mRNA_P-wetherbeei_contig1135.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig1135.1.1 vs. uniprot
Match: A0A1Y1HYQ8_KLENI (RNA-binding protein Nova-1 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HYQ8_KLENI) HSP 1 Score: 144 bits (363), Expect = 8.780e-34 Identity = 108/337 (32.05%), Postives = 159/337 (47.18%), Query Frame = 3 Query: 732 SAFKLMLNSSQAGNVIGKGGQSIKELQASTHATVRVSSNGATFPGTGDRVCLVSGSIESVLDACGRILHSIHTDDRAGXXXXXXXXXXXXXXXDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGSPEVVQRVLVPAPAAGSIIGRGGAVIKEMNLSSGARVSMGSKELVV--ANERTMTITGPLICVQSAVILLVRKLAEGPTPVLYTNMT---PLYSAADVPGGTIPT-------AQG--------LPTDVLAQALS----GPPTTTMQVGIPDNLVGAVVGRGGAKIGELRTRSGAAINISGRDDFMPGTRNRILTISGTPLATQAAHYLLGQ 1670 S+ + +++++ AG++IGKGG +I E Q + A +++S N FPGT DR+ L+SG+I ++L A IL I T++ G +++VP G IIG+GGA I+ S A + + ++ V +R +TITG L AV L++ K+ E P +LY+NM +Y+ +P G +P QG LP +AQ GPPT + V +PD VGA+VGRGG I E++ +G I IS R DF+ GT NR +TI+G TQ A YLL Q Sbjct: 98 SSVRFLISNASAGSIIGKGGSTISEFQLQSGARIQLSRNREFFPGTTDRIILLSGTINAILTALHLILSKIMTEEAGGGDISQKTSQV--------------------------------------------KLIVPNAVCGGIIGKGGATIRAYVEDSAANIKLSGQDQAVPGVTDRIVTITGKLEQQMRAVALILAKMTEDPNYMLYSNMPLSYSVYTPVGMPHGPMPLHGFPMGPGQGMPFQQHPILPPQHMAQLAGMIPGGPPTHAITVAVPDEHVGAIVGRGGRTITEIQQMAGVRIKISDRGDFVMGTTNRKITITGPLEGTQIAQYLLSQ 390
BLAST of mRNA_P-wetherbeei_contig1135.1.1 vs. uniprot
Match: L8IMA2_9CETA (RNA-binding protein Nova-2 (Fragment) n=3 Tax=Laurasiatheria TaxID=314145 RepID=L8IMA2_9CETA) HSP 1 Score: 140 bits (353), Expect = 1.960e-33 Identity = 103/312 (33.01%), Postives = 158/312 (50.64%), Query Frame = 3 Query: 741 KLMLNSSQAGNVIGKGGQSIKELQASTHATVRVSSNGATFPGTGDRVCLVSGSIESVLDACGRILHSIHTDDRAGXXXXXXXXXXXXXXXDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGSPEVVQRVLVPAPAAGSIIGRGGAVIKEMNLSSGARVSMGSK-ELVVANERTMTITGPLICVQSAVILLVRKLAEGPTPVLYTNMTPLYSAADVPGGTIPTAQGLPTDVLAQALSGPPTTTM-QVGIPDNLVGAVVGRGGAKIGELRTRSGAAINISGRDDFMPGTRNRILTISGTPLATQAAHYLLGQ 1670 K+++ S AG++IGKGGQ+I +LQ T AT+++S + +PGT +RVCLV G+ E++ I + +A N +++VP AG IIG+GGA +K + SGA V + K E + ER +T++G V AV +V+K+ E P N+ S A+V G P A PT + A+ L+ + ++ +P+NLVGA++G+GG + E + +GA I IS + +F+PGTRNR +TI+G+P ATQAA YL+ Q Sbjct: 8 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVREIPQA-------------------------------MTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQKVQEDPQSSSCLNI----SYANVAG---PVANSNPTGLTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQ 281
BLAST of mRNA_P-wetherbeei_contig1135.1.1 vs. uniprot
