mRNA_P-wetherbeei_contig1133.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1133.4.1
Unique NamemRNA_P-wetherbeei_contig1133.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1133.4.1 vs. uniprot
Match: A0A523YD71_9ARCH (RING-type domain-containing protein n=1 Tax=Methanomassiliicoccales archaeon TaxID=1906667 RepID=A0A523YD71_9ARCH)

HSP 1 Score: 77.8 bits (190), Expect = 1.820e-12
Identity = 62/192 (32.29%), Postives = 87/192 (45.31%), Query Frame = 1
Query:    1 LGGNAPSPGRCGHAAVSQGQQNMLIM-GGRAGNLVLEDQHSLNVERERWHTVALSTAATPFPRVYFRACALQGIEWATFLFGGTDGSAVLADIWRFMLSTDNTGTWRRLRPRGAAPCGRMNHAMAA-ADSRLFIHGGDADNETLLDDLWTFDPTATTWQQIEASDPGPRPPPRCSHCLAWLEEPGLLIVFGG 570
            + G    P R GH  V     N+ +M GGR G+ +  D        + W  V +    +P PR Y  A           LFGG DG+ VLAD + + +S +    W  + P G AP  R  H MA  ADS   I  G  D    L+D WT++ +   W ++  S+    P PR SH +A+    G  ++FGG
Sbjct:   74 MSGTFSPPPREGHRMVYDNTSNVFVMFGGRNGSQIFGDTWLYFDANDTW--VQVYPPGSPTPR-YGHAMVYDFFNDVVILFGGHDGTDVLADTYTYSVSGN---VWMNMNP-GNAPPKRQKHDMAYDADSHNVILFGGNDEINPLNDTWTYEVSLNDWIEMSPSN---SPSPRYSHSMAYDVAEGSTVLFGG 255          
BLAST of mRNA_P-wetherbeei_contig1133.4.1 vs. uniprot
Match: L8GKZ8_ACACA (Rab9 effector protein, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GKZ8_ACACA)

HSP 1 Score: 70.1 bits (170), Expect = 6.360e-10
Identity = 49/161 (30.43%), Postives = 77/161 (47.83%), Query Frame = 1
Query:    7 GNAPSPGRCGHAAVSQGQQNMLIMGGRAGNLVLEDQHSLNVERERWHTVALSTAATPFPRVYFRACALQGIEWATFLFGGTDGSA-VLADIWRFMLSTDNTGTWRRLRPRGAAPCGRMNHAMAAADSRLFIHGGDADNE--TLLDDLWTFDPTATTWQQIE 480
            G+AP+P R GH     G +  +  G  +  +   D          W  + +     P  R    A A+ G +   ++FGG D    +L D+  ++L T     W ++  RG AP GRM+HA++A  +RLF+HGG   N+  T   DL  FD    TW++++
Sbjct:   88 GSAPAP-RWGHTLSPVGNRLYMFGGALSPTICTNDLFLFETGTTLWRELRVK-GDCPARRTG-HAAAVVGTK--VYIFGGKDQQGRLLNDL--YILHTSGPARWEQVTGRGVAPAGRMDHALSAVGTRLFVHGGVVINDPATRASDLHVFDIVTQTWREVD 241          
BLAST of mRNA_P-wetherbeei_contig1133.4.1 vs. uniprot
Match: A0A535Q4J3_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535Q4J3_9CHLR)

HSP 1 Score: 69.3 bits (168), Expect = 9.580e-10
Identity = 47/140 (33.57%), Postives = 71/140 (50.71%), Query Frame = 1
Query:  166 AATPFPRVYFRACALQGIEWATFLFGGTDGSA--VLADIWRFMLSTDNTGTWRRLRPRGAAPCGRMNHAMAAADS---RLFIHGGDADNETLLDDLWTFDPTATTWQQIEASDPGPRPPPRCSHCLAWLEEPGLLIVFGG 570
            A +P  R Y+ A A         LFGG + +     AD W +   TD    W ++RP+ + P     +++ A DS   R+ + GG    ET  DDLW +D    TW +++ +  GPRP  R  H +A+  E G+L++FGG
Sbjct:  339 ALSPSARSYY-AMAYDAKADRLVLFGGENANHGDYFADTWAYSFGTDR---WTQMRPKESPP--PRYYSVMAYDSVRDRMLLFGGANLAETPFDDLWAYDLGRDTWSELKPT--GPRPTARAWHAMAFDNEAGVLVLFGG 470          
BLAST of mRNA_P-wetherbeei_contig1133.4.1 vs. uniprot
Match: C3XRQ0_BRAFL (Uncharacterized protein n=3 Tax=Branchiostoma TaxID=7737 RepID=C3XRQ0_BRAFL)

