mRNA_P-wetherbeei_contig11350.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig11350.1.1 vs. uniprot
Match: A0A812K9S6_9DINO (DNA-(apurinic or apyrimidinic site) endonuclease n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A812K9S6_9DINO) HSP 1 Score: 94.7 bits (234), Expect = 2.090e-20 Identity = 52/111 (46.85%), Postives = 67/111 (60.36%), Query Frame = 1 Query: 1 PRTIIAWNANGLTSRLTGEPTAFLEFMREHEPDVLCIQEVRLPAHGPPKSTRGDGAPRNRGTVKAGTKTERADSDLLTRYL--NRLSDYEPVFSLADTKYAGTAMLISRRM 327 P+ II+WN NGL +L + +F+ EPDVLC+QEVRLPA GP RGDG R+RG K + E+AD DL+ R L Y +SLAD KY+GT M+I R + Sbjct: 47 PQKIISWNVNGLAVQLRNNWSLIKQFLENEEPDVLCLQEVRLPAAGPKGCKRGDGQKRSRGEAKYDSAQEKADWDLVQRTLVATYAKTYSFHWSLADWKYSGTLMMIRRSL 157
BLAST of mRNA_P-wetherbeei_contig11350.1.1 vs. uniprot
Match: A0A812Y8A6_SYMMI (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Y8A6_SYMMI) HSP 1 Score: 95.1 bits (235), Expect = 2.860e-20 Identity = 53/111 (47.75%), Postives = 68/111 (61.26%), Query Frame = 1 Query: 1 PRTIIAWNANGLTSRLTGEPTAFLEFMREHEPDVLCIQEVRLPAHGPPKSTRGDGAPRNRGTVKAGTKTERADSDLLTRYL--NRLSDYEPVFSLADTKYAGTAMLISRRM 327 P+ II+WNANGL +L + +F+ +PDVLC+QEVRLPA GP RGDG R+RG K + E+AD DL+ R L Y +SLAD KYAGT M+I R + Sbjct: 46 PQKIISWNANGLAVQLRNNWSLIKQFLENEDPDVLCLQEVRLPAAGPKGCKRGDGQKRSRGEAKYDSAQEKADWDLVQRTLVATFAKMYSFHWSLADWKYAGTLMMIRRSL 156
BLAST of mRNA_P-wetherbeei_contig11350.1.1 vs. uniprot
Match: A0A813A5S0_9DINO (APE1L protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813A5S0_9DINO) HSP 1 Score: 95.1 bits (235), Expect = 2.960e-20 Identity = 53/111 (47.75%), Postives = 68/111 (61.26%), Query Frame = 1 Query: 1 PRTIIAWNANGLTSRLTGEPTAFLEFMREHEPDVLCIQEVRLPAHGPPKSTRGDGAPRNRGTVKAGTKTERADSDLLTRYL--NRLSDYEPVFSLADTKYAGTAMLISRRM 327 P+ II+WNANGL +L + +F+ +PDVLC+QEVRLPA GP RGDG R+RG K + E+AD DL+ R L Y +SLAD KYAGT M+I R + Sbjct: 46 PQKIISWNANGLAVQLRNNWSLIKQFLENEDPDVLCLQEVRLPAAGPKGCKRGDGQKRSRGEAKYDSAQEKADWDLVQRTLVATFAKMYSFHWSLADWKYAGTLMMIRRSL 156
BLAST of mRNA_P-wetherbeei_contig11350.1.1 vs. uniprot
Match: A0A812P0L7_9DINO (APE1L protein n=2 Tax=unclassified Symbiodinium TaxID=279888 RepID=A0A812P0L7_9DINO) HSP 1 Score: 94.0 bits (232), Expect = 7.500e-20 Identity = 52/111 (46.85%), Postives = 67/111 (60.36%), Query Frame = 1 Query: 1 PRTIIAWNANGLTSRLTGEPTAFLEFMREHEPDVLCIQEVRLPAHGPPKSTRGDGAPRNRGTVKAGTKTERADSDLLTRYL--NRLSDYEPVFSLADTKYAGTAMLISRRM 327 P+ II+WN NGL +L + +F+ EPDVLC+QEVRLPA GP RGDG R+RG K + E+AD DL+ R L Y +SLAD KY+GT M+I R + Sbjct: 47 PQKIISWNVNGLAVQLRNNWSLIKQFLETEEPDVLCLQEVRLPAAGPKGCKRGDGQKRSRGEAKCDSAQEKADWDLVQRTLVATFAKMYSFHWSLADWKYSGTLMMIRRSL 157
