mRNA_P-wetherbeei_contig1132.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1132.6.1
Unique NamemRNA_P-wetherbeei_contig1132.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig1132.6.1 vs. uniprot
Match: H3ARE9_LATCH (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=H3ARE9_LATCH)

HSP 1 Score: 267 bits (683), Expect = 5.590e-89
Identity = 123/160 (76.88%), Postives = 140/160 (87.50%), Query Frame = 1 
Query:   31 QVFFDIDIGDQDAGRVTFELRADVVPKTAENFRALCTGEKGKGYKGSKFHRIIPSFMCQGGDFTKGNGTGGESIYGRTFPDENFTLKHEGSGILSMANAGPGTNGSQFFICTAETRWLDGKHVVFGKVSDGMDIIKKMEAVGSQNGKTSKEVKIRDCGEL 510
            QV+FD+ + DQ  GRVTFEL ADVVPKTAENFRALCTGEKG GYKGS FHR+IP FMCQGGDFT  NGTGG+SIYG TFPDENFTLKH G G+LSMANAGP TNGSQFFICTA+T WLDG+HVVFG V DGMD++KK+E++GSQ+GK SK++ I DCG+L
Sbjct:   41 QVYFDVAVVDQPLGRVTFELNADVVPKTAENFRALCTGEKGFGYKGSIFHRVIPKFMCQGGDFTNYNGTGGKSIYGPTFPDENFTLKHTGPGVLSMANAGPNTNGSQFFICTAKTEWLDGRHVVFGHVKDGMDVVKKVESLGSQSGKPSKKIVITDCGQL 200
[Close]
BLAST of mRNA_P-wetherbeei_contig1132.6.1 vs. uniprot
Match: UPI00187C30F9 (peptidyl-prolyl cis-trans isomerase-like n=3 Tax=Acanthopagrus latus TaxID=8177 RepID=UPI00187C30F9)

HSP 1 Score: 265 bits (676), Expect = 1.850e-88
Identity = 124/164 (75.61%), Postives = 140/164 (85.37%), Query Frame = 1 
Query:   19 VRLVQVFFDIDIGDQDAGRVTFELRADVVPKTAENFRALCTGEKGKGYKGSKFHRIIPSFMCQGGDFTKGNGTGGESIYGRTFPDENFTLKHEGSGILSMANAGPGTNGSQFFICTAETRWLDGKHVVFGKVSDGMDIIKKMEAVGSQNGKTSKEVKIRDCGEL 510
            + L +VFFD+ IG   AGR+  ELRADVVPKTAENFRALCTGEKG GYKGS FHR+IP FMCQGGDFT  NGTGG+SIYG  F DENF LKH G+GILSMANAG  TNGSQFF+CTAET WLDGKHVVFGKV +GMD++KK+EAVGS++GKTSK+V I DCG+L
Sbjct:    1 MALPRVFFDVTIGGASAGRIVMELRADVVPKTAENFRALCTGEKGFGYKGSSFHRVIPDFMCQGGDFTNHNGTGGKSIYGEKFADENFQLKHTGAGILSMANAGKNTNGSQFFLCTAETAWLDGKHVVFGKVVEGMDVVKKVEAVGSRDGKTSKKVVIADCGQL 164
[Close]
BLAST of mRNA_P-wetherbeei_contig1132.6.1 vs. uniprot
Match: UPI001F03DD6C (peptidyl-prolyl cis-trans isomerase-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F03DD6C)

HSP 1 Score: 265 bits (677), Expect = 2.240e-88
Identity = 122/164 (74.39%), Postives = 140/164 (85.37%), Query Frame = 1 
Query:   19 VRLVQVFFDIDIGDQDAGRVTFELRADVVPKTAENFRALCTGEKGKGYKGSKFHRIIPSFMCQGGDFTKGNGTGGESIYGRTFPDENFTLKHEGSGILSMANAGPGTNGSQFFICTAETRWLDGKHVVFGKVSDGMDIIKKMEAVGSQNGKTSKEVKIRDCGEL 510
            + L +V+FD+ +G + AGR+  ELRADVVPKTAENFRALCTGEKG GYKGSKFHR+IP FMCQGGDFT+GNGTGG+SIYG  F DENFTLKH G+GILSMANAGPGTNGSQFFICT +T WLDGKHVVFG V +G D++  +E VGSQ GKTSK+V I DCG+L
Sbjct:   17 MALPKVYFDMSVGGKPAGRIVMELRADVVPKTAENFRALCTGEKGFGYKGSKFHRVIPGFMCQGGDFTRGNGTGGKSIYGEKFADENFTLKHTGAGILSMANAGPGTNGSQFFICTVKTYWLDGKHVVFGSVVEGTDVVSAIEKVGSQGGKTSKDVVISDCGQL 180
[Close]
BLAST of mRNA_P-wetherbeei_contig1132.6.1 vs. uniprot
Match: A0A3M6TC95_POCDA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6TC95_POCDA)