HSP 1 Score: 69.3 bits (168), Expect = 1.400e-9
Identity = 36/113 (31.86%), Postives = 58/113 (51.33%), Query Frame = 1
Query:  232 FLFGGTDGSAVLADIWRFMLSTDNTGTWRRLRPRGAAPCGRMNHAMAAADSRLFIHGGDADNETLLDDLWTFDPTATTWQQIEASDPGPRPPPRCSHCLAWLEEPGLLIVFGG 570
            ++FGG   + VL D+ R+         W  +      P GR +H +   +  L + GG+  N +L+ DLW++D T+ TWQ++  +DP  RPP    H  + ++    L VFGG
Sbjct:  194 WIFGGYTLNDVLDDLMRYNFEDSR---WENMTTTTPRPAGRHSHTLTTVNDSLVLFGGELANSSLIGDLWSYDTTSNTWQELAVNDPN-RPPAVAGHATSLVDN-RYLYVFGG 301          
BLAST of mRNA_P-wetherbeei_contig1133.4.1 vs. uniprot
Match: A0A6P4ZN34_BRABE (LOW QUALITY PROTEIN: multiple epidermal growth factor-like domains protein 8 n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4ZN34_BRABE)

HSP 1 Score: 69.3 bits (168), Expect = 1.400e-9
Identity = 44/149 (29.53%), Postives = 66/149 (44.30%), Query Frame = 1
Query:  124 NVERERWHTVALSTAATPFPRVYFRACALQGIEWATFLFGGTDGSAVLADIWRFMLSTDNTGTWRRLRPRGAAPCGRMNHAMAAADSRLFIHGGDADNETLLDDLWTFDPTATTWQQIEASDPGPRPPPRCSHCLAWLEEPGLLIVFGG 570
            N  R  W+   LS + T        A A      + ++FGG   + VL D+ R+         W  +      P GR +H +   +  L + GG+  N  L  DLW++D T  TWQ++  +DP  RPP    H  + ++    L VFGG
Sbjct:  223 NAGRSTWYQ--LSHSGTGLTARASHAGAYHAGSDSLWIFGGYTLNNVLDDLMRYNFEESR---WENMTTTTPRPAGRHSHTLTTVNDSLVLFGGELGNSRLAGDLWSYDTTTDTWQELAVNDPN-RPPAVAGHATSLVDN-RYLYVFGG 364          
BLAST of mRNA_P-wetherbeei_contig1133.4.1 vs. uniprot
Match: A0A8H4VV27_9AGAR (Uncharacterized protein n=1 Tax=Agrocybe pediades TaxID=84607 RepID=A0A8H4VV27_9AGAR)

HSP 1 Score: 63.9 bits (154), Expect = 5.070e-8
Identity = 46/173 (26.59%), Postives = 71/173 (41.04%), Query Frame = 1
Query:  304 TGTWRRLRPRGAAPCGRMNHAMAAADSRLFIHGGDADNETLLDDLWTFD----PTATTWQQIEASDPGPRPPPRCSHCLAWLEEPGLLIVFGGLMAAETAYSAVDSGXXXXXXADSWAPTNDLWTLSMDAESGSSDSAWRHIVFDSIGPSPRSLSAVAVRPGSGIMFLFGGHG 810
            T  W  L+     P GR  H +    S+L++ GG   N+   +D+W FD     T  TW          RPPPR +H     E+  ++ V   ++   +    + S        D     ND W+ +++         W  ++     P+PR   A AV    GIM++FGG G
Sbjct:  148 TREWTLLKVSSPTPRGRYGHTLTLIGSKLYVFGGQV-NQEFFNDIWLFDLNSLKTMPTWDNSHEPATSVRPPPRTTHSSVAFEDQIIMQVPPQIIHKYSHLFLISS----FGGTDGKYHYNDTWSFNVNTR------VWTELICAGYIPAPRESHAAAVV--DGIMYVFGGRG 307          
BLAST of mRNA_P-wetherbeei_contig1133.4.1 vs. uniprot
Match: A0A838RC22_9CHLR (Uncharacterized protein n=1 Tax=Ardenticatenales bacterium TaxID=2614248 RepID=A0A838RC22_9CHLR)

