mRNA_P-wetherbeei_contig11343.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11343.1.1
Unique NamemRNA_P-wetherbeei_contig11343.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11343.1.1 vs. uniprot
Match: A0A2D7I3C1_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2D7I3C1_9DELT)

HSP 1 Score: 197 bits (501), Expect = 1.810e-59
Identity = 97/162 (59.88%), Postives = 115/162 (70.99%), Query Frame = 1
Query:    4 EDEAYGWPFIKMPGMGALPWINDRGAAEAYLAENAPDVHNFRAK-LYARERYAKYRRGTVLFYRHDTWHRGTPVKANALRCVQNLTFRRADADWIPSWNMGTARAMYKENMVVEKMVASASVTQRNVLGFPAPGHRYWTAATLAATAARYEPLGMDMAPYEK 486
            ED AY WP+  MPG GAL W+NDR AAEA L +  PDV  FR + LY+RE  A++R GTVLFYRHD WHRGT ++    R  QNL FRRADA+WI S   G+A  MY+     E+++A+ASV+QR VLGFPAPGH +WT   L A  ARY PLGMDMAPYEK
Sbjct:  186 EDPAYAWPYQNMPGFGALRWVNDREAAEAELKQAVPDVAEFRQEHLYSREVRARFRLGTVLFYRHDLWHRGTWLREGRRRLAQNLCFRRADAEWIHSVQPGSAWRMYRPGQPTERLIANASVSQRCVLGFPAPGHSHWTPERLEAVRARYGPLGMDMAPYEK 347          
BLAST of mRNA_P-wetherbeei_contig11343.1.1 vs. uniprot
Match: A0A424NJP6_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TMED182 TaxID=1986741 RepID=A0A424NJP6_9GAMM)

HSP 1 Score: 193 bits (491), Expect = 4.190e-58
Identity = 88/159 (55.35%), Postives = 115/159 (72.33%), Query Frame = 1
Query:    4 EDEAYGWPFIKMPGMGALPWINDRGAAEAYLAENAPDVHNFRAKLYARERYAKYRRGTVLFYRHDTWHRGTPVKANALRCVQNLTFRRADADWIPSWNMGTARAMYKENMVVEKMVASASVTQRNVLGFPAPGHRYWTAATLAATAARYEPLGMDMAPY 480
            +D AY WP I  PG+GALP+INDR +AEA L  + P++ +FRA+LY RE Y  +R+G +L YRHDTWHRGTP+K    R  QN+TFR ADA+W+ + + G + + Y+ +  +EK +A+ SV QR V+GFPAPG+ YWT ATLAA AARY PLG D  PY
Sbjct:  176 DDVAYRWPIIDSPGIGALPFINDRASAEAVLKASHPEMFDFRAQLYDREAYVDFRQGDILLYRHDTWHRGTPLKPGTRRLAQNMTFRVADAEWVSTLHPGWSWSAYRPSQFLEKWIATCSVLQRTVMGFPAPGNAYWTEATLAAVAARYGPLGFDPTPY 334          
BLAST of mRNA_P-wetherbeei_contig11343.1.1 vs. uniprot
Match: A0A1Z8R8F4_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TMED30 TaxID=1986759 RepID=A0A1Z8R8F4_9GAMM)

HSP 1 Score: 193 bits (491), Expect = 5.780e-58
Identity = 92/165 (55.76%), Postives = 119/165 (72.12%), Query Frame = 1
Query:    7 DEAYGWPFIKMPGMGALPWINDRGAAEAYLAENAPDVHNFRAK-LYARERYAKYRRGTVLFYRHDTWHRGTPVKANALRCVQNLTFRRADADWIPSWNMGTARAMYKENMVVEKMVASASVTQRNVLGFPAPGHRYWTAATLAATAARYEPLGMDMAPYEKAAAE 498
            D AY WP ++ PG+  L ++NDR  AEAY+AE+ P+  +FR K LYARE  A+Y+ G+VLFYRHDTWHRG PVKANALR VQNLTF +   DW+   + G   +MY+ + ++EK+VA A+V  R+VLGFP PGH YWT+ TLAA  ARY+  G+DM+PY    AE
Sbjct:  182 DPAYPWPIVQTPGVAGLDYVNDRDKAEAYMAEHNPEAADFREKHLYARELVAEYKFGSVLFYRHDTWHRGRPVKANALRLVQNLTFTKIGCDWLNVLHPGWCWSMYRRDKLMEKLVAQATVDXRSVLGFPPPGHSYWTSRTLAAVEARYQAFGIDMSPYYAPLAE 346          
BLAST of mRNA_P-wetherbeei_contig11343.1.1 vs. uniprot
Match: A0A7C7UEG3_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7C7UEG3_9DELT)

