mRNA_P-wetherbeei_contig11327.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11327.1.1
Unique NamemRNA_P-wetherbeei_contig11327.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11327.1.1 vs. uniprot
Match: A0A7S2IDW2_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IDW2_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 4.670e-6
Identity = 69/173 (39.88%), Postives = 72/173 (41.62%), Query Frame = 1 
Query:  196 PGAGDMEEEDPLRIRSPRMPGRAAPGGDFRGDLMPGGGAFPDLYGG--GGMGGGXXXXXXXXXXXXXXXXXXXLMGPNHPMF---------------------GGGPSGAGFAPQPRFDPYGPPMSGQPFGPGGVLFQPGGXXXXXXXXXXGGGRGRGHPPFGEPNPDHLRPP 645
            P  G   E  P RI     P     GGDF GDL PGG   P   GG  G +GGG                   LMGP HP F                     GGGP   G   +PRFDP  PP  G P  P G      G  XXXXXXXXGG RG      G+PNPDH RPP
Sbjct:  220 PRVGRYNERQPPRIEDFDNPAPYQGGGDFAGDLAPGGIRDPRFGGGLPGSLGGGN------------------LMGPTHPSFRDAGGPNYYDDGGLDFESNVPGGGPGLGGLGMRPRFDPVYPP--GGPADPNGGRGL--GGRXXXXXXXXGGRRGN----LGDPNPDHQRPP 366
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11327.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S2IDW2_9STRA4.670e-639.88Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11327contigP-wetherbeei_contig11327:1125..1769 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2850.Phatr45352
Model size645
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.06e-07
EggNOG OGs2E9FZ@1|root,2SFU0@2759|Eukaryota,2XD3Q@2836|Bacillariophyta
Cds size645
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185906.9625337-CDS-P-wetherbeei_contig11327:1124..17691683185906.9625337-CDS-P-wetherbeei_contig11327:1124..1769Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11327 1125..1769 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11327.1.1prot_P-wetherbeei_contig11327.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11327 1125..1769 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11327.1.1

>prot_P-wetherbeei_contig11327.1.1 ID=prot_P-wetherbeei_contig11327.1.1|Name=mRNA_P-wetherbeei_contig11327.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=215bp
MLLVSLSRSNSVGCPQPIFEQVEKEVLSKAAKLPPPPPQQQQQQGERPQQ
PQQPPQSPSSLPPPHPGAGDMEEEDPLRIRSPRMPGRAAPGGDFRGDLMP
GGGAFPDLYGGGGMGGGGMGGTGGTGMGGMGGGGGGLMGPNHPMFGGGPS
GAGFAPQPRFDPYGPPMSGQPFGPGGVLFQPGGPGGPGGLPGQGGGRGRG
HPPFGEPNPDHLRPP
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mRNA from alignment at P-wetherbeei_contig11327:1125..1769+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11327.1.1 ID=mRNA_P-wetherbeei_contig11327.1.1|Name=mRNA_P-wetherbeei_contig11327.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=645bp|location=Sequence derived from alignment at P-wetherbeei_contig11327:1125..1769+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTGCTTGTCTCTTTGTCTCGCTCCAACTCCGTCGGCTGCCCGCAGCC
CATCTTCGAGCAAGTGGAAAAGGAAGTTCTCTCAAAGGCGGCGAAACTGC
CGCCGCCGCCGCCGCAGCAGCAGCAGCAGCAGGGAGAGCGACCGCAGCAG
CCGCAGCAGCCGCCGCAGTCGCCGTCGTCGCTGCCGCCGCCGCACCCGGG
CGCCGGCGACATGGAGGAAGAGGACCCGCTTAGGATCCGCTCGCCCCGCA
TGCCCGGCCGCGCCGCGCCCGGTGGCGACTTCCGCGGGGACCTGATGCCT
GGCGGCGGCGCCTTTCCGGACCTGTACGGCGGCGGCGGCATGGGCGGCGG
TGGTATGGGCGGCACGGGCGGCACGGGCATGGGCGGCATGGGCGGCGGCG
GCGGCGGCCTCATGGGCCCGAATCACCCCATGTTCGGCGGCGGTCCGTCG
GGCGCCGGCTTTGCGCCGCAGCCGCGCTTCGACCCGTACGGGCCTCCGAT
GTCGGGCCAGCCGTTTGGTCCCGGCGGTGTCCTGTTCCAGCCCGGTGGCC
CCGGCGGTCCCGGCGGGCTGCCGGGGCAGGGCGGGGGCCGGGGGCGGGGC
CACCCGCCGTTCGGGGAGCCTAACCCGGACCACCTCCGCCCGCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11327:1125..1769+

>mRNA_P-wetherbeei_contig11327.1.1 ID=mRNA_P-wetherbeei_contig11327.1.1|Name=mRNA_P-wetherbeei_contig11327.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=645bp|location=Sequence derived from alignment at P-wetherbeei_contig11327:1125..1769+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTGCTTGTCTCTTTGTCTCGCTCCAACTCCGTCGGCTGCCCGCAGCC
CATCTTCGAGCAAGTGGAAAAGGAAGTTCTCTCAAAGGCGGCGAAACTGC
CGCCGCCGCCGCCGCAGCAGCAGCAGCAGCAGGGAGAGCGACCGCAGCAG
CCGCAGCAGCCGCCGCAGTCGCCGTCGTCGCTGCCGCCGCCGCACCCGGG
CGCCGGCGACATGGAGGAAGAGGACCCGCTTAGGATCCGCTCGCCCCGCA
TGCCCGGCCGCGCCGCGCCCGGTGGCGACTTCCGCGGGGACCTGATGCCT
GGCGGCGGCGCCTTTCCGGACCTGTACGGCGGCGGCGGCATGGGCGGCGG
TGGTATGGGCGGCACGGGCGGCACGGGCATGGGCGGCATGGGCGGCGGCG
GCGGCGGCCTCATGGGCCCGAATCACCCCATGTTCGGCGGCGGTCCGTCG
GGCGCCGGCTTTGCGCCGCAGCCGCGCTTCGACCCGTACGGGCCTCCGAT
GTCGGGCCAGCCGTTTGGTCCCGGCGGTGTCCTGTTCCAGCCCGGTGGCC
CCGGCGGTCCCGGCGGGCTGCCGGGGCAGGGCGGGGGCCGGGGGCGGGGC
CACCCGCCGTTCGGGGAGCCTAACCCGGACCACCTCCGCCCGCCG
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