mRNA_P-wetherbeei_contig1135.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1135.4.1
Unique NamemRNA_P-wetherbeei_contig1135.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1135.4.1 vs. uniprot
Match: A0A2V3IDA5_9FLOR (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IDA5_9FLOR)

HSP 1 Score: 92.4 bits (228), Expect = 1.820e-19
Identity = 52/121 (42.98%), Postives = 73/121 (60.33%), Query Frame = 1
Query:    1 DALDDAAARVAAEIEAYKKVKRTVQQVPPCGGAELIFWKSLATEFPILSQVARVVYAHPTSAAAIERDFSDAGNLISNRRGRLGSAYVDMILFLHANFDLIPVTIPAISAKELAGRIPLRL 363
            ++L  A   V AEI +Y   +R +          L +W++  +++P LS VAR V  HP S+A I+RDF  AG+ +S+RR R  SA+VDM+LFLH N DLIP  +P +S  E   +IP RL
Sbjct:  212 ESLSTAEESVRAEINSYLDHERALPGDVTSRNL-LNWWRTKGSKYPSLSVVARAVLGHPVSSARIDRDFGTAGSFLSSRRTRHDSAFVDMLLFLHCNLDLIPSDVPEMSNPEWKSQIPARL 331          
BLAST of mRNA_P-wetherbeei_contig1135.4.1 vs. uniprot
Match: A0A2V3IUX2_9FLOR (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUX2_9FLOR)

HSP 1 Score: 83.6 bits (205), Expect = 9.310e-18
Identity = 39/88 (44.32%), Postives = 61/88 (69.32%), Query Frame = 1
Query:  103 LIFWKSLATEFPILSQVARVVYAHPTSAAAIERDFSDAGNLISNRRGRLGSAYVDMILFLHANFDLIPVTIPAISAKELAGRIPLRLT 366
            L++W+S    +P LSQV + V   P S+A  ERDF  AG+L+S++R ++ SA+VD+ LFL+ N ++I ++IP I+AK    +IP R+T
Sbjct:   24 LMWWRSRECRYPYLSQVVKAVLGSPASSAQTERDFGVAGSLLSSKRNKIDSAFVDISLFLNCNSEIIQMSIPEITAKNWQEKIPARMT 111          
BLAST of mRNA_P-wetherbeei_contig1135.4.1 vs. uniprot
Match: A0A6H5L5L6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L6_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.790e-17
Identity = 42/103 (40.78%), Postives = 63/103 (61.17%), Query Frame = 1
Query:   43 EAYKKVKRTVQQVPPCGGAELIFWKSLATEFPILSQVARVVYAHPTSAAAIERDFSDAGNLISNRRGRLGSAYVDMILFLHANFDLIPVTIPAISAKELAGRI 351
            ++Y   KRT+ ++  C    L +WK   + +P+L++ ARVV+  P SAA +E DF DAG ++++ R    + YV+MILFLH N DLIP  IPA      + R+
Sbjct:   20 QSYALQKRTIDELS-CDSV-LKWWKRWMSSYPLLARAARVVFGAPASAAVLEGDFGDAGRIMTSSRSTTDAKYVEMILFLHGNLDLIPEDIPACQPTAPSARL 120          
BLAST of mRNA_P-wetherbeei_contig1135.4.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 2.390e-16
Identity = 41/87 (47.13%), Postives = 59/87 (67.82%), Query Frame = 1
Query:  103 LIFWKSLATEFPILSQVARVVYAHPTSAAAIERDFSDAGNLISNRRGRLGSAYVDMILFLHANFDLIPVTIPAISAKELAGRIPLRL 363
            L +WK  A  +P+L++VARVV+  P SAA +ERDFS+AG ++++ R  + S YV+MI+FLH N DLIP  I  ++      +IP RL
Sbjct:  608 LKWWKMWAHAYPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGNLDLIPEDITKLTEAAARTKIPGRL 694          
BLAST of mRNA_P-wetherbeei_contig1135.4.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 5.990e-16
Identity = 47/126 (37.30%), Postives = 75/126 (59.52%), Query Frame = 1
Query:   34 AEIEAYKKVKR-TVQQVPPCGGAELIFWKSLATEFPILSQVARVVYAHPTSAAAIERDFSDAGNLISNRRGRLGSAYVDMILFLHANFDLIPVTIPAISAKELAGRIPLRLTGRRTRVRGAEDSSG 408
            AE+E  + V+  T+     C G  L +WK     +P+L++ ARVV+  P SAA +ERDF+DA  ++++ R    + YV+M+LFLH N DLIP  IP +  +++  +IP RL+     + G + + G
Sbjct:  525 AELETLRGVEAGTLTDDLSCEGV-LEWWKKWGRLYPLLARAARVVFGAPASAAVLERDFTDAWCMMASSRSAGDAKYVEMVLFLHGNLDLIPEQIPELRDEDVQAKIPGRLSNPIPELHGLDGTLG 649          
BLAST of mRNA_P-wetherbeei_contig1135.4.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 7.980e-15