HSP 1 Score: 193 bits (491), Expect = 6.960e-58
Identity = 92/159 (57.86%), Postives = 112/159 (70.44%), Query Frame = 1
Query:    7 DEAYGWPFIKMPGMGALPWINDRGAAEAYLAENAPDVHNFRAK-LYARERYAKYRRGTVLFYRHDTWHRGTPVKANALRCVQNLTFRRADADWIPSWNMGTARAMYKENMVVEKMVASASVTQRNVLGFPAPGHRYWTAATLAATAARYEPLGMDMAPY 480
            D AY WP +  PG+GA+ WINDR  AE +L E  P+   FRA+ LY RER A++  GT LFYRHDTWHRGTP+K    R V NLTFR+A ++WI   + G A  MY+  MV+E+++A ASV QR VLGFPAPGH YWT  T+ A  ARY PLGMD+APY
Sbjct:  192 DPAYAWPIVSTPGVGAIEWINDRTKAEKHLGEVDPNAQRFRAENLYPRERRARFAPGTALFYRHDTWHRGTPLKLGKRRLVHNLTFRKASSEWISVLHSGWAWKMYQPGMVLERLIAQASVDQRCVLGFPAPGHPYWTPETVEAIRARYGPLGMDVAPY 350          
BLAST of mRNA_P-wetherbeei_contig11343.1.1 vs. uniprot
Match: A0A2D5L8A1_9GAMM (Uncharacterized protein n=3 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2D5L8A1_9GAMM)

HSP 1 Score: 191 bits (486), Expect = 3.440e-57
Identity = 90/163 (55.21%), Postives = 116/163 (71.17%), Query Frame = 1
Query:    4 EDEAYGWPFIKMPGMGALPWINDRGAAEAYLAENAPDVHNFRAK-LYARERYAKYRRGTVLFYRHDTWHRGTPVKANALRCVQNLTFRRADADWIPSWNMGTARAMYKENMVVEKMVASASVTQRNVLGFPAPGHRYWTAATLAATAARYEPLGMDMAPYEKA 489
            +D AY WP I+ PG+  L ++NDR  AEAY+ E+ PD  NFR + LYARE  A+Y+ G+VLFYRHDTWHRG PVKA ALR V NLTF +   DW+   + G + +MY+ + ++EK+VA A+V QR+VLGFP PGH YWT  TL A  ARY+  G+DM+PY  A
Sbjct:  186 DDPAYPWPIIQTPGVAGLDYVNDRDKAEAYMVEHNPDAANFRQQHLYARELVARYQFGSVLFYRHDTWHRGRPVKAQALRLVHNLTFTKVGCDWLNVLHPGWSWSMYRRDKLMEKLVAEATVEQRSVLGFPPPGHXYWTPQTLLAVEARYQAFGIDMSPYRAA 348          
BLAST of mRNA_P-wetherbeei_contig11343.1.1 vs. uniprot
Match: A0A2E8C0F4_9GAMM (Uncharacterized protein (Fragment) n=3 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E8C0F4_9GAMM)