HSP 1 Score: 264 bits (675), Expect = 2.720e-88
Identity = 124/160 (77.50%), Postives = 137/160 (85.62%), Query Frame = 1 
Query:   31 QVFFDIDIGDQDAGRVTFELRADVVPKTAENFRALCTGEKGKGYKGSKFHRIIPSFMCQGGDFTKGNGTGGESIYGRTFPDENFTLKHEGSGILSMANAGPGTNGSQFFICTAETRWLDGKHVVFGKVSDGMDIIKKMEAVGSQNGKTSKEVKIRDCGEL 510
            +VFFDI IG   AGRV  ELR D VPKTAENFRALCTGEKG GYKGSKFHRIIP FMCQGGDFT GNGTGG+SIYG  F DENF+LKH G+GILSMANAG  TNGSQFFICTA+T WLDGKHVVFG V +GMD+++KMEA+GSQ+GKT+K V I DCG+L
Sbjct:    5 RVFFDITIGGSSAGRVVMELRNDAVPKTAENFRALCTGEKGFGYKGSKFHRIIPGFMCQGGDFTNGNGTGGKSIYGEKFADENFSLKHTGAGILSMANAGANTNGSQFFICTAKTTWLDGKHVVFGSVVEGMDVVRKMEAIGSQSGKTAKPVAISDCGQL 164
[Close]
BLAST of mRNA_P-wetherbeei_contig1132.6.1 vs. uniprot
Match: D3PJC2_LEPSM (Peptidyl-prolyl cis-trans isomerase n=3 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=D3PJC2_LEPSM)

HSP 1 Score: 264 bits (675), Expect = 8.620e-88
Identity = 122/163 (74.85%), Postives = 141/163 (86.50%), Query Frame = 1 
Query:   22 RLVQVFFDIDIGDQDAGRVTFELRADVVPKTAENFRALCTGEKGKGYKGSKFHRIIPSFMCQGGDFTKGNGTGGESIYGRTFPDENFTLKHEGSGILSMANAGPGTNGSQFFICTAETRWLDGKHVVFGKVSDGMDIIKKMEAVGSQNGKTSKEVKIRDCGEL 510
            +L QVFFDIDIG ++ GR+ FELR+DVVPKTA+NFRALCTGEKG G+K S FHRIIP FMCQGGDFT  NGTGG+SIYG  FPDENF LKH G GILSMANAGP TNGSQFFICTA+T WL+G HVVFG V +G+DI+KKME+VGS+NG+ SK+V I+DCGE+
Sbjct:   36 KLPQVFFDIDIGGKNEGRIVFELRSDVVPKTADNFRALCTGEKGYGFKNSSFHRIIPGFMCQGGDFTNHNGTGGKSIYGEKFPDENFDLKHTGPGILSMANAGPNTNGSQFFICTAKTDWLNGAHVVFGSVVEGLDIVKKMESVGSRNGRASKQVTIQDCGEV 198
[Close]
BLAST of mRNA_P-wetherbeei_contig1132.6.1 vs. uniprot
Match: A0A835YXI4_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXI4_9STRA)

HSP 1 Score: 264 bits (675), Expect = 1.480e-87
Identity = 124/159 (77.99%), Postives = 135/159 (84.91%), Query Frame = 1 
Query:   31 QVFFDIDIGDQDAGRVTFELRADVVPKTAENFRALCTGEKGKGYKGSKFHRIIPSFMCQGGDFTKGNGTGGESIYGRTFPDENFTLKHEGSGILSMANAGPGTNGSQFFICTAETRWLDGKHVVFGKVSDGMDIIKKMEAVGSQNGKTSKEVKIRDCGE 507
            +VFFDIDI ++DAGR+ FELR DVVPKT ENFR LCT  KGKG+KGS FHRIIP FMCQGGDFTKGNGTGGESIYGRTFPDENF LKH G GILSMANAGP TNGSQFFICT  T WLD KHVVFG V +G D++KKME VGS +G+T+K V IRDCGE
Sbjct:   56 KVFFDIDIDNKDAGRIVFELRKDVVPKTVENFRELCTRPKGKGFKGSSFHRIIPQFMCQGGDFTKGNGTGGESIYGRTFPDENFQLKHTGGGILSMANAGPDTNGSQFFICTVATPWLDNKHVVFGSVVEGGDVVKKMEGVGSPSGRTAKVVTIRDCGE 214
[Close]
BLAST of mRNA_P-wetherbeei_contig1132.6.1 vs. uniprot
Match: A0A2T7PZ24_POMCA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7PZ24_POMCA)

