLAST of mRNA_P-wetherbeei_contig11351.2.1 vs. uniprot
Match: A0A8K1CAL6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CAL6_PYTOL)

HSP 1 Score: 127 bits (318), Expect = 4.870e-34
Identity = 65/127 (51.18%), Postives = 90/127 (70.87%), Query Frame = 1
Query:    1 QATEVMRVIAEMWRGLDENSKKIYVAKSLEDKQRYEDELASYDGPLKVPNKRAKKDPDAPKRAMSAFLHFSQERRPVLKAQFPEEKNIEISKKLGLEWGCLSAEQRAPYQAKSDADAARYRADMKKW 381
            + T++MR IA  W  + ++ K+ +   + +DKQRYE+E+ASYDGPL+VPNKRAKK P+APKRA SAFL +SQ  RP +KA  P+ KN EISK+LG  WG  +  Q+AP+  K   D  RY+ +M++W
Sbjct:   63 KVTDIMRAIANAWAKMSDDDKQPWKLAAEQDKQRYEEEMASYDGPLRVPNKRAKKHPEAPKRASSAFLFYSQVMRPRIKADHPDMKNTEISKQLGEAWGKATEAQKAPFIEKEKEDRDRYKREMEEW 189          
BLAST of mRNA_P-wetherbeei_contig11351.2.1 vs. uniprot
Match: A0A024U6C4_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024U6C4_9STRA)

HSP 1 Score: 127 bits (318), Expect = 5.260e-34
Identity = 66/127 (51.97%), Postives = 90/127 (70.87%), Query Frame = 1
Query:    1 QATEVMRVIAEMWRGLDENSKKIYVAKSLEDKQRYEDELASYDGPLKVPNKRAKKDPDAPKRAMSAFLHFSQERRPVLKAQFPEEKNIEISKKLGLEWGCLSAEQRAPYQAKSDADAARYRADMKKW 381
            + T+VMR IA+ W  + E+ K  +   +  DKQRYE+E+A+YDGPL+VPNKRAKK P+APKRA SAFL +SQ  RP +K++  E KN EISK+LG  WG  +  Q+AP+  K   D ARY+ +M++W
Sbjct:   64 KVTDVMRAIADAWSKMSEDEKAPWKTAAESDKQRYEEEMATYDGPLRVPNKRAKKHPNAPKRASSAFLFYSQVMRPRIKSEHQEMKNTEISKQLGEAWGKATKAQKAPFVEKEKEDRARYKREMEEW 190          
BLAST of mRNA_P-wetherbeei_contig11351.2.1 vs. uniprot
Match: A0A067C9M6_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C9M6_SAPPC)

HSP 1 Score: 124 bits (311), Expect = 5.640e-33
Identity = 65/127 (51.18%), Postives = 88/127 (69.29%), Query Frame = 1
Query:    1 QATEVMRVIAEMWRGLDENSKKIYVAKSLEDKQRYEDELASYDGPLKVPNKRAKKDPDAPKRAMSAFLHFSQERRPVLKAQFPEEKNIEISKKLGLEWGCLSAEQRAPYQAKSDADAARYRADMKKW 381
            + T+VMR IA+ W  + E  K  +   +  DKQRYE+E+A+YDGPL+VPNKRAKK P+APKRA SAFL +SQ  RP +KA+  + KN EISK+LG  W   +  Q+AP+  K   D ARY+ +M++W
Sbjct:   60 KVTDVMRAIADAWSKMSEEEKAPWKLSAESDKQRYEEEMATYDGPLRVPNKRAKKHPNAPKRASSAFLFYSQVMRPRIKAEHADMKNTEISKQLGEAWAKATKAQKAPFVEKEKEDRARYKREMEEW 186          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11351.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKV0_ECTSI7.250e-4059.06High mobility group protein n=2 Tax=Ectocarpus Tax... [more]
A0A5D6YAG9_9STRA7.650e-3654.33Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
K3WVY6_GLOUD2.210e-3553.54Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7S2UYP1_9STRA5.900e-3551.97Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
M4BDC0_HYAAE9.960e-3552.76Uncharacterized protein n=22 Tax=Peronosporaceae T... [more]
F0W3U4_9STRA2.010e-3452.76High mobility group protein putative n=2 Tax=Albug... [more]
A0A3R7KJP5_9STRA2.090e-3452.76Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A8K1CAL6_PYTOL4.870e-3451.18Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A024U6C4_9STRA5.260e-3451.97Uncharacterized protein n=4 Tax=Aphanomyces TaxID=... [more]
A0A067C9M6_SAPPC5.640e-3351.18Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11351contigP-wetherbeei_contig11351:572..1392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LKV0
PFAMsHMG_box
Model size387
Max annot lvl2759|Eukaryota
KEGG koko:K09273
Hectar predicted targeting categoryother localisation
Exons2
Evalue8.9e-39
EggNOG OGsCOG5648@1|root,KOG0381@2759|Eukaryota
Ec32 ortholog descriptionHigh mobility group domain protein
Ec32 orthologEc-11_005660.1
DescriptionDNA binding
Cds size372
COG categoryB
BRITEko00000,ko03000,ko03021
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185908.0258226-UTR-P-wetherbeei_contig11351:571..5861683185908.0258226-UTR-P-wetherbeei_contig11351:571..586Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11351 572..586 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185908.0358431-CDS-P-wetherbeei_contig11351:586..7121683185908.0358431-CDS-P-wetherbeei_contig11351:586..712Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11351 587..712 +
1683185908.0439584-CDS-P-wetherbeei_contig11351:1146..13921683185908.0439584-CDS-P-wetherbeei_contig11351:1146..1392Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11351 1147..1392 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11351.2.1prot_P-wetherbeei_contig11351.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11351 587..1392 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11351.2.1