HSP 1 Score: 191 bits (486), Expect = 3.620e-57
Identity = 94/160 (58.75%), Postives = 115/160 (71.88%), Query Frame = 1
Query:    4 EDEAYGWPFIKMPGMGALPWINDRGAAEAYLAENAPDVHNFRAK-LYARERYAKYRRGTVLFYRHDTWHRGTPVKANALRCVQNLTFRRADADWIPSWNMGTARAMYKENMVVEKMVASASVTQRNVLGFPAPGHRYWTAATLAATAARYEPLGMDMAPY 480
            ED AY WP I+ PG+G L +INDR  AEAY+AE  P    FRA+ LY RE  AKY+ G+VL YRHDTWHRG PV  +ALR  QNLTF +A  +W+   + G + +MYK +  +EK++A A+V QR VLGFPAPGH YWTA T+AA  ARY PLGMDM+PY
Sbjct:  192 EDPAYPWPIIQTPGVGDLKYINDRRKAEAYMAEQDPQGAAFRAQHLYPREVLAKYQFGSVLLYRHDTWHRGRPVTPDALRLAQNLTFTKAGREWLTPAHAGWSWSMYKPDKFMEKLIARATVEQRTVLGFPAPGHDYWTAYTIAAVEARYAPLGMDMSPY 351          
BLAST of mRNA_P-wetherbeei_contig11343.1.1 vs. uniprot
Match: A0A2E4UPC6_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E4UPC6_9GAMM)

HSP 1 Score: 189 bits (480), Expect = 3.370e-56
Identity = 88/167 (52.69%), Postives = 111/167 (66.47%), Query Frame = 1
Query:    4 EDEAYGWPFIKMPGMGALPWINDRGAAEAYLAENAPDVHNFRAKLYARERYAKYRRGTVLFYRHDTWHRGTPVKANALRCVQNLTFRRADADWIPSWNMGTARAMYKENMVVEKMVASASVTQRNVLGFPAPGHRYWTAATLAATAARYEPLGMDMAPYEKAAAERD 504
            ED  Y WP +  PG+G L ++ND+ AAEAYLA   P++ ++RA+LY  ERY  +  G VL YRHDTWHRGTP+    LR   NLTFRRADA+WI + + G A + Y+ +   EK++A AS+ QR VLGFP P   YWT AT+ A  AR+ P GMDM PY  A A RD
Sbjct:  192 EDPLYQWPIVDTPGVGELDYVNDKAAAEAYLAVQRPEIASWRAQLYRSERYVHFHAGDVLLYRHDTWHRGTPMTEGKLRLAHNLTFRRADAEWISTLHAGWAWSAYRPDKFFEKLIARASLDQRAVLGFPQPASHYWTPATIKAVEARHGPFGMDMTPYRAALAHRD 358          
BLAST of mRNA_P-wetherbeei_contig11343.1.1 vs. uniprot
Match: A0A2E6MD04_9GAMM (Uncharacterized protein n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E6MD04_9GAMM)

HSP 1 Score: 188 bits (477), Expect = 6.770e-56
Identity = 90/163 (55.21%), Postives = 114/163 (69.94%), Query Frame = 1
Query:    4 EDEAYGWPFIKMPGMGALPWINDRGAAEAYLAENAPDVHNFRAK-LYARERYAKYRRGTVLFYRHDTWHRGTPVKANALRCVQNLTFRRADADWIPSWNMGTARAMYKENMVVEKMVASASVTQRNVLGFPAPGHRYWTAATLAATAARYEPLGMDMAPYEKA 489
            +D AY WP  + PG+  L ++NDR  AEAY+AE+ P+   FR + LYARE  A+YR G+VLFYRHDTWHRG PVK+ ALR VQNLTF +   DW+   + G   +MY+ + ++EK+VA +SV QR VLGFP PGH YWT  TLAA  ARY   G+DM+PY  A
Sbjct:  181 DDPAYPWPITQTPGVAGLDYVNDRSKAEAYMAEHRPEAAQFRQQHLYARELVARYRFGSVLFYRHDTWHRGRPVKSGALRLVQNLTFSKIGHDWLNVLHPGWCWSMYRGDKLMEKLVAESSVEQRGVLGFPLPGHAYWTLHTLAAVEARYRAFGIDMSPYRVA 343          
BLAST of mRNA_P-wetherbeei_contig11343.1.1 vs. uniprot
Match: A0A0G4IQ42_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IQ42_PLABS)