Identity = 39/78 (50.00%), Postives = 54/78 (69.23%), Query Frame = 1
Query:  133 FPILSQVARVVYAHPTSAAAIERDFSDAGNLI-SNRRGRLGSAYVDMILFLHANFDLIPVTIPAISAKELAGRIPLRL 363
            +P+L++VARVV+  P SAA +ERDFS+AG ++ S+RR    + YV+MILFLH N DLIP  I  ++      +IP RL
Sbjct:    6 YPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGNLDLIPEDITKLTEAVARSKIPGRL 83          
BLAST of mRNA_P-wetherbeei_contig1135.4.1 vs. uniprot
Match: A0A6H5KSA7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSA7_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 4.030e-14
Identity = 45/127 (35.43%), Postives = 74/127 (58.27%), Query Frame = 1
Query:   28 VAAEIEAYKKVKRTVQQVPPCGGAELI-FWKSLATE-FPILSQVARVVYAHPTSAAAIERDFSDAGNLISNRRGRLGSAYVDMILFLHANFDLIP--VTIPAISAKELAGRIPLRLTGRRTRVRGAE 396
            V+ EIE Y  +  T +++      E++ +W+    + FP L+ VA+ V+ +   AA +ERDFS   NL++  R R+ + +V+M++FLHANF+ IP    IP I+AK++   +P R  G    +  AE
Sbjct:    8 VSQEIERYHSLYITAEELDT---REILPWWRQTGRKTFPYLAPVAQQVFGNQAGAAQVERDFSGCANLLTRNRSRMDTYWVEMVMFLHANFEHIPGFKDIPMIAAKDIHTCLPPRFNGGDADLAAAE 131          
BLAST of mRNA_P-wetherbeei_contig1135.4.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 5.810e-14
Identity = 40/87 (45.98%), Postives = 56/87 (64.37%), Query Frame = 1
Query:  103 LIFWKSLATEFPILSQVARVVYAHPTSAAAIERDFSDAGNLISNRRGRLGSAYVDMILFLHANFDLIPVTIPAISAKELAGRIPLRL 363
            L +WK  A  +P+L++VARVV     SAA +E DFS+AG ++++ R  + S YV+MILFLH N DLIP  I  ++      +IP RL
Sbjct:  381 LKWWKMWAHAYPLLARVARVVIGALASAAVLEHDFSNAGRMMTSSRSTMDSKYVEMILFLHGNLDLIPEDITKLTEAVARTKIPGRL 467          
BLAST of mRNA_P-wetherbeei_contig1135.4.1 vs. uniprot
Match: A0A6H5JML0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JML0_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 5.610e-13
Identity = 37/87 (42.53%), Postives = 55/87 (63.22%), Query Frame = 1
Query:  103 LIFWKSLATEFPILSQVARVVYAHPTSAAAIERDFSDAGNLISNRRGRLGSAYVDMILFLHANFDLIPVTIPAISAKELAGRIPLRL 363
            L +WK  A  +P+L++VARVV+  P SAA +E  FS+AG + ++ R  + S YV+MI+FLH N +LIP  I  ++      + P RL
Sbjct:  144 LKWWKMWAHAYPLLARVARVVFGAPASAAVLECYFSNAGRMTTSSRSTMDSTYVEMIMFLHGNLNLIPEDITKLTEVVARTKFPGRL 230          
BLAST of mRNA_P-wetherbeei_contig1135.4.1 vs. uniprot
Match: D8LFP4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP4_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 1.910e-12
Identity = 40/96 (41.67%), Postives = 58/96 (60.42%), Query Frame = 1
Query:   88 CGGAELIFWKSLATEFPILSQVARVVYAHPTSAAAIERDFSDAGNLISNRRGRLGSAYVDMILFLHANFDLIPVTIPAISAKELAG---RIPLRLT 366
            C G  L +WK     +P+L++VARVV+A P S    ERD   AG ++++ R    + YV+M+LFLH N DL+P  IP + A  + G   +IP RL+
Sbjct:  646 CEGV-LNWWKRKEHSYPLLARVARVVFAAPASVMVQERDLGSAGRMMTSSRSTGDAKYVEMVLFLHGNVDLLPEIIPELPADGVNGVQTKIPGRLS 740          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1135.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IDA5_9FLOR1.820e-1942.98Dimer_Tnp_hAT domain-containing protein n=1 Tax=Gr... [more]
A0A2V3IUX2_9FLOR9.310e-1844.32Dimer_Tnp_hAT domain-containing protein n=1 Tax=Gr... [more]