HSP 1 Score: 63.9 bits (154), Expect = 7.170e-8
Identity = 60/193 (31.09%), Postives = 78/193 (40.41%), Query Frame = 1
Query:  235 LFGGTDGSAVLADIWRFMLSTDNTGTWRRLRPRGAAPCGRMNHAMAAADS---RLFIHGGDADNETLLDDLWTFDPTATTWQQIEASDPGPRPPPRCSHCLAWLEEPGLLIVFGGLMAAETAYSAVDSGXXXXXXADSWAPTNDLWTLSMDAESGSSDSAWRHIVFDSIGPSPRSLSAVAVRPGSGIMFLFGG 804
            LFGG  GS    D W F L T +   W+ L    A         +A  DS   RL I  G A + ++ DD+W+FD T  TWQQIEAS  G  P PR        +    L +  G   A+T Y                   ND W   ++  S      W ++  +   P  R L   A+  G G + LFGG
Sbjct:  441 LFGGRSGSTAFNDTWAFDLKTQS---WQLLGSSEAPRPPARFSMVAGVDSMRERLIITTGQAADGSVFDDVWSFDLTNDTWQQIEAS--GEAPAPRYGAAGGIFDYSDALYLTHGF--ADTRY-------------------NDTWAFDLERNS------WSNVTPEGDLPLNRCLHGAAMT-GPGSLALFGG 600          
BLAST of mRNA_P-wetherbeei_contig1133.4.1 vs. uniprot
Match: A0A2P6V2H3_9CHLO (Nitrile-specifier 5-like n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V2H3_9CHLO)

HSP 1 Score: 63.2 bits (152), Expect = 8.520e-8
Identity = 46/127 (36.22%), Postives = 62/127 (48.82%), Query Frame = 1
Query:  205 ALQGIEWATFLFGGTDGSAVL--ADIWRFMLSTDNTGTWRRLRPRGAAPCGRMNHAMAAADSRLFIHGGDAD---NETLLDDLWTFDPTATTWQQIEASDPGPRPPPRCSHCLAWLEEPGLLIVFGG 570
            +L  I    +L+GG     V    D++ + L+     TWR++  +G  P  R  HA AA  S L+I GG +     E  L+DLW FD TA TWQQ+  +   P P  R  H L      G L +FGG
Sbjct:   20 SLTAIGDTLYLWGGEHAPRVPLGGDLYAYSLAQQ---TWRKVAVQGEPPSLRNAHAAAALGSDLYIFGGRSGIDIGEGSLNDLWRFDTTAATWQQVHPAAGSPLPLRRSYHRLE--AAGGKLYMFGG 141          
BLAST of mRNA_P-wetherbeei_contig1133.4.1 vs. uniprot
Match: A0A455BN80_PHYMC (rab9 effector protein with kelch motifs isoform X2 n=10 Tax=Laurasiatheria TaxID=314145 RepID=A0A455BN80_PHYMC)

HSP 1 Score: 62.0 bits (149), Expect = 1.800e-7
Identity = 40/124 (32.26%), Postives = 61/124 (49.19%), Query Frame = 1
Query:   67 MLIMGGRAGNLVLEDQHSLNVERERWHTVALSTAATPFPRVYFRACALQGIEWATFLFGGTDGSAVLADIWRFMLSTDNTGTWRRLRPRGAAPCGRMNHAMAAADSRLFIHGGDADNETLLDDL 438
            + I+GG   N    D H++++E   W T+   T+  P PR +  + A  G +   ++FGG +  A      +  +   NT TW +    G  P  R  H M AA ++LFIHGG A+ +   DDL
Sbjct:   50 VFIVGGADPNRSFSDVHTIDLETRTW-TMPKVTSPPPSPRTFHTSSATIGNQ--LYVFGGGERGAQPVQDVKLHVFDANTLTWSQPETLGKPPSPRHGHVMVAAGTKLFIHGGLAE-DNFYDDL 169          
BLAST of mRNA_P-wetherbeei_contig1133.4.1 vs. uniprot
Match: A0A6P8YDI9_THRPL (rab9 effector protein with kelch motifs-like n=1 Tax=Thrips palmi TaxID=161013 RepID=A0A6P8YDI9_THRPL)

