mRNA_P-wetherbeei_contig11340.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11340.2.1
Unique NamemRNA_P-wetherbeei_contig11340.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig11340.2.1 vs. uniprot
Match: A0A7S2EG69_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EG69_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 7.460e-8
Identity = 25/40 (62.50%), Postives = 28/40 (70.00%), Query Frame = 3 
Query:  279 LRSLPCGHIFHRGCIDTWLLGVFSETGCCTNSCPVCKARP 398
            LR LPCGH+FH GCID WL G+ S   C T+ CP CK RP
Sbjct:  135 LRVLPCGHLFHIGCIDKWLSGIHSHEECFTSGCPTCKKRP 174
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11340.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S2EG69_9STRA7.460e-862.50Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11340contigP-wetherbeei_contig11340:455..2170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2850.Phatr34003
Model size1716
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.52e-05
EggNOG OGsKOG4628@1|root,KOG4628@2759|Eukaryota,2XHMT@2836|Bacillariophyta
DescriptionRING-like zinc finger
Cds size903
COG categoryO
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185907.5986474-UTR-P-wetherbeei_contig11340:454..6751683185907.5986474-UTR-P-wetherbeei_contig11340:454..675Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11340 455..675 +
1683185907.6145911-UTR-P-wetherbeei_contig11340:1578..21701683185907.6145911-UTR-P-wetherbeei_contig11340:1578..2170Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11340 1579..2170 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185907.60684-CDS-P-wetherbeei_contig11340:675..15781683185907.60684-CDS-P-wetherbeei_contig11340:675..1578Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11340 676..1578 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11340.2.1prot_P-wetherbeei_contig11340.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11340 676..1578 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11340.2.1

>prot_P-wetherbeei_contig11340.2.1 ID=prot_P-wetherbeei_contig11340.2.1|Name=mRNA_P-wetherbeei_contig11340.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=301bp
MPPLRIAIFSPAGFSPLPQLRSLPCGHIFHRGCIDTWLLGVFSETGCCTN
SCPVCKARPVTTTVGAGAHGGGNGRAGSVSVTESGDSQSGDVQVSISAEA
RTSAAPSDACISESGGSSGGSVSGGTTRSGIPAWAFLQAGNHLAARDGAG
GSRARYRSVSVGSRTRTADGGPDRLGVSWSAGSSGGGGARAGHDDHDDDD
DDAGTNNDRGGGRQAGASSGRGLNLFFGAGSSAALFRAGGGGGAGAGGGT
ALRMGENSAQSGSPSRLGGSEHGRRISFNSCPGSTGPAPLPPRDEGWVQQ
*
back to top

