mRNA_P-wetherbeei_contig1133.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1133.1.1
Unique NamemRNA_P-wetherbeei_contig1133.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1133.1.1 vs. uniprot
Match: A0A835YM39_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM39_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 4.980e-5
Identity = 37/80 (46.25%), Postives = 45/80 (56.25%), Query Frame = 2 
Query:  497 TSGSAGLLPLNWVASSRRADLAVSLLSALIQQVGRPAAEEHLLGGMYKQKELQRLARCLGRQIYGGGRRYTNKELVTSVM 736
            T+ SAG LP           +A SLL A +   G  A E  L  G  KQ  LQ +AR L  QIYGGGRR+TN+EL +SV+
Sbjct:  249 TAASAGPLP--------DPAMARSLLRAAVDLRGFAATEASLASGHLKQTLLQGVARALSCQIYGGGRRFTNRELASSVL 320
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1133.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YM39_9STRA4.980e-546.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1133contigP-wetherbeei_contig1133:147..1299 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size815
Hectar predicted targeting categoryother localisation
Exons2
Cds size558
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185907.0349104-CDS-P-wetherbeei_contig1133:146..7011683185907.0349104-CDS-P-wetherbeei_contig1133:146..701Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1133 147..701 -
1683185907.0445943-CDS-P-wetherbeei_contig1133:1040..10431683185907.0445943-CDS-P-wetherbeei_contig1133:1040..1043Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1133 1041..1043 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185907.0558574-UTR-P-wetherbeei_contig1133:1043..12991683185907.0558574-UTR-P-wetherbeei_contig1133:1043..1299Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1133 1044..1299 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1133.1.1prot_P-wetherbeei_contig1133.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1133 147..1043 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1133.1.1

>prot_P-wetherbeei_contig1133.1.1 ID=prot_P-wetherbeei_contig1133.1.1|Name=mRNA_P-wetherbeei_contig1133.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=186bp
MNEIPEYAQGQPPFSDDDDDDEMPSAHKRARHGNAGGGASGEQGLMPNVN
HPEGMTPLADAAKAGNEVRVAELLRGGASVTSGSAGLLPLNWVASSRRAD
LAVSLLSALIQQVGRPAAEEHLLGGMYKQKELQRLARCLGRQIYGGGRRY
TNKELVTSVMDCVIDGTAPLPPPGPIGPQSPTADPA
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mRNA from alignment at P-wetherbeei_contig1133:147..1299-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1133.1.1 ID=mRNA_P-wetherbeei_contig1133.1.1|Name=mRNA_P-wetherbeei_contig1133.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1153bp|location=Sequence derived from alignment at P-wetherbeei_contig1133:147..1299- (Phaeothamnion wetherbeei SAG_119_79)
GGGAAAGAGATGTTGGAAAGCCGTGGAAAAAAAACAGAGAGCATCACAGC
TGCCACAAGGCAGGAGAGTTAAAGAGACGCCTGTGGGAAGCGCGAAGAGA
GCCTCGGGACGCACGCCGTGAGCCCAGCTTTATTCGGGCCGCGAAGACAA
AGGGAAAAGGGAAAAGGAAAGAGGAAAACGAAGAAGAGGAGAAGAGAAGA
CAAAAGCTGAACATCGGCGCCATCAGGAGCGAGCTCACTGGCAAGCCGTC
TGCGTTATGGTGAGTACCGCTGGCGGATTGGTCACATTTTGGATAGGAGG
CCTTGGGAAACGACGCATCGCGTTGCCAATCCGCGTGGTTCCCTTGCTAT
TTCGACGCTACGACGAGTTGAGCGCTTCAGTGTCGCTGTTGCGCATTACT
GCGGAAGGGTTGGATCCAGAGCATGATCCAAAGGCGCGCTCCTTTCAAAA
ATGGTTTTGAAGCAACACTGCATTTTCAGCTACCGCAAAGTTCGTTGAGC
TTTACCAGAAAGTGTGCCTGGTAGATTGGAGCCGGCGGCCCACCTGAACT
TTGCATGCTGCCGCTCTTTTCTGGCCCTTTCCTCCAACCCCAATCCAGAA
CGAGATTCCAGAATACGCGCAAGGGCAGCCGCCGTTCAGCGACGATGATG
ACGACGACGAAATGCCGTCGGCCCATAAGCGTGCCCGCCACGGCAACGCG
GGCGGCGGCGCGTCCGGCGAGCAGGGCCTGATGCCCAACGTCAATCACCC
CGAAGGCATGACCCCACTAGCGGACGCCGCCAAGGCCGGCAACGAGGTCC
GCGTCGCCGAGCTGCTCCGCGGCGGCGCCAGCGTCACGTCCGGTTCGGCC
GGGCTGCTGCCGCTCAATTGGGTCGCCAGCTCGCGCCGTGCCGACCTCGC
CGTTAGCCTCCTGTCGGCGCTCATCCAGCAGGTCGGGCGACCGGCGGCGG
AGGAGCACCTGCTGGGCGGAATGTACAAGCAGAAGGAGCTGCAGCGGCTG
GCGCGCTGCCTCGGCCGGCAGATCTACGGCGGCGGCCGTCGCTACACAAA
CAAGGAGCTCGTCACCAGCGTCATGGACTGCGTCATCGACGGCACGGCAC
CGCTGCCGCCGCCGGGCCCCATCGGCCCGCAGAGCCCCACCGCCGACCCC
GCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1133:147..1299-

>mRNA_P-wetherbeei_contig1133.1.1 ID=mRNA_P-wetherbeei_contig1133.1.1|Name=mRNA_P-wetherbeei_contig1133.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=558bp|location=Sequence derived from alignment at P-wetherbeei_contig1133:147..1299- (Phaeothamnion wetherbeei SAG_119_79)
ATGAACGAGATTCCAGAATACGCGCAAGGGCAGCCGCCGTTCAGCGACGA
TGATGACGACGACGAAATGCCGTCGGCCCATAAGCGTGCCCGCCACGGCA
ACGCGGGCGGCGGCGCGTCCGGCGAGCAGGGCCTGATGCCCAACGTCAAT
CACCCCGAAGGCATGACCCCACTAGCGGACGCCGCCAAGGCCGGCAACGA
GGTCCGCGTCGCCGAGCTGCTCCGCGGCGGCGCCAGCGTCACGTCCGGTT
CGGCCGGGCTGCTGCCGCTCAATTGGGTCGCCAGCTCGCGCCGTGCCGAC
CTCGCCGTTAGCCTCCTGTCGGCGCTCATCCAGCAGGTCGGGCGACCGGC
GGCGGAGGAGCACCTGCTGGGCGGAATGTACAAGCAGAAGGAGCTGCAGC
GGCTGGCGCGCTGCCTCGGCCGGCAGATCTACGGCGGCGGCCGTCGCTAC
ACAAACAAGGAGCTCGTCACCAGCGTCATGGACTGCGTCATCGACGGCAC
GGCACCGCTGCCGCCGCCGGGCCCCATCGGCCCGCAGAGCCCCACCGCCG
ACCCCGCC
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