mRNA_P-wetherbeei_contig11345.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11345.1.1
Unique NamemRNA_P-wetherbeei_contig11345.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11345.1.1 vs. uniprot
Match: A0A835Z303_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z303_9STRA)

HSP 1 Score: 146 bits (368), Expect = 3.130e-35
Identity = 81/171 (47.37%), Postives = 109/171 (63.74%), Query Frame = 1
Query:  733 HSAEGIKRQKKQENRLRNLLKEWGYNVDEELVINAKYGGCMPDAERHCARLDFVIIECTSRILILECDEEQHFWYLINCECSRMMDVVSSLRLAGFTAPVHFLRYSPNGTYLVDEVSQNVPRKDREEALKTRLSEICN-EQVPSQELTVEYMFYDTADGSPTVLQDADYAE 1242
            H+ EG KRQ KQ+ R+ NLLKE GY VDEE  I  +YGGC+PD +RH ARLD  I+  TS ILI+E DEE H  YL++CE +RM+ V  ++   G+T PV F+RY+PNG    D V   + R++RE  L   L  + + +QV  + L + Y+ Y T  G PTV +D D+ E
Sbjct:  342 HTKEGAKRQLKQQMRVANLLKEAGYTVDEECTI--QYGGCVPDPDRHRARLDIYIVTITSCILIVEVDEEAHASYLVSCELTRMLQVHEAILSRGYTVPVVFVRYNPNGCITKDGVCIKMTREEREVVLLEFLGRVRDGQQVFQEPLNLVYLCYPTTYGLPTVCEDTDFDE 510          
BLAST of mRNA_P-wetherbeei_contig11345.1.1 vs. uniprot
Match: A0A835YQ85_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ85_9STRA)

HSP 1 Score: 143 bits (360), Expect = 9.160e-35
Identity = 80/171 (46.78%), Postives = 108/171 (63.16%), Query Frame = 1
Query:  733 HSAEGIKRQKKQENRLRNLLKEWGYNVDEELVINAKYGGCMPDAERHCARLDFVIIECTSRILILECDEEQHFWYLINCECSRMMDVVSSLRLAGFTAPVHFLRYSPNGTYLVDEVSQNVPRKDREEALKTRLSEI-CNEQVPSQELTVEYMFYDTADGSPTVLQDADYAE 1242
            HS EG KRQ KQ+ R+  +LKE GY VDEE  I  +Y GC+PD +RH ARLD  ++  TS ILI+E DEE H  YL++CE +RM+ +  ++   G+T PV F+RYSPNG    D V   + RK+RE AL   L  +   +QV  + L + Y+ Y TA+G PTV +D  + E
Sbjct:  242 HSKEGAKRQLKQQMRVVKVLKEAGYTVDEECTI--QYTGCVPDPDRHHARLDVYVVTITSCILIVEVDEEAHASYLVSCEITRMLQMHEAILTRGYTVPVVFVRYSPNGAITRDGVYFEMTRKEREVALLEFLGRVRAGQQVFEEPLNLVYLCYPTANGLPTVCEDPHFDE 410          
BLAST of mRNA_P-wetherbeei_contig11345.1.1 vs. uniprot
Match: A0A835Z5S0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5S0_9STRA)

HSP 1 Score: 102 bits (255), Expect = 5.170e-22
Identity = 68/183 (37.16%), Postives = 102/183 (55.74%), Query Frame = 1
Query:  763 KQENRLRNLLKEWGYNVDEELVINAKYGGCMPDAERHCARLDFVIIECTSRILILECDEEQHFWYLINCECSRMMDVVSSLR---------LAGFTA-------PVHFLRYSPNGTYLVDEVSQNVPRKDREEALKTRLSEIC-NEQVPSQELTVEYMFYDTADGSPTVLQDADYAEMLAKCV 1260
            K+++RLR +L E  Y VD E  I  + GGC+P+A++H AR+DF ++     I+I+ECDE  H  YL+ CE +RM  V   +          +AG T        PV F+R++P+    VD       RKDRE AL   L+E+   ++V ++ L + Y+ YD   G P+V +D DY+E +  CV
Sbjct:    6 KKQDRLRQVL-EAVYTVDRECHIRYE-GGCVPNADKHHARVDFHVVGIVHLIVIIECDEGGHVDYLVRCELTRMEQVHEGVLKAHAQIAADMAGETEALQIPCPPVLFVRFNPDNC-TVDGAKVQNRRKDREAALMRFLNEVALGQRVFTETLNIVYIGYDMEGGEPSVCKDPDYSEQMKACV 185          
BLAST of mRNA_P-wetherbeei_contig11345.1.1 vs. uniprot
Match: A0A835YYJ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYJ7_9STRA)

HSP 1 Score: 102 bits (253), Expect = 3.580e-20