mRNA from alignment at P-wetherbeei_contig11340:455..2170+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11340.2.1 ID=mRNA_P-wetherbeei_contig11340.2.1|Name=mRNA_P-wetherbeei_contig11340.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1716bp|location=Sequence derived from alignment at P-wetherbeei_contig11340:455..2170+ (Phaeothamnion wetherbeei SAG_119_79)
CGGCAGCGGTGGCGTCGGCGGCGGGCTCGCTGTGGAGGACCGACCGGCCT
GCGTCATCTGCCTCGACCACTTTCTCGACGACGAACAGGTTAAAGGGCCA
TGGCCGTTCTAGTTCATTTGGGTGGAGCGGTTTGATCTTCAAAATTTATA
TACGAAAACCAGCCTGACTGCGACGGATGGGATAAATTCAGATAGTTACT
TCTATCATTAAACGCAATCCAATGCCCCCTCTTCGTATTGCCATCTTCTC
ACCCGCCGGTTTTTCTCCGCTTCCTCAGCTGCGGAGCCTGCCGTGCGGCC
ATATCTTCCACCGCGGTTGCATCGATACGTGGTTACTCGGGGTCTTTAGT
GAGACGGGCTGCTGCACCAACTCATGCCCCGTCTGCAAAGCGCGGCCAGT
CACCACCACTGTCGGCGCTGGGGCCCATGGCGGCGGCAACGGCCGCGCCG
GCAGCGTCAGCGTCACCGAAAGCGGCGACAGCCAGAGCGGCGATGTGCAA
GTGTCCATCTCCGCGGAGGCCCGCACTTCGGCCGCTCCCAGCGATGCCTG
CATTTCCGAAAGCGGCGGCAGCAGCGGCGGCAGTGTTAGCGGCGGAACGA
CACGTTCTGGCATTCCAGCGTGGGCCTTTCTACAGGCCGGCAACCACCTC
GCCGCCAGGGATGGCGCCGGTGGCTCCCGCGCGCGCTACCGCAGCGTCAG
TGTCGGAAGCCGTACGCGCACCGCCGACGGGGGGCCTGACCGTCTCGGCG
TCAGCTGGAGCGCCGGCAGCAGCGGCGGCGGTGGCGCTCGTGCCGGCCAC
GATGACCACGACGACGACGACGATGATGCCGGCACGAACAACGACCGCGG
CGGCGGCAGACAAGCTGGCGCATCTAGCGGCAGGGGGCTGAACCTCTTTT
TCGGCGCCGGCTCCAGCGCCGCGCTGTTCCGGGCAGGGGGCGGCGGCGGG
GCAGGAGCTGGTGGCGGCACCGCACTCCGCATGGGGGAGAACAGCGCGCA
GAGTGGCAGTCCGAGCAGGCTCGGCGGCAGCGAGCACGGCCGCCGGATCT
CCTTCAACTCGTGCCCTGGCTCCACCGGACCGGCGCCACTGCCGCCGAGG
GACGAGGGCTGGGTGCAGCAGTAGCTGGGCCGTGGCAAAGTGATGGCAGC
GGCTGAGGCGGCGGTGGCGGCTGCCGTGGCAGTAGCGGCGGTGGCGGCTG
CCGTGGCAGTAGCGGCGGTGGCGGCTGCCGTGGCAGTAGCGGCGACAGCA
GCGGCGGCAAGTGGCGGTCTGTCCGCATCGCCGTCGGCAAGGCCGTCTCG
GGAGCGCCGAAGGCCCAACTTCTGCGGGGCGCTAGCTAGGTTAAAATTTG
CGAAGGAGCTGTCAATACGAGGGAGTGCTTTCGCTGCGGCGGCAAGTGAC
CGTAGCAGTTGTAGGTAACAATCGAAAGGTACCGGGATGGAGTGAATGGA
GGGAAGGAAGGGAAGGGAAGGGAACCTGGATTGCTTTTCCTTCCGAGGCA
CCCGTAAGAGGCCGGCCAGGTTCAGGGTCGGCCGACGATCCGGCGCCGGC
GTGGCCTGAACAGCTGCGACGGACGACAGCTACTACGGCGACAGGGATGG
TGGCGGCTACAGTTGCATCGCCGGCCGGTGGCAGCTGGAACGCGGCAGCG
GCGATTGGCGACAGCGGCGACATTCTGGCGCCGCTGCTCACCATGTACAA
AGAGAAGAGGGAGCGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig11340:455..2170+

>mRNA_P-wetherbeei_contig11340.2.1 ID=mRNA_P-wetherbeei_contig11340.2.1|Name=mRNA_P-wetherbeei_contig11340.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=903bp|location=Sequence derived from alignment at P-wetherbeei_contig11340:455..2170+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCCCTCTTCGTATTGCCATCTTCTCACCCGCCGGTTTTTCTCCGCT
TCCTCAGCTGCGGAGCCTGCCGTGCGGCCATATCTTCCACCGCGGTTGCA
TCGATACGTGGTTACTCGGGGTCTTTAGTGAGACGGGCTGCTGCACCAAC
TCATGCCCCGTCTGCAAAGCGCGGCCAGTCACCACCACTGTCGGCGCTGG
GGCCCATGGCGGCGGCAACGGCCGCGCCGGCAGCGTCAGCGTCACCGAAA
GCGGCGACAGCCAGAGCGGCGATGTGCAAGTGTCCATCTCCGCGGAGGCC
CGCACTTCGGCCGCTCCCAGCGATGCCTGCATTTCCGAAAGCGGCGGCAG
CAGCGGCGGCAGTGTTAGCGGCGGAACGACACGTTCTGGCATTCCAGCGT
GGGCCTTTCTACAGGCCGGCAACCACCTCGCCGCCAGGGATGGCGCCGGT
GGCTCCCGCGCGCGCTACCGCAGCGTCAGTGTCGGAAGCCGTACGCGCAC
CGCCGACGGGGGGCCTGACCGTCTCGGCGTCAGCTGGAGCGCCGGCAGCA
GCGGCGGCGGTGGCGCTCGTGCCGGCCACGATGACCACGACGACGACGAC
GATGATGCCGGCACGAACAACGACCGCGGCGGCGGCAGACAAGCTGGCGC
ATCTAGCGGCAGGGGGCTGAACCTCTTTTTCGGCGCCGGCTCCAGCGCCG
CGCTGTTCCGGGCAGGGGGCGGCGGCGGGGCAGGAGCTGGTGGCGGCACC
GCACTCCGCATGGGGGAGAACAGCGCGCAGAGTGGCAGTCCGAGCAGGCT
CGGCGGCAGCGAGCACGGCCGCCGGATCTCCTTCAACTCGTGCCCTGGCT
CCACCGGACCGGCGCCACTGCCGCCGAGGGACGAGGGCTGGGTGCAGCAG
TAG
back to top