Match: A0A836CIW2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIW2_9STRA) HSP 1 Score: 142 bits (358), Expect = 2.330e-33 Identity = 109/357 (30.53%), Postives = 165/357 (46.22%), Query Frame = 3 Query: 726 PTSAFKLMLNSSQAGNVIGKGGQSIKELQASTHATVRVSSNGATFPGTGDRVCLVSGSIESVLDACGRILHSIHTDDRAGXXXXXXXXXXXXXXXDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGSPEVVQRVLVPAPAAGSIIGRGGAVIKEMNLSSGARVSMGSKELVVANERTMTITGPLICVQSAVILLVRKLAEGPTPVLYTNMTPLYS--------------------AADVPGGTI-----------------------PTAQGLPTDVLAQALSGPPT-TTMQVGIPDNLVGAVVGRGGAKIGELRTRSGAAINISGRDDFMPGTRNRILTISGTPLATQAAHYLL 1664 P A KL+++++ AG++IGK GQ+I+ +Q + A V+VS++G PGT DRV LV+G + V AC +LH++H R + EV QR+L+PA A G +IGRGG+ IK ++ SSGARVS+ K+ ++ER +TI G L + + +L+ L P +YTN++ Y+ +A+ G ++ P PT +A A++G TT+ V IPDN+ + SGA IN+S R DF+PGT NR +TI+G+P A QAA +L+ Sbjct: 46 PPCALKLLVSNNMAGSLIGKAGQTIQNVQLQSGAVVKVSTSGMYLPGTQDRVVLVTGDLPRVKAACALVLHTVHEQGR---------------------------------DRDCGVPAPLDIGTERDALEVTQRLLIPASAGGLVIGRGGSNIKGLSESSGARVSLSQKQTSPSSERVVTIGGSLGACRLCIDMLLDTLKREPAAAVYTNLSVNYAHPPAGAAAAXXXXXXXXXTGSAEATGISVDRHARQPLPPLPTYPPEMLDLIQPLNMPAPTHPVAAAVAGAAAVTTITVSIPDNM----------------STSGARINVSQRGDFIPGTSNRTVTITGSPAAAQAAQFLI 353
BLAST of mRNA_P-wetherbeei_contig1135.1.1 vs. uniprot
Match: UPI0006D8E78A (RNA-binding protein Nova-2 n=1 Tax=Bos mutus TaxID=72004 RepID=UPI0006D8E78A) HSP 1 Score: 138 bits (347), Expect = 3.150e-32 Identity = 101/311 (32.48%), Postives = 155/311 (49.84%), Query Frame = 3 Query: 741 KLMLNSSQAGNVIGKGGQSIKELQASTHATVRVSSNGATFPGTGDRVCLVSGSIESVLDACGRILHSIHTDDRAGXXXXXXXXXXXXXXXDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGSPEVVQRVLVPAPAAGSIIGRGGAVIKEMNLSSGARVSMGSK-ELVVANERTMTITGPLICVQSAVILLVRKLAEGPTPVLYTNMTPLYSAADVPGGTIPTAQGLPTDVLAQALSGPPTTTMQVGIPDNLVGAVVGRGGAKIGELRTRSGAAINISGRDDFMPGTRNRILTISGTPLATQAAHYLLGQ 1670 K+++ S AG++IGKGGQ+I +LQ T AT+++S + +PGT +RVCLV G+ E++ I + +A N +++VP AG IIG+GGA +K + SGA V + K E + ER +T++G V AV +V+K+ E P N+ S A+V G P A PT + + +++ +P+NLVGA++G+GG + E + +GA I IS + +F+PGTRNR +TI+G+P ATQAA YL+ Q Sbjct: 49 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVREIPQA-------------------------------MTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQKVQEDPQSSSCLNI----SYANVAG---PVANSNPTVTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQ 321
BLAST of mRNA_P-wetherbeei_contig1135.1.1 vs. uniprot