HSP 1 Score: 188 bits (478), Expect = 9.150e-56
Identity = 89/161 (55.28%), Postives = 109/161 (67.70%), Query Frame = 1
Query:    1 AEDEAYGWPFIKMPGMGALPWINDRGAAEAYLAENAPDVHNFRAKLYARERYAKYRRGTVLFYRHDTWHRGTPVKANALRCVQNLTFRRADADWIPSWNMGTARAMY-KENMVVEKMVASASVTQRNVLGFPAPGHRYWTAATLAATAARYEPLGMDMAPY 480
            ++D AY +P + MPG G +P++NDR A E YLAE+ PD    R  LY RE + K+R GTVL YRHD WHRGTPVK  ALR V NL ++RADA W+  WN G A+ MY     ++EK+VA+ASV QR +LG P PGHRYWT  T+ A  ARY   G D APY
Sbjct:  181 SDDPAYEYPLVAMPGYGGIPFVNDRTACEQYLAEHHPDYFQLRQGLYERELHVKFRMGTVLLYRHDVWHRGTPVKPGALRVVANLGYKRADAHWVSVWNRGWAKNMYWYSTPIMEKIVANASVEQRALLGIPPPGHRYWTPTTINAAVARYGVFGFDPAPY 341          
BLAST of mRNA_P-wetherbeei_contig11343.1.1 vs. uniprot
Match: A0A3D1XMJ3_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D1XMJ3_9GAMM)

HSP 1 Score: 187 bits (476), Expect = 9.320e-56
Identity = 90/163 (55.21%), Postives = 116/163 (71.17%), Query Frame = 1
Query:    4 EDEAYGWPFIKMPGMGALPWINDRGAAEAYLAENAPDVHNFRAK-LYARERYAKYRRGTVLFYRHDTWHRGTPVKANALRCVQNLTFRRADADWIPSWNMGTARAMYKENMVVEKMVASASVTQRNVLGFPAPGHRYWTAATLAATAARYEPLGMDMAPYEKA 489
            +D AY WP ++ PG+G L +INDR AAEAY+ E  P    FR + LYARE  AKY+ G+VLFYRHDTWHRG PVK +ALR VQNLTF +   DW+   + G + +MY+ + ++EK++A ASV QR VLGFP PGH YW+  T+AA  ARY+  G+DM  Y+KA
Sbjct:  181 DDPAYPWPIVQAPGVGDLDYINDRQAAEAYMTERDPAAAAFRQQHLYARELVAKYQFGSVLFYRHDTWHRGRPVKQDALRLVQNLTFTKTGRDWLGVLHSGWSWSMYESDKLMEKLIAQASVDQRTVLGFPPPGHDYWSPETVAAVEARYQAFGIDMTAYKKA 343          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11343.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D7I3C1_9DELT1.810e-5959.88Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A424NJP6_9GAMM4.190e-5855.35Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A1Z8R8F4_9GAMM5.780e-5855.76Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A7C7UEG3_9DELT6.960e-5857.86Uncharacterized protein (Fragment) n=1 Tax=Myxococ... [more]
A0A2D5L8A1_9GAMM3.440e-5755.21Uncharacterized protein n=3 Tax=Gammaproteobacteri... [more]
A0A2E8C0F4_9GAMM3.620e-5758.75Uncharacterized protein (Fragment) n=3 Tax=Gammapr... [more]
A0A2E4UPC6_9GAMM3.370e-5652.69Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A2E6MD04_9GAMM6.770e-5655.21Uncharacterized protein n=2 Tax=Gammaproteobacteri... [more]
A0A0G4IQ42_PLABS9.150e-5655.28Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
A0A3D1XMJ3_9GAMM9.320e-5655.21Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11343contigP-wetherbeei_contig11343:1512..2158 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog6669.EFX66626
PFAMsPhyH
Model size510
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.06e-56
EggNOG OGs2CCFM@1|root,2S042@2759|Eukaryota,3AM5W@33154|Opisthokonta,3C0BK@33208|Metazoa
Cds size510
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185907.6366522-CDS-P-wetherbeei_contig11343:1511..16971683185907.6366522-CDS-P-wetherbeei_contig11343:1511..1697Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11343 1512..1697 -
1683185907.64498-CDS-P-wetherbeei_contig11343:1834..21581683185907.64498-CDS-P-wetherbeei_contig11343:1834..2158Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11343 1835..2158 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11343.1.1prot_P-wetherbeei_contig11343.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11343 1512..2158 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11343.1.1