HSP 1 Score: 262 bits (669), Expect = 2.230e-87
Identity = 123/160 (76.88%), Postives = 138/160 (86.25%), Query Frame = 1 
Query:   31 QVFFDIDIGDQDAGRVTFELRADVVPKTAENFRALCTGEKGKGYKGSKFHRIIPSFMCQGGDFTKGNGTGGESIYGRTFPDENFTLKHEGSGILSMANAGPGTNGSQFFICTAETRWLDGKHVVFGKVSDGMDIIKKMEAVGSQNGKTSKEVKIRDCGEL 510
            +V+FDI IG++ AGR+  ELRADVVPKTAENFRALCTGEKG G+KGSKFHRIIP FMCQGGDFT GNGTGG+SIYG  F DENF LKH G G+LSMANAGP TNGSQFFICT ET WLDGKHVVFG V +G++ +KKMEAVGSQ+GKTSK+V I DCG +
Sbjct:    6 RVYFDIKIGEKPAGRIIMELRADVVPKTAENFRALCTGEKGFGFKGSKFHRIIPDFMCQGGDFTHGNGTGGKSIYGEKFADENFKLKHTGFGVLSMANAGPNTNGSQFFICTNETTWLDGKHVVFGSVVEGLETVKKMEAVGSQSGKTSKDVIIADCGTV 165
[Close]
BLAST of mRNA_P-wetherbeei_contig1132.6.1 vs. uniprot
Match: A0A6P8HHY2_ACTTE (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HHY2_ACTTE)

HSP 1 Score: 261 bits (667), Expect = 4.350e-87
Identity = 122/162 (75.31%), Postives = 137/162 (84.57%), Query Frame = 1 
Query:   25 LVQVFFDIDIGDQDAGRVTFELRADVVPKTAENFRALCTGEKGKGYKGSKFHRIIPSFMCQGGDFTKGNGTGGESIYGRTFPDENFTLKHEGSGILSMANAGPGTNGSQFFICTAETRWLDGKHVVFGKVSDGMDIIKKMEAVGSQNGKTSKEVKIRDCGEL 510
            L +V+FDI  G Q  GR+  ELR+DVVPKTAENFRALCTGEKG GYKGS FHR+IP FMCQGGDFT+GNGTGG+SIYG  F DENF LKH   GILSMANAGP TNGSQFFICTA+T WLDGKHVVFG V +GMD++K++E VGSQ+GKTSK+V I DCGEL
Sbjct:    3 LPRVYFDISAGGQXLGRIVMELRSDVVPKTAENFRALCTGEKGFGYKGSVFHRVIPGFMCQGGDFTRGNGTGGKSIYGEKFADENFQLKHTDKGILSMANAGPNTNGSQFFICTAKTSWLDGKHVVFGSVVEGMDVVKEIEKVGSQSGKTSKKVTIEDCGEL 164
[Close]
BLAST of mRNA_P-wetherbeei_contig1132.6.1 vs. uniprot
Match: F2U0F9_SALR5 (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U0F9_SALR5)

HSP 1 Score: 261 bits (667), Expect = 4.350e-87
Identity = 122/160 (76.25%), Postives = 135/160 (84.38%), Query Frame = 1 
Query:   31 QVFFDIDIGDQDAGRVTFELRADVVPKTAENFRALCTGEKGKGYKGSKFHRIIPSFMCQGGDFTKGNGTGGESIYGRTFPDENFTLKHEGSGILSMANAGPGTNGSQFFICTAETRWLDGKHVVFGKVSDGMDIIKKMEAVGSQNGKTSKEVKIRDCGEL 510
            +V+FD+       GRV FELR DVVPKTAENFRALCTGEKG G+KGS FHRIIP FMCQGGDFT+GNGTGG+SIYG  F DENFTLKH G GILSMANAGP TNGSQFFICT +T WLDGKHVVFG V DGMD+++KMEA+GSQ+GKTSK V I DCG+L
Sbjct:    5 KVYFDVTANGSPVGRVVFELRDDVVPKTAENFRALCTGEKGFGFKGSSFHRIIPGFMCQGGDFTRGNGTGGKSIYGEKFADENFTLKHTGPGILSMANAGPNTNGSQFFICTEKTGWLDGKHVVFGSVVDGMDVVRKMEALGSQSGKTSKTVTIADCGQL 164
[Close]
BLAST of mRNA_P-wetherbeei_contig1132.6.1 vs. uniprot
Match: A0A7S3LEC0_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LEC0_9STRA)

