mRNA_P-wetherbeei_contig11350.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11350.1.1
Unique NamemRNA_P-wetherbeei_contig11350.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11350.1.1 vs. uniprot
Match: A0A812K9S6_9DINO (DNA-(apurinic or apyrimidinic site) endonuclease n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A812K9S6_9DINO)

HSP 1 Score: 94.7 bits (234), Expect = 2.090e-20
Identity = 52/111 (46.85%), Postives = 67/111 (60.36%), Query Frame = 1
Query:    1 PRTIIAWNANGLTSRLTGEPTAFLEFMREHEPDVLCIQEVRLPAHGPPKSTRGDGAPRNRGTVKAGTKTERADSDLLTRYL--NRLSDYEPVFSLADTKYAGTAMLISRRM 327
            P+ II+WN NGL  +L    +   +F+   EPDVLC+QEVRLPA GP    RGDG  R+RG  K  +  E+AD DL+ R L       Y   +SLAD KY+GT M+I R +
Sbjct:   47 PQKIISWNVNGLAVQLRNNWSLIKQFLENEEPDVLCLQEVRLPAAGPKGCKRGDGQKRSRGEAKYDSAQEKADWDLVQRTLVATYAKTYSFHWSLADWKYSGTLMMIRRSL 157          
BLAST of mRNA_P-wetherbeei_contig11350.1.1 vs. uniprot
Match: A0A812Y8A6_SYMMI (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Y8A6_SYMMI)

HSP 1 Score: 95.1 bits (235), Expect = 2.860e-20
Identity = 53/111 (47.75%), Postives = 68/111 (61.26%), Query Frame = 1
Query:    1 PRTIIAWNANGLTSRLTGEPTAFLEFMREHEPDVLCIQEVRLPAHGPPKSTRGDGAPRNRGTVKAGTKTERADSDLLTRYL--NRLSDYEPVFSLADTKYAGTAMLISRRM 327
            P+ II+WNANGL  +L    +   +F+   +PDVLC+QEVRLPA GP    RGDG  R+RG  K  +  E+AD DL+ R L       Y   +SLAD KYAGT M+I R +
Sbjct:   46 PQKIISWNANGLAVQLRNNWSLIKQFLENEDPDVLCLQEVRLPAAGPKGCKRGDGQKRSRGEAKYDSAQEKADWDLVQRTLVATFAKMYSFHWSLADWKYAGTLMMIRRSL 156          
BLAST of mRNA_P-wetherbeei_contig11350.1.1 vs. uniprot
Match: A0A813A5S0_9DINO (APE1L protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813A5S0_9DINO)

HSP 1 Score: 95.1 bits (235), Expect = 2.960e-20
Identity = 53/111 (47.75%), Postives = 68/111 (61.26%), Query Frame = 1
Query:    1 PRTIIAWNANGLTSRLTGEPTAFLEFMREHEPDVLCIQEVRLPAHGPPKSTRGDGAPRNRGTVKAGTKTERADSDLLTRYL--NRLSDYEPVFSLADTKYAGTAMLISRRM 327
            P+ II+WNANGL  +L    +   +F+   +PDVLC+QEVRLPA GP    RGDG  R+RG  K  +  E+AD DL+ R L       Y   +SLAD KYAGT M+I R +
Sbjct:   46 PQKIISWNANGLAVQLRNNWSLIKQFLENEDPDVLCLQEVRLPAAGPKGCKRGDGQKRSRGEAKYDSAQEKADWDLVQRTLVATFAKMYSFHWSLADWKYAGTLMMIRRSL 156          
BLAST of mRNA_P-wetherbeei_contig11350.1.1 vs. uniprot
Match: A0A812P0L7_9DINO (APE1L protein n=2 Tax=unclassified Symbiodinium TaxID=279888 RepID=A0A812P0L7_9DINO)