>prot_P-wetherbeei_contig11343.1.1 ID=prot_P-wetherbeei_contig11343.1.1|Name=mRNA_P-wetherbeei_contig11343.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=170bp
AEDEAYGWPFIKMPGMGALPWINDRGAAEAYLAENAPDVHNFRAKLYARE
RYAKYRRGTVLFYRHDTWHRGTPVKANALRCVQNLTFRRADADWIPSWNM
GTARAMYKENMVVEKMVASASVTQRNVLGFPAPGHRYWTAATLAATAARY
EPLGMDMAPYEKAAAERDAG
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mRNA from alignment at P-wetherbeei_contig11343:1512..2158-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11343.1.1 ID=mRNA_P-wetherbeei_contig11343.1.1|Name=mRNA_P-wetherbeei_contig11343.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=647bp|location=Sequence derived from alignment at P-wetherbeei_contig11343:1512..2158- (Phaeothamnion wetherbeei SAG_119_79)
GCCGAGGACGAAGCTTACGGCTGGCCGTTCATCAAAATGCCGGGCATGGG GGCGCTGCCGTGGATCAATGACCGTGGCGCCGCCGAGGCGTACCTGGCGG AGAACGCCCCGGACGTGCACAACTTCCGCGCCAAGCTGTACGCGCGGGAG CGTTACGCGAAATACCGGCGCGGCACGGTTCTCTTCTATCGTCACGACAC GTGGCACCGGGGCACGCCGGTGAAGGCCAACGCCCTGCGCTGCGTCCAAA ACCTCACTTTTCGCCGCGCCGACGCGGACTGGATCCCATCATGGAACATG GGCACGGCTCGGGCGATGTACAAGGTGTGTGGAACTGTTTCAGGAAAGCG GCTGGATGATTTCAGAGCAATGCCTTCGAATTTAAGTCCCGTCAATCCGC CTTATGCTCGTTCAGAAACATGAATCTTGTAAAATGGTTGCCTCGTTGTC CCTTCCGTCAGGAAAATATGGTGGTCGAGAAGATGGTCGCATCAGCCAGC GTCACGCAGCGCAACGTCCTCGGCTTTCCAGCGCCCGGCCACCGCTACTG GACCGCCGCCACGCTCGCGGCTACGGCGGCACGTTACGAGCCACTGGGCA TGGACATGGCGCCCTACGAGAAGGCGGCCGCCGAACGCGACGCCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11343:1512..2158-

>mRNA_P-wetherbeei_contig11343.1.1 ID=mRNA_P-wetherbeei_contig11343.1.1|Name=mRNA_P-wetherbeei_contig11343.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig11343:1512..2158- (Phaeothamnion wetherbeei SAG_119_79)
GCCGAGGACGAAGCTTACGGCTGGCCGTTCATCAAAATGCCGGGCATGGG
GGCGCTGCCGTGGATCAATGACCGTGGCGCCGCCGAGGCGTACCTGGCGG
AGAACGCCCCGGACGTGCACAACTTCCGCGCCAAGCTGTACGCGCGGGAG
CGTTACGCGAAATACCGGCGCGGCACGGTTCTCTTCTATCGTCACGACAC
GTGGCACCGGGGCACGCCGGTGAAGGCCAACGCCCTGCGCTGCGTCCAAA
ACCTCACTTTTCGCCGCGCCGACGCGGACTGGATCCCATCATGGAACATG
GGCACGGCTCGGGCGATGTACAAGGAAAATATGGTGGTCGAGAAGATGGT
CGCATCAGCCAGCGTCACGCAGCGCAACGTCCTCGGCTTTCCAGCGCCCG
GCCACCGCTACTGGACCGCCGCCACGCTCGCGGCTACGGCGGCACGTTAC
GAGCCACTGGGCATGGACATGGCGCCCTACGAGAAGGCGGCCGCCGAACG
CGACGCCGGC
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