A0A6H5L5L6_9PHAE1.790e-1740.78Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZ82_9PHAE2.390e-1647.13Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LBK4_ECTSI5.990e-1637.30Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KCJ3_9PHAE7.980e-1550.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KSA7_9PHAE4.030e-1435.43Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JNY1_9PHAE5.810e-1445.98Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JML0_9PHAE5.610e-1342.53Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LFP4_ECTSI1.910e-1241.67Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1135contigP-wetherbeei_contig1135:5703..6134 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog7029.ACYPI55893-PA
PFAMsDBD_Tnp_Hermes,Dimer_Tnp_hAT
Model size432
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.46e-08
EggNOG OGsKOG1121@1|root,KOG1121@2759|Eukaryota,3A4I2@33154|Opisthokonta,3BRWZ@33208|Metazoa,3D90A@33213|Bilateria,423YP@6656|Arthropoda
Descriptionprotein dimerization activity
Cds size432
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185907.9596505-CDS-P-wetherbeei_contig1135:5702..61341683185907.9596505-CDS-P-wetherbeei_contig1135:5702..6134Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1135 5703..6134 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1135.4.1prot_P-wetherbeei_contig1135.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1135 5703..6134 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1135.4.1

>prot_P-wetherbeei_contig1135.4.1 ID=prot_P-wetherbeei_contig1135.4.1|Name=mRNA_P-wetherbeei_contig1135.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=144bp
DALDDAAARVAAEIEAYKKVKRTVQQVPPCGGAELIFWKSLATEFPILSQ
VARVVYAHPTSAAAIERDFSDAGNLISNRRGRLGSAYVDMILFLHANFDL
IPVTIPAISAKELAGRIPLRLTGRRTRVRGAEDSSGGMSSSEDL
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mRNA from alignment at P-wetherbeei_contig1135:5703..6134-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1135.4.1 ID=mRNA_P-wetherbeei_contig1135.4.1|Name=mRNA_P-wetherbeei_contig1135.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=432bp|location=Sequence derived from alignment at P-wetherbeei_contig1135:5703..6134- (Phaeothamnion wetherbeei SAG_119_79)
GATGCGCTGGACGACGCGGCCGCCAGGGTGGCAGCCGAGATCGAGGCGTA CAAGAAAGTGAAGCGGACGGTTCAGCAGGTTCCACCTTGCGGTGGGGCAG AGCTGATATTTTGGAAATCGTTGGCCACGGAGTTTCCGATCCTTTCTCAA GTGGCACGCGTTGTGTACGCACATCCGACGTCGGCTGCGGCAATCGAGAG GGATTTTAGCGACGCTGGCAATCTCATTTCGAATCGGCGGGGGAGGTTGG GGTCGGCGTACGTGGACATGATTCTCTTTCTCCATGCTAACTTTGACTTG ATTCCAGTGACCATTCCGGCTATCTCGGCAAAGGAGTTAGCCGGGCGCAT TCCTTTGCGCCTGACGGGCAGGCGGACCCGAGTTAGAGGAGCGGAGGACA GCAGCGGAGGAATGTCCTCGTCCGAGGATTTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1135:5703..6134-

>mRNA_P-wetherbeei_contig1135.4.1 ID=mRNA_P-wetherbeei_contig1135.4.1|Name=mRNA_P-wetherbeei_contig1135.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=432bp|location=Sequence derived from alignment at P-wetherbeei_contig1135:5703..6134- (Phaeothamnion wetherbeei SAG_119_79)
GATGCGCTGGACGACGCGGCCGCCAGGGTGGCAGCCGAGATCGAGGCGTA
CAAGAAAGTGAAGCGGACGGTTCAGCAGGTTCCACCTTGCGGTGGGGCAG
AGCTGATATTTTGGAAATCGTTGGCCACGGAGTTTCCGATCCTTTCTCAA
GTGGCACGCGTTGTGTACGCACATCCGACGTCGGCTGCGGCAATCGAGAG
GGATTTTAGCGACGCTGGCAATCTCATTTCGAATCGGCGGGGGAGGTTGG
GGTCGGCGTACGTGGACATGATTCTCTTTCTCCATGCTAACTTTGACTTG
ATTCCAGTGACCATTCCGGCTATCTCGGCAAAGGAGTTAGCCGGGCGCAT
TCCTTTGCGCCTGACGGGCAGGCGGACCCGAGTTAGAGGAGCGGAGGACA
GCAGCGGAGGAATGTCCTCGTCCGAGGATTTG
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