HSP 1 Score: 262 bits (670), Expect = 4.970e-87
Identity = 120/160 (75.00%), Postives = 138/160 (86.25%), Query Frame = 1 
Query:   31 QVFFDIDIGDQDAGRVTFELRADVVPKTAENFRALCTGEKGKGYKGSKFHRIIPSFMCQGGDFTKGNGTGGESIYGRTFPDENFTLKHEGSGILSMANAGPGTNGSQFFICTAETRWLDGKHVVFGKVSDGMDIIKKMEAVGSQNGKTSKEVKIRDCGEL 510
            +VFFD+++G +D GR+ FELRADVVPKTAENFR LCTGE G GYKGS FHR+IP FMCQGGDFT  NGTGG+SIYG  F DENF LKH G GILSMANAGPGTNGSQFFICT +T WLDG+HVVFGKV+DG+D++ K+EAVGSQ+G TSK V ++DCGEL
Sbjct:   40 KVFFDMEVGGEDIGRIEFELRADVVPKTAENFRQLCTGEAGFGYKGSPFHRVIPQFMCQGGDFTNRNGTGGKSIYGAKFEDENFELKHVGKGILSMANAGPGTNGSQFFICTVDTPWLDGRHVVFGKVTDGLDVVDKIEAVGSQSGATSKTVIVKDCGEL 199
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1132.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H3ARE9_LATCH5.590e-8976.88Peptidyl-prolyl cis-trans isomerase n=1 Tax=Latime... [more]
UPI00187C30F91.850e-8875.61peptidyl-prolyl cis-trans isomerase-like n=3 Tax=A... [more]
UPI001F03DD6C2.240e-8874.39peptidyl-prolyl cis-trans isomerase-like n=1 Tax=X... [more]
A0A3M6TC95_POCDA2.720e-8877.50Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pocill... [more]
D3PJC2_LEPSM8.620e-8874.85Peptidyl-prolyl cis-trans isomerase n=3 Tax=Lepeop... [more]
A0A835YXI4_9STRA1.480e-8777.99Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribon... [more]
A0A2T7PZ24_POMCA2.230e-8776.88Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pomace... [more]
A0A6P8HHY2_ACTTE4.350e-8775.31Peptidyl-prolyl cis-trans isomerase n=1 Tax=Actini... [more]
F2U0F9_SALR54.350e-8776.25Peptidyl-prolyl cis-trans isomerase n=1 Tax=Salpin... [more]
A0A7S3LEC0_9STRA4.970e-8775.00Peptidyl-prolyl cis-trans isomerase n=1 Tax=Amphor... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1132contigP-wetherbeei_contig1132:4234..6121 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog7897.ENSLACP00000012220
Preferred namePPIF
PFAMsPro_isomerase
Model size519
Max annot lvl33208|Metazoa
KEGG koko:K09565
KEGG Pathwayko04020,ko04022,ko05012,ko05016,ko05145,map04020,map04022,map05012,map05016,map05145
Hectar predicted targeting categoryother localisation
GOsGO:0000302,GO:0000413,GO:0002082,GO:0002931,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005757,GO:0005759,GO:0006140,GO:0006464,GO:0006807,GO:0006810,GO:0006839,GO:0006915,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007006,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0008637,GO:0009636,GO:0009892,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010035,GO:0010038,GO:0010155,GO:0010563,GO:0010638,GO:0010639,GO:0010646,GO:0010647,GO:0010648,GO:0010821,GO:0010822,GO:0010823,GO:0010849,GO:0010939,GO:0010941,GO:0010942,GO:0012501,GO:0016018,GO:0016020,GO:0016021,GO:0016043,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019866,GO:0022898,GO:0023051,GO:0023056,GO:0023057,GO:0031090,GO:0031224,GO:0031323,GO:0031324,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032409,GO:0032410,GO:0032412,GO:0032780,GO:0032879,GO:0032991,GO:0033043,GO:0033218,GO:0033554,GO:0034599,GO:0034614,GO:0034762,GO:0034763,GO:0034765,GO:0034766,GO:0035690,GO:0035794,GO:0036211,GO:0042221,GO:0042277,GO:0042325,GO:0042326,GO:0042493,GO:0042542,GO:0042981,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043269,GO:0043271,GO:0043412,GO:0043462,GO:0043467,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045934,GO:0045936,GO:0045980,GO:0046677,GO:0046685,GO:0046902,GO:0046930,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051049,GO:0051051,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051234,GO:0051336,GO:0051346,GO:0051592,GO:0051716,GO:0060548,GO:0061024,GO:0062012,GO:0062014,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070265,GO:0070266,GO:0070301,GO:0070887,GO:0071236,GO:0071241,GO:0071243,GO:0071248,GO:0071277,GO:0071704,GO:0071840,GO:0080090,GO:0090199,GO:0090200,GO:0090201,GO:0090324,GO:0090559,GO:0097237,GO:0097300,GO:0098796,GO:0098798,GO:0140096,GO:1900542,GO:1900543,GO:1901564,GO:1901700,GO:1901701,GO:1902445,GO:1902531,GO:1902532,GO:1902686,GO:1903578,GO:1903579,GO:1904062,GO:1904063,GO:1905710,GO:2000275,GO:2000276,GO:2001233,GO:2001234,GO:2001235,GO:2001242,GO:2001243
Exons7
Evalue9.16e-90
EggNOG OGsCOG0652@1|root,KOG0865@2759|Eukaryota,38FFS@33154|Opisthokonta,3B9YC@33208|Metazoa,3D1XY@33213|Bilateria,480P6@7711|Chordata,48VFZ@7742|Vertebrata
Ec32 ortholog descriptionCyclophilin-like domain
Ec32 orthologEc-03_003770.1
EC5.2.1.8
Descriptionregulation of proton-transporting ATPase activity, rotational mechanism
Cds size519
COG categoryO
BRITEko00000,ko00001,ko01000,ko03110
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1132.6.1prot_P-wetherbeei_contig1132.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1132 4234..6121 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185906.7314568-CDS-P-wetherbeei_contig1132:4233..42691683185906.7314568-CDS-P-wetherbeei_contig1132:4233..4269Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1132 4234..4269 -
1683185906.7407737-CDS-P-wetherbeei_contig1132:4487..45731683185906.7407737-CDS-P-wetherbeei_contig1132:4487..4573Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1132 4488..4573 -
1683185906.7522485-CDS-P-wetherbeei_contig1132:5025..50941683185906.7522485-CDS-P-wetherbeei_contig1132:5025..5094Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1132 5026..5094 -
1683185906.7595742-CDS-P-wetherbeei_contig1132:5300..54211683185906.7595742-CDS-P-wetherbeei_contig1132:5300..5421Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1132 5301..5421 -
1683185906.7672827-CDS-P-wetherbeei_contig1132:5593..56651683185906.7672827-CDS-P-wetherbeei_contig1132:5593..5665Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1132 5594..5665 -
1683185906.7772841-CDS-P-wetherbeei_contig1132:5811..58441683185906.7772841-CDS-P-wetherbeei_contig1132:5811..5844Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1132 5812..5844 -
1683185906.787048-CDS-P-wetherbeei_contig1132:6019..61211683185906.787048-CDS-P-wetherbeei_contig1132:6019..6121Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1132 6020..6121 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1132.6.1