Identity = 66/184 (35.87%), Postives = 101/184 (54.89%), Query Frame = 1
Query:  718 HILKHHSAEGIKRQKKQENRLRNLLKEWGYNVDEELVINAKYGGCMPDAERHCARLDFVIIECTSRILILECDEEQHFWYLINCECSRMMDVVSSLRLA--GFTAPVHFLRYSPNGTYLVDEVSQNVPRKDREEALKTRLSEICNEQVPSQE-LTVEYMFYDTADGSPTVLQDADYAEMLAKCV 1260
            HI   H+ EG  ++  +++R+R +L+E  Y VD E  I  +  GC+PD ++H AR+DF I+  T  I+I+ECDE  H  Y++ CE SRM  +  ++  A      PV F+RY+P+    +D   Q   R+++E  L T LS++    V   E L + Y+ YD     P V  D D+ E +  CV
Sbjct:  209 HIQCWHTKEGKAKKITKQDRVRQILEEV-YAVDSECHIKYR-NGCVPDPDKHYARIDFHIVGITHTIVIVECDEGGHADYMLTCELSRMEQIHEAILKACPDGAPPVLFVRYNPD-MRTIDGTPQATKRREKESELMTFLSDVAEGNVVFTETLNIAYLGYDMEGCVPCVCNDPDFPEQMKGCV 389          
BLAST of mRNA_P-wetherbeei_contig11345.1.1 vs. uniprot
Match: A0A835YKM9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKM9_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.100e-19
Identity = 66/202 (32.67%), Postives = 107/202 (52.97%), Query Frame = 1
Query:  709 LTTHILKHHSAEGIKRQKKQENRLRNLLKEWGYNVDEELVINAKYGGCMPDAERHCARLDFVIIECTSRILILECDEEQHFWYLINCECSRM--------------MDVVSSLRLAGFTA--PVHFLRYSPNGTYLVDEVSQNVPRKDREEALKTRLSEICNEQVP-SQELTVEYMFYDTADGSPTVLQDADYAEMLAKCVI 1263
            +  H  + H+ EG++ + ++++RLR +L E  Y VD E  I  K GGC+PD ++ C+RLDF ++  T+ I+I+ECDE +H  Y++ CE SRM              M  V     A  T   PV F+RY+P+   +VD V +   R  +E  + + LS+I +  +     L + Y+ Y T    P V  D D++  +  C++
Sbjct:    1 MQKHYQRWHTKEGMESKIRKQDRLRKVL-EGTYAVDSECHIRYK-GGCVPDPDKFCSRLDFHVVGITNAIVIVECDENEHNDYVLRCELSRMEQAHEGVIKGQFAEMKAVKGEATAMATPLRPVVFVRYNPD-CRMVDGVGEKRSRASKEADMMSVLSDIESGVLALPHPLNLVYVNYSTYHHKPVVSYDPDFSPQMRACIV 199          
BLAST of mRNA_P-wetherbeei_contig11345.1.1 vs. uniprot
Match: A0A835Z3M2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3M2_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.770e-18
Identity = 62/194 (31.96%), Postives = 104/194 (53.61%), Query Frame = 1
Query:  733 HSAEGIKRQKKQENRLRNLLKEWGYNVDEELVINAKYGGCMPDAERHCARLDFVIIECTSRILILECDEEQHFWYLINCECSRMMDVVSSLRLAGFTA----------------PVHFLRYSPNGTYLVDEVSQNVPRKDREEALKTRLSEICNEQVP-SQELTVEYMFYDTADGSPTVLQDADYAEMLAKCVI 1263
            H+ EG +++ ++++R+R +L E  Y VD E  +  + GGC+PD ++ CAR+D+ ++  T+ I+I+ECDE+ H  Y + CE SRM  +  ++  A F+                 PV F+R++P+  + VD   +   R DRE  L   L +I +  +     L + Y+ Y   DG P V  D D+A  +  CV+
Sbjct:  226 HTVEGQQKKIRKQDRVRQVL-ESAYTVDSECHVRYQ-GGCVPDPDKFCARIDYHVLGITNAIVIVECDEQGHKDYTLTCELSRMEQIHEAIIKANFSMVVAKAGEAYALTASMKPVVFVRFNPD-PWKVDGEKELSRRCDREAVLLEVLQDISDGTLELPHPLNLVYIGYSMLDGEPVVCGDPDFAPQMRGCVV 416          
BLAST of mRNA_P-wetherbeei_contig11345.1.1 vs. uniprot
Match: A0A835ZGJ8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGJ8_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 2.310e-18
Identity = 65/195 (33.33%), Postives = 104/195 (53.33%), Query Frame = 1
Query:  733 HSAEGIKRQKKQENRLRNLLKEWGYNVDEELVINAKYGGCMPDAERHCARLDFVIIECTSRILILECDEEQHFWYLINCECSRMMDV------------------VSSLRLAGFTAPVHFLRYSPNGTYLVDEVSQNVPRKDREEALKTRLSEI-CNEQVPSQELTVEYMFYDTADGSPTVLQDADYAEMLAKCV 1260