Match: UPI002021856E (RNA-binding protein Nova-2 n=1 Tax=Myodes glareolus TaxID=447135 RepID=UPI002021856E) HSP 1 Score: 135 bits (339), Expect = 3.570e-31 Identity = 103/324 (31.79%), Postives = 156/324 (48.15%), Query Frame = 3 Query: 741 KLMLNSSQAGNVIGKGGQSIKELQASTHATVRVSSNGATFPGTGDRVCLVSGSIESVLDACGRILHSIHTDDRAGXXXXXXXXXXXXXXXDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGSPEVVQRVLVPAPAAGSIIGRGGAVIKEMNLSSGARVSMGSK-ELVVANERTMTITGPLICVQSAVILLVRKLAEGPTPVLYTNMTPLYSAADVPGGTIPTAQ--GLPTDVLAQALSGPPTTT-----------MQVGIPDNLVGAVVGRGGAKIGELRTRSGAAINISGRDDFMPGTRNRILTISGTPLATQAAHYLLGQ 1670 K+++ S AG++IGKGGQ+I +LQ T AT+++S + +PGT +RVCLV G+ E++ I + +A N +++VP AG IIG+GGA +K + SGA V + K E + ER +T++G V AV +V+K+ E P N++ A V PT P DVL A + T +++ +P+NLVGA++G+GG + E + +GA I IS + +F+PGTRNR +TI+G+P ATQAA YL+ Q Sbjct: 28 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVREIPQA-------------------------------MTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQKVQEDPQSSSCLNISYANVAGPVANSN-PTGSPYASPADVLPAAAAASAATAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQ 319
BLAST of mRNA_P-wetherbeei_contig1135.1.1 vs. uniprot
Match: D2I064_AILME (Uncharacterized protein (Fragment) n=4 Tax=Eutheria TaxID=9347 RepID=D2I064_AILME) HSP 1 Score: 135 bits (339), Expect = 4.400e-31 Identity = 107/329 (32.52%), Postives = 161/329 (48.94%), Query Frame = 3 Query: 741 KLMLNSSQAGNVIGKGGQSIKELQASTHATVRVSSNGATFPGTGDRVCLVSGSIESVLDACGRILHSIHTDDRAGXXXXXXXXXXXXXXXDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGSPEVVQRVLVPAPAAGSIIGRGGAVIKEMNLSSGARVSMGSK-ELVVANERTMTITGPLICVQSAVILLVRKLAEGPT--------------PVLYTNMT--PLYSAADVPGGTIPTAQGLPTDVL-AQALSGPPTTTM-QVGIPDNLVGAVVGRGGAKIGELRTRSGAAINISGRDDFMPGTRNRILTISGTPLATQAAHYLLGQ 1670 K+++ S AG++IGKGGQ+I +LQ T AT+++S + +PGT +RVCLV G+ E++ I + +A N +++VP AG IIG+GGA +K + SGA V + K E + ER +T++G V AV +V+K+ E P PV +N T P S ADV +P A G L A+ L+ + ++ +P+NLVGA++G+GG + E + +GA I IS + +F+PGTRNR +TI+G+P ATQAA YL+ Q Sbjct: 36 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVREIPQA-------------------------------MTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQKVQEDPQSSSCLNISYANVAGPVANSNPTGSPYASPADV----LPAAAGAAGGFLTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQ 329
BLAST of mRNA_P-wetherbeei_contig1135.1.1 vs. uniprot
Match: A0A1S3GH48_DIPOR (RNA-binding protein Nova-1-like n=3 Tax=Boreoeutheria TaxID=1437010 RepID=A0A1S3GH48_DIPOR) HSP 1 Score: 135 bits (339), Expect = 4.400e-31 Identity = 106/327 (32.42%), Postives = 157/327 (48.01%), Query Frame = 3 Query: 741 KLMLNSSQAGNVIGKGGQSIKELQASTHATVRVSSNGATFPGTGDRVCLVSGSIESVLDACGRILHSIHTDDRAGXXXXXXXXXXXXXXXDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGSPEVVQRVLVPAPAAGSIIGRGGAVIKEMNLSSGARVSMGSK-ELVVANERTMTITGPLICVQSAVILLVRKLAEGPT--------------PVLYTNMT--PLYSAADVPGGTIPTAQGLPTDVLAQALSGPPTTTMQVGIPDNLVGAVVGRGGAKIGELRTRSGAAINISGRDDFMPGTRNRILTISGTPLATQAAHYLLGQ 