HSP 1 Score: 60.5 bits (145), Expect = 7.860e-7
Identity = 56/189 (29.63%), Postives = 84/189 (44.44%), Query Frame = 1
Query:    7 GNAPSPGRCGHAAVSQGQQNMLIMGG--RAGNLVLEDQ-HSLNVERERWHTVALSTAATPFPRVYFRACALQGIEWATFLFGGTDGSAVLADIW-----RFMLSTDNTGTWRRLRPRGAAPCGRMNHAMAAADSRLFIHGGDADNETLLDDLWTFDPTATTWQQIEASDPGPRPPPRCSHC--LAWLEE 543
            G+ P+P R  H   +  +  +++ GG  +A + V +   + L+     W TV  +    P PR   +   L G+    F  GG  G+   +D+      ++ L    TG        G+AP  R  H   A  + L+I GG   + TL DD+W FD T+ TWQ+I      PRP PR      L WL +
Sbjct:  180 GSVPAP-RTMHTTTADVEGELVLFGGGNQAASPVADPSVYKLDPVTCVWTTVD-TKGDPPAPR---QGHILVGVGAKLFCHGGMAGNKFFSDMHVLEDGKWTLVDAGTG-------EGSAPSARAGHGAVARGNLLYIFGGLGPHGTL-DDMWKFDCTSRTWQEIVFESDCPRPKPRLDFAMTLVWLPQ 355          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1133.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A523YD71_9ARCH1.820e-1232.29RING-type domain-containing protein n=1 Tax=Methan... [more]
L8GKZ8_ACACA6.360e-1030.43Rab9 effector protein, putative n=1 Tax=Acanthamoe... [more]
A0A535Q4J3_9CHLR9.580e-1033.57Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
C3XRQ0_BRAFL1.400e-931.86Uncharacterized protein n=3 Tax=Branchiostoma TaxI... [more]
A0A6P4ZN34_BRABE1.400e-929.53LOW QUALITY PROTEIN: multiple epidermal growth fac... [more]
A0A8H4VV27_9AGAR5.070e-826.59Uncharacterized protein n=1 Tax=Agrocybe pediades ... [more]
A0A838RC22_9CHLR7.170e-831.09Uncharacterized protein n=1 Tax=Ardenticatenales b... [more]
A0A2P6V2H3_9CHLO8.520e-836.22Nitrile-specifier 5-like n=1 Tax=Micractinium cond... [more]
A0A455BN80_PHYMC1.800e-732.26rab9 effector protein with kelch motifs isoform X2... [more]
A0A6P8YDI9_THRPL7.860e-729.63rab9 effector protein with kelch motifs-like n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1133contigP-wetherbeei_contig1133:6994..7803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G1R4
PFAMsKelch_3,Kelch_4,Kelch_5
Model size810
Max annot lvl2759|Eukaryota
KEGG koko:K14966
KEGG Pathwayko04212,ko05168,map04212,map05168
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.1e-33
EggNOG OGsKOG0379@1|root,KOG0379@2759|Eukaryota
Descriptionnitrile biosynthetic process
Cds size810
COG categoryP
BRITEko00000,ko00001,ko01009,ko03029,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185907.2157378-CDS-P-wetherbeei_contig1133:6993..78031683185907.2157378-CDS-P-wetherbeei_contig1133:6993..7803Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1133 6994..7803 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1133.4.1prot_P-wetherbeei_contig1133.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1133 6994..7803 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1133.4.1