HSP 1 Score: 94.0 bits (232), Expect = 7.500e-20
Identity = 52/111 (46.85%), Postives = 67/111 (60.36%), Query Frame = 1
Query:    1 PRTIIAWNANGLTSRLTGEPTAFLEFMREHEPDVLCIQEVRLPAHGPPKSTRGDGAPRNRGTVKAGTKTERADSDLLTRYL--NRLSDYEPVFSLADTKYAGTAMLISRRM 327
            P+ II+WN NGL  +L    +   +F+   EPDVLC+QEVRLPA GP    RGDG  R+RG  K  +  E+AD DL+ R L       Y   +SLAD KY+GT M+I R +
Sbjct:   47 PQKIISWNVNGLAVQLRNNWSLIKQFLETEEPDVLCLQEVRLPAAGPKGCKRGDGQKRSRGEAKCDSAQEKADWDLVQRTLVATFAKMYSFHWSLADWKYSGTLMMIRRSL 157          
BLAST of mRNA_P-wetherbeei_contig11350.1.1 vs. uniprot
Match: A0A7S1X753_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X753_9CHLO)

HSP 1 Score: 90.9 bits (224), Expect = 9.690e-20
Identity = 50/111 (45.05%), Postives = 72/111 (64.86%), Query Frame = 1
Query:    1 PRTIIAWNANGLTSRL-TGEPTAFLEFMR-EHEPDVLCIQEVRLPAHGPPKSTRGDGAPRNRGTVKAGTKTERADSDLLTRYLN--RLSDYEPVFSLADTKYAGTAMLISR 321
            PRT++ WN NGLT R  + +  A L+ M   ++PDV+ IQEVR+PA  P  + +GDG PR+R      T T R D+D++ + L    L++YE  +SLAD KYAG+A+L+ R
Sbjct:   45 PRTLMTWNCNGLTCRAQSAQQVAELQAMLWANQPDVVAIQEVRMPASAPKGAKKGDGQPRSRTVPNTNTPTGRKDADMVGKLLRSKELANYEVFYSLADWKYAGSALLVRR 155          
BLAST of mRNA_P-wetherbeei_contig11350.1.1 vs. uniprot
Match: A0A0E0EJE7_9ORYZ (Uncharacterized protein n=1 Tax=Oryza meridionalis TaxID=40149 RepID=A0A0E0EJE7_9ORYZ)

HSP 1 Score: 88.6 bits (218), Expect = 2.450e-19
Identity = 49/127 (38.58%), Postives = 75/127 (59.06%), Query Frame = 1
Query:    1 PRTIIAWNANGLTSRLTGEPTAFLEFMREHEPDVLCIQEVRLPAHGPPKSTRGDGAPRNRGTVKAGTKTERADSDLLTRYLNR--LSDYEPVFSLADTKYAGTAMLISRRMGGRRALKGLRFSLDWT 375
            PR  + WNAN L  R+  +  AF +F+   +PDV+C+QEVR+PA G        GAP+N G +K  T + R +  ++ R L+     DY   +SL+D+KYAGTAM+I ++   ++    + F+LD T
Sbjct:   56 PRRFVTWNANSLLLRMKSDWPAFCQFVSRVDPDVICVQEVRMPAAG------SKGAPKNPGQLKDDTSSSRDEKQVVLRALSSPPFKDYRVWWSLSDSKYAGTAMIIKKKFEPKK----VSFNLDRT 172          
BLAST of mRNA_P-wetherbeei_contig11350.1.1 vs. uniprot
Match: Q2QTX4_ORYSJ (DNA-(apurinic or apyrimidinic site) endonuclease n=5 Tax=Oryza TaxID=4527 RepID=Q2QTX4_ORYSJ)

HSP 1 Score: 88.6 bits (218), Expect = 2.920e-18
Identity = 49/127 (38.58%), Postives = 75/127 (59.06%), Query Frame = 1
Query:    1 PRTIIAWNANGLTSRLTGEPTAFLEFMREHEPDVLCIQEVRLPAHGPPKSTRGDGAPRNRGTVKAGTKTERADSDLLTRYLNR--LSDYEPVFSLADTKYAGTAMLISRRMGGRRALKGLRFSLDWT 375
            PR  + WNAN L  R+  +  AF +F+   +PDV+C+QEVR+PA G        GAP+N G +K  T + R +  ++ R L+     DY   +SL+D+KYAGTAM+I ++   ++    + F+LD T
Sbjct:   59 PRRFVTWNANSLLLRMKSDWPAFCQFVSRVDPDVICVQEVRMPAAG------SKGAPKNPGQLKDDTSSSRDEKQVVLRALSSPPFKDYRVWWSLSDSKYAGTAMIIKKKFEPKK----VSFNLDRT 175          
BLAST of mRNA_P-wetherbeei_contig11350.1.1 vs. uniprot
Match: A0A0D9XYH2_9ORYZ (DNA-(apurinic or apyrimidinic site) endonuclease n=9 Tax=Oryzinae TaxID=1648021 RepID=A0A0D9XYH2_9ORYZ)