>prot_P-wetherbeei_contig11351.2.1 ID=prot_P-wetherbeei_contig11351.2.1|Name=mRNA_P-wetherbeei_contig11351.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=124bp
MRVIAEMWRGLDENSKKIYVAKSLEDKQRYEDELASYDGPLKVPNKRAKK
DPDAPKRAMSAFLHFSQERRPVLKAQFPEEKNIEISKKLGLEWGCLSAEQ
RAPYQAKSDADAARYRADMKKWTA
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mRNA from alignment at P-wetherbeei_contig11351:572..1392+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11351.2.1 ID=mRNA_P-wetherbeei_contig11351.2.1|Name=mRNA_P-wetherbeei_contig11351.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=821bp|location=Sequence derived from alignment at P-wetherbeei_contig11351:572..1392+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGCGACGGAGGTGATGCGGGTGATTGCGGAGATGTGGCGCGGCCTGGA CGAAAACTCGAAGAAGATCTACGTCGCCAAGTCGCTGGAGGACAAGCAAC GCTACGAGGACGAGCTCGCCAGCTACGACGGCCCGCTCAAGGTGAGAGAG AGGCTGGGAATATGGTGGAGAGGAGGAAGGGAACCGTTATGGTGGAAAGG AGGAAGGGAACCGTTTCGGCGATTTCGGCAGTTTCGTGGGTTTTGTGGCC GCTTCAATGCCGTACGAAGGTGGGGGTCGCCCTTTCATGTAAGGCAACGT CAAGACAACCTTAGACGTCAATCTAGGCTGACAAGGAGCTCCGCCTCTTT TACAGTGCCGCCTCAGTTTGGCCAGCCCTTTTCGCAGTTTATCAGCTGCA TGATAATCACCGCCTCAATACAAGGAAAATGGATGGGAAAGGGTCTTCTC TGCCCAAGTCAACCAGTCGCGATCGCCGTCCCTAACGTCCCCAAGCTGCT CCCATCCACTCGAACCCCTGCCTGTGTCATGACGCTCCGGTTCTGGCGCA AACAACCACAAACGACAATATACAGGTGCCAAACAAGCGCGCCAAGAAGG ACCCCGACGCGCCGAAGCGGGCCATGTCAGCATTCCTGCATTTCTCGCAG GAACGGCGGCCCGTCTTGAAGGCCCAGTTCCCTGAGGAGAAGAATATTGA GATCAGCAAGAAGCTCGGGCTCGAGTGGGGCTGTCTGAGCGCCGAGCAGC GGGCGCCGTATCAGGCCAAGTCCGATGCGGACGCGGCGCGCTACCGGGCG GACATGAAGAAGTGGACTGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11351:572..1392+

>mRNA_P-wetherbeei_contig11351.2.1 ID=mRNA_P-wetherbeei_contig11351.2.1|Name=mRNA_P-wetherbeei_contig11351.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=372bp|location=Sequence derived from alignment at P-wetherbeei_contig11351:572..1392+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGGTGATTGCGGAGATGTGGCGCGGCCTGGACGAAAACTCGAAGAA
GATCTACGTCGCCAAGTCGCTGGAGGACAAGCAACGCTACGAGGACGAGC
TCGCCAGCTACGACGGCCCGCTCAAGGTGCCAAACAAGCGCGCCAAGAAG
GACCCCGACGCGCCGAAGCGGGCCATGTCAGCATTCCTGCATTTCTCGCA
GGAACGGCGGCCCGTCTTGAAGGCCCAGTTCCCTGAGGAGAAGAATATTG
AGATCAGCAAGAAGCTCGGGCTCGAGTGGGGCTGTCTGAGCGCCGAGCAG
CGGGCGCCGTATCAGGCCAAGTCCGATGCGGACGCGGCGCGCTACCGGGC
GGACATGAAGAAGTGGACTGCC
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