>prot_P-wetherbeei_contig1133.4.1 ID=prot_P-wetherbeei_contig1133.4.1|Name=mRNA_P-wetherbeei_contig1133.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=270bp
LGGNAPSPGRCGHAAVSQGQQNMLIMGGRAGNLVLEDQHSLNVERERWHT
VALSTAATPFPRVYFRACALQGIEWATFLFGGTDGSAVLADIWRFMLSTD
NTGTWRRLRPRGAAPCGRMNHAMAAADSRLFIHGGDADNETLLDDLWTFD
PTATTWQQIEASDPGPRPPPRCSHCLAWLEEPGLLIVFGGLMAAETAYSA
VDSGGGGGGGADSWAPTNDLWTLSMDAESGSSDSAWRHIVFDSIGPSPRS
LSAVAVRPGSGIMFLFGGHG
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mRNA from alignment at P-wetherbeei_contig1133:6994..7803+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1133.4.1 ID=mRNA_P-wetherbeei_contig1133.4.1|Name=mRNA_P-wetherbeei_contig1133.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=810bp|location=Sequence derived from alignment at P-wetherbeei_contig1133:6994..7803+ (Phaeothamnion wetherbeei SAG_119_79)
TTAGGAGGAAATGCTCCTTCCCCAGGCCGCTGCGGGCATGCAGCAGTCTC GCAAGGTCAACAAAACATGCTCATCATGGGCGGGCGCGCTGGAAACCTGG TGCTGGAAGACCAGCACTCACTAAACGTTGAAAGGGAAAGATGGCATACC GTTGCCTTATCCACGGCTGCCACTCCGTTTCCCCGAGTCTACTTTCGCGC CTGCGCTTTGCAAGGCATCGAATGGGCGACCTTCCTCTTTGGCGGCACCG ATGGCAGCGCCGTCCTCGCGGACATCTGGCGCTTCATGCTGTCGACTGAC AACACCGGGACGTGGCGTCGCCTTCGACCGCGGGGCGCCGCTCCTTGCGG CCGCATGAATCACGCCATGGCCGCCGCCGATTCACGGCTGTTCATCCATG GTGGAGACGCTGACAATGAGACGCTCCTAGACGACCTCTGGACGTTCGAC CCCACAGCCACGACGTGGCAGCAAATCGAGGCGAGCGACCCCGGCCCGCG GCCGCCGCCCCGCTGCTCCCATTGCCTCGCCTGGCTGGAAGAGCCGGGGC TGCTTATCGTCTTTGGCGGTTTGATGGCCGCTGAAACTGCCTACAGCGCG GTTGACAGCGGCGGCGGCGGCGGCGGCGGCGCCGATTCGTGGGCCCCGAC CAACGACCTGTGGACGCTTTCCATGGACGCCGAAAGCGGCAGCTCCGACT CCGCCTGGAGGCACATCGTGTTTGATTCGATCGGGCCGTCCCCGCGGAGC CTCTCGGCGGTGGCGGTCCGGCCCGGATCTGGCATCATGTTCCTCTTTGG TGGCCATGGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1133:6994..7803+

>mRNA_P-wetherbeei_contig1133.4.1 ID=mRNA_P-wetherbeei_contig1133.4.1|Name=mRNA_P-wetherbeei_contig1133.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=810bp|location=Sequence derived from alignment at P-wetherbeei_contig1133:6994..7803+ (Phaeothamnion wetherbeei SAG_119_79)
TTAGGAGGAAATGCTCCTTCCCCAGGCCGCTGCGGGCATGCAGCAGTCTC
GCAAGGTCAACAAAACATGCTCATCATGGGCGGGCGCGCTGGAAACCTGG
TGCTGGAAGACCAGCACTCACTAAACGTTGAAAGGGAAAGATGGCATACC
GTTGCCTTATCCACGGCTGCCACTCCGTTTCCCCGAGTCTACTTTCGCGC
CTGCGCTTTGCAAGGCATCGAATGGGCGACCTTCCTCTTTGGCGGCACCG
ATGGCAGCGCCGTCCTCGCGGACATCTGGCGCTTCATGCTGTCGACTGAC
AACACCGGGACGTGGCGTCGCCTTCGACCGCGGGGCGCCGCTCCTTGCGG
CCGCATGAATCACGCCATGGCCGCCGCCGATTCACGGCTGTTCATCCATG
GTGGAGACGCTGACAATGAGACGCTCCTAGACGACCTCTGGACGTTCGAC
CCCACAGCCACGACGTGGCAGCAAATCGAGGCGAGCGACCCCGGCCCGCG
GCCGCCGCCCCGCTGCTCCCATTGCCTCGCCTGGCTGGAAGAGCCGGGGC
TGCTTATCGTCTTTGGCGGTTTGATGGCCGCTGAAACTGCCTACAGCGCG
GTTGACAGCGGCGGCGGCGGCGGCGGCGGCGCCGATTCGTGGGCCCCGAC
CAACGACCTGTGGACGCTTTCCATGGACGCCGAAAGCGGCAGCTCCGACT
CCGCCTGGAGGCACATCGTGTTTGATTCGATCGGGCCGTCCCCGCGGAGC
CTCTCGGCGGTGGCGGTCCGGCCCGGATCTGGCATCATGTTCCTCTTTGG
TGGCCATGGT
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