HSP 1 Score: 86.7 bits (213), Expect = 1.270e-17
Identity = 48/127 (37.80%), Postives = 74/127 (58.27%), Query Frame = 1
Query:    1 PRTIIAWNANGLTSRLTGEPTAFLEFMREHEPDVLCIQEVRLPAHGPPKSTRGDGAPRNRGTVKAGTKTERADSDLLTRYLNR--LSDYEPVFSLADTKYAGTAMLISRRMGGRRALKGLRFSLDWT 375
            PR  + WNAN L  R+  +  AF +F+   +PDV+C+QEVR+PA G        GAP+N   +K  T + R +  ++ R L+     DY   +SL+D+KYAGTAM+I ++   ++    + F+LD T
Sbjct:   40 PRRFVTWNANSLLLRMKSDWPAFCQFVSRVDPDVICVQEVRIPAAG------SKGAPKNPSELKDDTSSSREEKQVVLRALSSPPFKDYRVWWSLSDSKYAGTAMIIKKKFEPKK----VSFNLDRT 156          
BLAST of mRNA_P-wetherbeei_contig11350.1.1 vs. uniprot
Match: A0A7S0JI33_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JI33_9EUKA)

HSP 1 Score: 84.7 bits (208), Expect = 1.990e-17
Identity = 43/120 (35.83%), Postives = 71/120 (59.17%), Query Frame = 1
Query:   10 IIAWNANGLTSRLTGEPTAFLEFMREHEPDVLCIQEVRLPAHGPPKSTRGDGAPRNRGTVKAGTKTERADSDLLTRYLNRLSDYEPVFSLADTKYAGTAMLISRRMGGRRALKGLRFSLD 369
            + AWNAN L +R+  + +A   F+    PD++ + EVR+PA GPP   + D  PR RG +   +  +  ++D +  +L R  +Y   ++L+D+KYAGTA+L+ RR   +     LR++LD
Sbjct:   67 LCAWNANSLLNRIEKDQSALSAFLTTESPDLILVSEVRMPAAGPPACKKDDKQPRRRGEMSKASAAQSREADAIASFL-RAHNYRAYYTLSDSKYAGTALLV-RRDRAQPDAATLRYTLD 184          
BLAST of mRNA_P-wetherbeei_contig11350.1.1 vs. uniprot
Match: A0A6H5KBX5_9PHAE (DNA-(apurinic or apyrimidinic site) endonuclease n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KBX5_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 2.220e-17
Identity = 48/108 (44.44%), Postives = 64/108 (59.26%), Query Frame = 1
Query:    1 PRTIIAWNANGLTSRLTGEPTAFLEFMREHEPDVLCIQEVRLPAHGPPKSTRGDGAPRNRGTVKAGTKTERADSDLLTRYLNRLS---DYEPVFSLADTKYAGTAMLI 315
            PRTI+ +N NG + RL         F+ EH+PD++C QEVRLPA G PK+ + D   R R  +K  T  +R D  L+ R L  L+    Y  V SLA++KYAGTA L+
Sbjct:   68 PRTIVTFNLNGASPRLAKNWNEIKGFLEEHKPDLVCFQEVRLPAKGVPKAKKEDDTGRKRWQLKDDTAADRKDVALVDRTLRALARRLGYRLVMSLANSKYAGTAALV 175          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11350.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812K9S6_9DINO2.090e-2046.85DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A812Y8A6_SYMMI2.860e-2047.75DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A813A5S0_9DINO2.960e-2047.75APE1L protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A812P0L7_9DINO7.500e-2046.85APE1L protein n=2 Tax=unclassified Symbiodinium Ta... [more]
A0A7S1X753_9CHLO9.690e-2045.05Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A0E0EJE7_9ORYZ2.450e-1938.58Uncharacterized protein n=1 Tax=Oryza meridionalis... [more]
Q2QTX4_ORYSJ2.920e-1838.58DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A0D9XYH2_9ORYZ1.270e-1737.80DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A7S0JI33_9EUKA1.990e-1735.83Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A6H5KBX5_9PHAE2.220e-1744.44DNA-(apurinic or apyrimidinic site) endonuclease n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11350contigP-wetherbeei_contig11350:1170..1771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog40148.OGLUM12G09870.1
PFAMsExo_endo_phos
Model size375
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.83e-19
EggNOG OGsCOG0708@1|root,KOG1294@2759|Eukaryota,37HWF@33090|Viridiplantae,3GDGK@35493|Streptophyta,3KX33@4447|Liliopsida,3I39T@38820|Poales
DescriptionDNA-(Apurinic or apyrimidinic site) lyase
Cds size375
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185907.9871252-CDS-P-wetherbeei_contig11350:1169..12711683185907.9871252-CDS-P-wetherbeei_contig11350:1169..1271Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11350 1170..1271 +
1683185907.9977238-CDS-P-wetherbeei_contig11350:1498..17711683185907.9977238-CDS-P-wetherbeei_contig11350:1498..1771Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11350 1499..1771 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11350.1.1prot_P-wetherbeei_contig11350.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11350 1170..1771 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11350.1.1