            H+ EG+ ++ ++++RLR +L E  Y V+ E  +    GGC+PD ++H AR+DF I+  T  ++I+ECDE  H  YL+ CE +RM  V                  V +LR+A    PV F+R++P+    VD V     +K++E  L   L+E+ C  +   + L + Y+ Y +  G P V  D DY+  +  CV
Sbjct:  263 HTKEGMAKKIRKQDRLRQVL-EAVYAVNTECHVRY-IGGCVPDPDKHYARIDFHILGITQVVVIVECDEGGHKDYLLRCELTRMEQVHEAILKAHTQATRKALGEVQALRIAA--PPVLFVRFNPDNC-AVDGVRVKATQKEKEGVLMRFLAEVACGTRAFDETLNIVYIGYSSEGGVPVVCNDPDYSAQMRACV 452          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11345.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A835Z303_9STRA3.130e-3547.37Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YQ85_9STRA9.160e-3546.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z5S0_9STRA5.170e-2237.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YYJ7_9STRA3.580e-2035.87Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YKM9_9STRA1.100e-1932.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z3M2_9STRA1.770e-1831.96Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZGJ8_9STRA2.310e-1833.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11345contigP-wetherbeei_contig11345:213..1478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1266
Hectar predicted targeting categoryother localisation
Exons1
Cds size1266
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185907.6666114-CDS-P-wetherbeei_contig11345:212..14781683185907.6666114-CDS-P-wetherbeei_contig11345:212..1478Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11345 213..1478 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11345.1.1prot_P-wetherbeei_contig11345.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11345 213..1478 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11345.1.1

>prot_P-wetherbeei_contig11345.1.1 ID=prot_P-wetherbeei_contig11345.1.1|Name=mRNA_P-wetherbeei_contig11345.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=422bp
LAVHERLHSSKHRSCSFAGCDYICSQYTQMKIHEITHTAVYNCTVTECTF
KCIGMEALLEHKRIHVDDNAKPFKCAVEGCQRAFKHNCELTKHMHSHNGT
TPRPFACNVEGCSFKAPSQADLIKHHRIHTKEKPFECNLCDYKCTQKAHL
QVHIRKHSGEKPYSCDHEGCTYSCTTNSAMTIHKRIHDGVCDVPGCSSYS
CTTSSYMAVHMRNHAGIKPYECQFENCDYASSQNANLTTHILKHHSAEGI
KRQKKQENRLRNLLKEWGYNVDEELVINAKYGGCMPDAERHCARLDFVII
ECTSRILILECDEEQHFWYLINCECSRMMDVVSSLRLAGFTAPVHFLRYS
PNGTYLVDEVSQNVPRKDREEALKTRLSEICNEQVPSQELTVEYMFYDTA
DGSPTVLQDADYAEMLAKCVI*
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mRNA from alignment at P-wetherbeei_contig11345:213..1478+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11345.1.1 ID=mRNA_P-wetherbeei_contig11345.1.1|Name=mRNA_P-wetherbeei_contig11345.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1266bp|location=Sequence derived from alignment at P-wetherbeei_contig11345:213..1478+ (Phaeothamnion wetherbeei SAG_119_79)