1670 K+++ S AG++IGKGGQ+I +LQ T AT+++S + +PGT +RVCLV G+ E++ I + +A N +++VP AG IIG+GGA +K + SGA V + K E + ER +T++G V AV +V+K+ E P PV +N T P S ADV A G T A S +++ +P+NLVGA++G+GG + E + +GA I IS + +F+PGTRNR +TI+G+P ATQAA YL+ Q Sbjct: 36 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVREIPQA-------------------------------MTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQKVQEDPQSSSCLNISYANVAGPVANSNPTGSPYASPADVLPAAAAAAGGFLTAEKLAAESA--KELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQ 329
BLAST of mRNA_P-wetherbeei_contig1135.1.1 vs. uniprot
Match: A0A454Y0A2_OSTTA (Uncharacterized protein n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A454Y0A2_OSTTA) HSP 1 Score: 134 bits (338), Expect = 4.650e-31 Identity = 102/320 (31.87%), Postives = 154/320 (48.12%), Query Frame = 3 Query: 741 KLMLNSSQAGNVIGKGGQSIKELQASTHATVRVSSNGATFPGTGDRVCLVSGSIESVLDACGRILHSIHTDDRAGXXXXXXXXXXXXXXXDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGSPEVVQRVLVPAPAAGSIIGRGGAVIKEMNLSSGARVSMGSKELVV--ANERTMTITGPLICVQSAVILLVRKLAEGPTPVLYTNMTPLYSA-----ADVPGGTIPTAQGLPTDVLAQALSGPPTTTMQVGIPDNLVGAVVGRGGAKIGELRTRSGAAINISGRDDFMPGTRNRILTISGTPLATQAAHYLLGQLLA 1679 K +++ S AG+VIGKGG +I E QA T A V++S + FPGT DRV +VSG + ++L IL + D +G+P++ ++VP G +IG+GG+ I+ S A + + +++ ++ N+RT+TITG + V AV L+ L E P+ + YS A + GG G ++ G T++ V IPD+L+GAV+GRGG I E++ SG I +S RDDF GTRNR + I+G+ Q A+YLL Q L+ Sbjct: 43 KFLISPSAAGSVIGKGGATINEFQALTGARVQLSRSREVFPGTNDRVVIVSGDLNAILQVLYLILTKLVADGEG--------------------------------------------IDRSGTPQLA--LVVPNGCCGCVIGKGGSKIRNFVEDSQADIKLSNQDRMLPGCNDRTLTITGAMDSVLRAVALVATTLCEDPSYATLVHRQSTYSVQAPLGARIGGGRRSGDHGRSVSGSSRR-GGDDETSILVTIPDSLIGAVLGRGGRTIAEVQVASGCRIKVSARDDFFEGTRNRKVVITGSQEGVQMANYLLTQKLS 315
BLAST of mRNA_P-wetherbeei_contig1135.1.1 vs. uniprot
Match: A4RQR8_OSTLU (Uncharacterized protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4RQR8_OSTLU) HSP 1 Score: 134 bits (338), Expect = 5.280e-31 Identity = 105/329 (31.91%), Postives = 151/329 (45.90%), Query Frame = 3 Query: 741 KLMLNSSQAGNVIGKGGQSIKELQASTHATVRVSSNGATFPGTGDRVCLVSGSIESVLDACGRILHSIHTDDRAGXXXXXXXXXXXXXXXDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGSPEVVQRVLVPAPAAGSIIGRGGAVIKEMNLSSGARVSMGSKELVV--ANERTMTITGPLICVQSAVILLVRKLAEGPTPVLYTNMTPLYSAAD---VPGG-----------TIPTAQGLPTDVLAQALSGPPTTTMQVGIPDNLVGAVVGRGGAKIGELRTRSGAAINISGRDDFMPGTRNRILTISGTPLATQAAHYLLGQLLA 1679 K +++ S AG+VIGKGG +I E QA T A +++S N FPGT DRV +VSG + ++L I+ + D G P+V ++VP + G IIG+GG+ I+ S A + + +++ ++ N+RT+TITG + CV AV L+ L E P + YS + GG P G Q T++ V IPD+L+GAV+GRGG I E++ SG I +S RDDF GTRNR + ISG+ Q A+YLL Q L+ Sbjct: 48 KFLISPSAAGSVIGKGGATINEFQALTGARIQLSRNREVFPGTNDRVVIVSGDLSAILQVLHLIITKLVADGEG--------------------------------------------IDRMGQPQVA--LVVPNSSCGCIIGKGGSKIRSFVEDSQADIKLSNQDRMLPGCNDRTLTITGTIDCVLRAVALVATTLCEDPAYATLVHRQSTYSVQSPLSLQGGGGGRRSGEFNRATPRRYGA-----GQGGGRDDETSILVTIPDSLIGAVLGRGGRTIAEVQVASGCRIKVSDRDDFFEGTRNRKVVISGSAEGVQMANYLLTQKLS 325
BLAST of mRNA_P-wetherbeei_contig1135.1.1 vs. uniprot
Match: L5KQ31_PTEAL (RNA-binding protein Nova-2 n=2 Tax=Boreoeutheria TaxID=1437010 RepID=L5KQ31_PTEAL) HSP 1 Score: 134 bits (336), Expect = 8.610e-31 Identity = 100/313 (31.95%), Postives = 154/313 (49.20%), Query Frame = 3 Query: 741 KLMLNSSQAGNVIGKGGQSIKELQASTHATVRVSSNGATFPGTGDRVCLVSGSIESVLDACGRILHSIHTDDRAGXXXXXXXXXXXXXXXDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGSPEVVQRVLVPAPAAGSIIGRGGAVIKEMNLSSGARVSMGSK-ELVVANERTMTITGPLICVQSAVILLVRKLAEGPTPVLYTNMTPLYSAADVPGGTIPTAQGLPTDVL-AQALSGPPTTTM-QVGIPDNLVGAVVGRGGAKIGELRTRSGAAINISGRDDFMPGTRNRILTISGTPLATQAAHYLLGQ 1670 K+++ S AG++IGKGGQ+I +LQ T AT+++S + +PGT +RVCLV G+ E++ I + +A N +++VP AG IIG+GGA +K + SGA V + K E + ER +T++G V AV +V+K+ E P N++ A V A G L A+ L+ + ++ +P+NLVGA++G+GG + E + +GA I IS + +F+PGTRNR +TI+G+P ATQAA YL+ Q Sbjct: 36 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVREIPQA-------------------------------MTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQKVQEDPQSSSCLNISYANVAGPVANSNPTAAAGAAGGFLTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQ 317 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1135.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig1135.1.1 >prot_P-wetherbeei_contig1135.1.1 ID=prot_P-wetherbeei_contig1135.1.1|Name=mRNA_P-wetherbeei_contig1135.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=329bp MLNSSQAGNVIGKGGQSIKELQASTHATVRVSSNGATFPGTGDRVCLVSGback to top mRNA from alignment at P-wetherbeei_contig1135:775..3209- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig1135.1.1 ID=mRNA_P-wetherbeei_contig1135.1.1|Name=mRNA_P-wetherbeei_contig1135.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2435bp|location=Sequence derived from alignment at P-wetherbeei_contig1135:775..3209- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig1135:775..3209- >mRNA_P-wetherbeei_contig1135.1.1 ID=mRNA_P-wetherbeei_contig1135.1.1|Name=mRNA_P-wetherbeei_contig1135.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=987bp|location=Sequence derived from alignment at P-wetherbeei_contig1135:775..3209- (Phaeothamnion wetherbeei SAG_119_79)back to top |