>prot_P-wetherbeei_contig11350.1.1 ID=prot_P-wetherbeei_contig11350.1.1|Name=mRNA_P-wetherbeei_contig11350.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=125bp
PRTIIAWNANGLTSRLTGEPTAFLEFMREHEPDVLCIQEVRLPAHGPPKS
TRGDGAPRNRGTVKAGTKTERADSDLLTRYLNRLSDYEPVFSLADTKYAG
TAMLISRRMGGRRALKGLRFSLDWT
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mRNA from alignment at P-wetherbeei_contig11350:1170..1771+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11350.1.1 ID=mRNA_P-wetherbeei_contig11350.1.1|Name=mRNA_P-wetherbeei_contig11350.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=602bp|location=Sequence derived from alignment at P-wetherbeei_contig11350:1170..1771+ (Phaeothamnion wetherbeei SAG_119_79)
CCAAGGACGATTATCGCCTGGAATGCAAACGGACTAACCTCGAGACTAAC GGGGGAGCCCACTGCCTTCCTCGAATTCATGCGAGAGCACGAGCCTGATG TGGTGCGATTCTCTTCTTTTCCTTCCTCTTTCTTTTCTTGTTTTGCTCTT CCCAAGCGTGGAAGACGATGCTCCTTGTCGTGGAAGGAATCTTACTTTCG CCTTGTCTTGACCACGGGGGGAGGAAAAATTATCGAAAGTCTCAGACGGT CCTTCTCACATCCGCGCACTTCGTTTTCCTTCTTCTCTTCGCTGCTTCCT GCGCTGCACCCATTCTACTCCGCCACCAGCTCTGCATCCAGGAGGTGCGC CTCCCGGCCCACGGACCCCCCAAGAGCACCAGAGGCGATGGTGCACCGCG CAACCGTGGCACTGTCAAGGCGGGCACCAAGACCGAGCGCGCCGACAGCG ACCTGCTGACACGATACCTGAACAGGCTCAGTGACTACGAGCCCGTCTTC TCGCTGGCAGACACCAAGTATGCGGGGACGGCCATGCTGATCAGCCGGCG GATGGGCGGGCGGCGGGCGCTGAAGGGCCTGCGCTTCTCGCTCGACTGGA CT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11350:1170..1771+

>mRNA_P-wetherbeei_contig11350.1.1 ID=mRNA_P-wetherbeei_contig11350.1.1|Name=mRNA_P-wetherbeei_contig11350.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=375bp|location=Sequence derived from alignment at P-wetherbeei_contig11350:1170..1771+ (Phaeothamnion wetherbeei SAG_119_79)
CCAAGGACGATTATCGCCTGGAATGCAAACGGACTAACCTCGAGACTAAC
GGGGGAGCCCACTGCCTTCCTCGAATTCATGCGAGAGCACGAGCCTGATG
TGCTCTGCATCCAGGAGGTGCGCCTCCCGGCCCACGGACCCCCCAAGAGC
ACCAGAGGCGATGGTGCACCGCGCAACCGTGGCACTGTCAAGGCGGGCAC
CAAGACCGAGCGCGCCGACAGCGACCTGCTGACACGATACCTGAACAGGC
TCAGTGACTACGAGCCCGTCTTCTCGCTGGCAGACACCAAGTATGCGGGG
ACGGCCATGCTGATCAGCCGGCGGATGGGCGGGCGGCGGGCGCTGAAGGG
CCTGCGCTTCTCGCTCGACTGGACT
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