TTGGCAGTTCATGAACGCCTTCATTCGTCAAAACATCGCTCCTGCAGCTT TGCCGGATGCGATTACATATGTTCACAATATACGCAGATGAAAATACATG AAATTACTCACACTGCAGTCTACAATTGCACAGTCACAGAGTGCACGTTT AAATGCATTGGAATGGAAGCCCTGTTAGAACACAAGCGAATCCACGTTGA CGATAACGCCAAACCTTTCAAATGTGCAGTAGAAGGATGTCAGCGTGCAT TTAAACATAATTGTGAGCTCACCAAGCATATGCACTCGCATAATGGCACA ACGCCTCGACCATTTGCGTGCAACGTTGAAGGATGCTCATTCAAGGCACC CTCACAAGCTGATTTGATCAAACATCATCGTATCCACACCAAGGAGAAAC CGTTCGAATGCAACCTATGTGACTACAAGTGCACGCAAAAGGCTCATTTG CAAGTTCACATTCGCAAGCATTCTGGAGAAAAGCCGTACAGTTGTGACCA TGAGGGCTGCACGTACTCCTGCACAACAAATTCCGCTATGACCATCCACA AGCGCATCCACGACGGAGTATGCGACGTCCCTGGCTGCTCTTCTTATTCA TGCACCACGAGTTCTTACATGGCTGTGCACATGCGGAACCATGCCGGGAT CAAGCCTTACGAATGCCAGTTTGAGAACTGTGATTATGCCTCATCACAGA ACGCCAACCTCACGACTCACATCCTGAAACATCATTCTGCTGAGGGAATC AAGCGTCAGAAGAAGCAGGAGAACCGCCTGCGAAACCTTTTGAAAGAATG GGGCTACAATGTCGACGAAGAGCTTGTCATAAATGCAAAGTACGGCGGCT GCATGCCGGACGCGGAACGCCATTGTGCGCGGCTGGACTTTGTCATTATC GAGTGCACATCGCGGATCTTGATCCTGGAGTGCGACGAAGAGCAACACTT TTGGTACCTGATAAACTGTGAATGCTCACGGATGATGGATGTTGTCTCGT CACTGAGACTGGCCGGTTTCACGGCACCCGTGCACTTTCTGAGGTACTCA CCCAACGGAACCTACCTGGTCGACGAAGTGTCTCAGAACGTTCCCCGGAA GGACCGCGAGGAGGCCCTGAAGACCCGGCTTAGTGAGATATGCAACGAGC AAGTTCCAAGCCAGGAGTTGACGGTCGAGTACATGTTCTATGATACCGCG GACGGCTCTCCAACCGTTCTTCAAGATGCGGATTACGCAGAAATGCTGGC AAAATGCGTGATTTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11345:213..1478+

>mRNA_P-wetherbeei_contig11345.1.1 ID=mRNA_P-wetherbeei_contig11345.1.1|Name=mRNA_P-wetherbeei_contig11345.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1266bp|location=Sequence derived from alignment at P-wetherbeei_contig11345:213..1478+ (Phaeothamnion wetherbeei SAG_119_79)
TTGGCAGTTCATGAACGCCTTCATTCGTCAAAACATCGCTCCTGCAGCTT
TGCCGGATGCGATTACATATGTTCACAATATACGCAGATGAAAATACATG
AAATTACTCACACTGCAGTCTACAATTGCACAGTCACAGAGTGCACGTTT
AAATGCATTGGAATGGAAGCCCTGTTAGAACACAAGCGAATCCACGTTGA
CGATAACGCCAAACCTTTCAAATGTGCAGTAGAAGGATGTCAGCGTGCAT
TTAAACATAATTGTGAGCTCACCAAGCATATGCACTCGCATAATGGCACA
ACGCCTCGACCATTTGCGTGCAACGTTGAAGGATGCTCATTCAAGGCACC
CTCACAAGCTGATTTGATCAAACATCATCGTATCCACACCAAGGAGAAAC
CGTTCGAATGCAACCTATGTGACTACAAGTGCACGCAAAAGGCTCATTTG
CAAGTTCACATTCGCAAGCATTCTGGAGAAAAGCCGTACAGTTGTGACCA
TGAGGGCTGCACGTACTCCTGCACAACAAATTCCGCTATGACCATCCACA
AGCGCATCCACGACGGAGTATGCGACGTCCCTGGCTGCTCTTCTTATTCA
TGCACCACGAGTTCTTACATGGCTGTGCACATGCGGAACCATGCCGGGAT
CAAGCCTTACGAATGCCAGTTTGAGAACTGTGATTATGCCTCATCACAGA
ACGCCAACCTCACGACTCACATCCTGAAACATCATTCTGCTGAGGGAATC
AAGCGTCAGAAGAAGCAGGAGAACCGCCTGCGAAACCTTTTGAAAGAATG
GGGCTACAATGTCGACGAAGAGCTTGTCATAAATGCAAAGTACGGCGGCT
GCATGCCGGACGCGGAACGCCATTGTGCGCGGCTGGACTTTGTCATTATC
GAGTGCACATCGCGGATCTTGATCCTGGAGTGCGACGAAGAGCAACACTT
TTGGTACCTGATAAACTGTGAATGCTCACGGATGATGGATGTTGTCTCGT
CACTGAGACTGGCCGGTTTCACGGCACCCGTGCACTTTCTGAGGTACTCA
CCCAACGGAACCTACCTGGTCGACGAAGTGTCTCAGAACGTTCCCCGGAA
GGACCGCGAGGAGGCCCTGAAGACCCGGCTTAGTGAGATATGCAACGAGC
AAGTTCCAAGCCAGGAGTTGACGGTCGAGTACATGTTCTATGATACCGCG
GACGGCTCTCCAACCGTTCTTCAAGATGCGGATTACGCAGAAATGCTGGC
AAAATGCGTGATTTAA
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