BLAST of mRNA_P-wetherbeei_contig11350.1.1 vs. uniprot
Match: A0A7S1X753_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X753_9CHLO) HSP 1 Score: 90.9 bits (224), Expect = 9.690e-20 Identity = 50/111 (45.05%), Postives = 72/111 (64.86%), Query Frame = 1 Query: 1 PRTIIAWNANGLTSRL-TGEPTAFLEFMR-EHEPDVLCIQEVRLPAHGPPKSTRGDGAPRNRGTVKAGTKTERADSDLLTRYLN--RLSDYEPVFSLADTKYAGTAMLISR 321 PRT++ WN NGLT R + + A L+ M ++PDV+ IQEVR+PA P + +GDG PR+R T T R D+D++ + L L++YE +SLAD KYAG+A+L+ R Sbjct: 45 PRTLMTWNCNGLTCRAQSAQQVAELQAMLWANQPDVVAIQEVRMPASAPKGAKKGDGQPRSRTVPNTNTPTGRKDADMVGKLLRSKELANYEVFYSLADWKYAGSALLVRR 155
BLAST of mRNA_P-wetherbeei_contig11350.1.1 vs. uniprot
Match: A0A0E0EJE7_9ORYZ (Uncharacterized protein n=1 Tax=Oryza meridionalis TaxID=40149 RepID=A0A0E0EJE7_9ORYZ) HSP 1 Score: 88.6 bits (218), Expect = 2.450e-19 Identity = 49/127 (38.58%), Postives = 75/127 (59.06%), Query Frame = 1 Query: 1 PRTIIAWNANGLTSRLTGEPTAFLEFMREHEPDVLCIQEVRLPAHGPPKSTRGDGAPRNRGTVKAGTKTERADSDLLTRYLNR--LSDYEPVFSLADTKYAGTAMLISRRMGGRRALKGLRFSLDWT 375 PR + WNAN L R+ + AF +F+ +PDV+C+QEVR+PA G GAP+N G +K T + R + ++ R L+ DY +SL+D+KYAGTAM+I ++ ++ + F+LD T Sbjct: 56 PRRFVTWNANSLLLRMKSDWPAFCQFVSRVDPDVICVQEVRMPAAG------SKGAPKNPGQLKDDTSSSRDEKQVVLRALSSPPFKDYRVWWSLSDSKYAGTAMIIKKKFEPKK----VSFNLDRT 172
BLAST of mRNA_P-wetherbeei_contig11350.1.1 vs. uniprot
Match: Q2QTX4_ORYSJ (DNA-(apurinic or apyrimidinic site) endonuclease n=5 Tax=Oryza TaxID=4527 RepID=Q2QTX4_ORYSJ) HSP 1 Score: 88.6 bits (218), Expect = 2.920e-18 Identity = 49/127 (38.58%), Postives = 75/127 (59.06%), Query Frame = 1 Query: 1 PRTIIAWNANGLTSRLTGEPTAFLEFMREHEPDVLCIQEVRLPAHGPPKSTRGDGAPRNRGTVKAGTKTERADSDLLTRYLNR--LSDYEPVFSLADTKYAGTAMLISRRMGGRRALKGLRFSLDWT 375 PR + WNAN L R+ + AF +F+ +PDV+C+QEVR+PA G GAP+N G +K T + R + ++ R L+ DY +SL+D+KYAGTAM+I ++ ++ + F+LD T Sbjct: 59 PRRFVTWNANSLLLRMKSDWPAFCQFVSRVDPDVICVQEVRMPAAG------SKGAPKNPGQLKDDTSSSRDEKQVVLRALSSPPFKDYRVWWSLSDSKYAGTAMIIKKKFEPKK----VSFNLDRT 175
BLAST of mRNA_P-wetherbeei_contig11350.1.1 vs. uniprot
Match: A0A0D9XYH2_9ORYZ (DNA-(apurinic or apyrimidinic site) endonuclease n=9 Tax=Oryzinae TaxID=1648021 RepID=A0A0D9XYH2_9ORYZ) HSP 1 Score: 86.7 bits (213), Expect = 1.270e-17 Identity = 48/127 (37.80%), Postives = 74/127 (58.27%), Query Frame = 1 Query: 1 PRTIIAWNANGLTSRLTGEPTAFLEFMREHEPDVLCIQEVRLPAHGPPKSTRGDGAPRNRGTVKAGTKTERADSDLLTRYLNR--LSDYEPVFSLADTKYAGTAMLISRRMGGRRALKGLRFSLDWT 375 PR + WNAN L R+ + AF +F+ +PDV+C+QEVR+PA G GAP+N +K T + R + ++ R L+ DY +SL+D+KYAGTAM+I ++ ++ + F+LD T Sbjct: 40 PRRFVTWNANSLLLRMKSDWPAFCQFVSRVDPDVICVQEVRIPAAG------SKGAPKNPSELKDDTSSSREEKQVVLRALSSPPFKDYRVWWSLSDSKYAGTAMIIKKKFEPKK----VSFNLDRT 156
BLAST of mRNA_P-wetherbeei_contig11350.1.1 vs. uniprot
Match: A0A7S0JI33_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JI33_9EUKA) HSP 1 Score: 84.7 bits (208), Expect = 1.990e-17 Identity = 43/120 (35.83%), Postives = 71/120 (59.17%), Query Frame = 1 Query: 10 IIAWNANGLTSRLTGEPTAFLEFMREHEPDVLCIQEVRLPAHGPPKSTRGDGAPRNRGTVKAGTKTERADSDLLTRYLNRLSDYEPVFSLADTKYAGTAMLISRRMGGRRALKGLRFSLD 369 + AWNAN L +R+ + +A F+ PD++ + EVR+PA GPP + D PR RG + + + ++D + +L R +Y ++L+D+KYAGTA+L+ RR + LR++LD Sbjct: 67 LCAWNANSLLNRIEKDQSALSAFLTTESPDLILVSEVRMPAAGPPACKKDDKQPRRRGEMSKASAAQSREADAIASFL-RAHNYRAYYTLSDSKYAGTALLV-RRDRAQPDAATLRYTLD 184
BLAST of mRNA_P-wetherbeei_contig11350.1.1 vs. uniprot
Match: A0A6H5KBX5_9PHAE (DNA-(apurinic or apyrimidinic site) endonuclease n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KBX5_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 2.220e-17 Identity = 48/108 (44.44%), Postives = 64/108 (59.26%), Query Frame = 1 Query: 1 PRTIIAWNANGLTSRLTGEPTAFLEFMREHEPDVLCIQEVRLPAHGPPKSTRGDGAPRNRGTVKAGTKTERADSDLLTRYLNRLS---DYEPVFSLADTKYAGTAMLI 315 PRTI+ +N NG + RL F+ EH+PD++C QEVRLPA G PK+ + D R R +K T +R D L+ R L L+ Y V SLA++KYAGTA L+ Sbjct: 68 PRTIVTFNLNGASPRLAKNWNEIKGFLEEHKPDLVCFQEVRLPAKGVPKAKKEDDTGRKRWQLKDDTAADRKDVALVDRTLRALARRLGYRLVMSLANSKYAGTAALV 175 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11350.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig11350.1.1 >prot_P-wetherbeei_contig11350.1.1 ID=prot_P-wetherbeei_contig11350.1.1|Name=mRNA_P-wetherbeei_contig11350.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=125bp PRTIIAWNANGLTSRLTGEPTAFLEFMREHEPDVLCIQEVRLPAHGPPKSback to top mRNA from alignment at P-wetherbeei_contig11350:1170..1771+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig11350.1.1 ID=mRNA_P-wetherbeei_contig11350.1.1|Name=mRNA_P-wetherbeei_contig11350.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=602bp|location=Sequence derived from alignment at P-wetherbeei_contig11350:1170..1771+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig11350:1170..1771+ >mRNA_P-wetherbeei_contig11350.1.1 ID=mRNA_P-wetherbeei_contig11350.1.1|Name=mRNA_P-wetherbeei_contig11350.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=375bp|location=Sequence derived from alignment at P-wetherbeei_contig11350:1170..1771+ (Phaeothamnion wetherbeei SAG_119_79)back to top |