>prot_P-wetherbeei_contig1132.6.1 ID=prot_P-wetherbeei_contig1132.6.1|Name=mRNA_P-wetherbeei_contig1132.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=173bp
MIAPFFVRLVQVFFDIDIGDQDAGRVTFELRADVVPKTAENFRALCTGEK
GKGYKGSKFHRIIPSFMCQGGDFTKGNGTGGESIYGRTFPDENFTLKHEG
SGILSMANAGPGTNGSQFFICTAETRWLDGKHVVFGKVSDGMDIIKKMEA
VGSQNGKTSKEVKIRDCGELKA*
back to top

mRNA from alignment at P-wetherbeei_contig1132:4234..6121-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1132.6.1 ID=mRNA_P-wetherbeei_contig1132.6.1|Name=mRNA_P-wetherbeei_contig1132.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1888bp|location=Sequence derived from alignment at P-wetherbeei_contig1132:4234..6121- (Phaeothamnion wetherbeei SAG_119_79)
ATGATTGCGCCTTTTTTTGTGCGATTGGTGCAGGTCTTCTTCGACATTGA
CATTGGGGACCAAGATGCCGGCCGCGTCACCTTTGAGCTCCGTGCGGACG
TGGTGAGTGCTCCAAGTAAATAGATGCCTAGCTATCCGTATCATGAGCCA
GAGCTGCCCCTTTTTCCCCCTTTTCGCTTCTTTCTGTAGTTCCTTTCTCC
CACCTATTCCCCACGACCCCTGTTGAGCTTTGTCGCATTCTCATTCGCTC
CCATTCTCCTGCGTTTGTACCCAGCAGGTGCCCAAGACGGCCGAGAACTT
CCGTGCGCTGGTAAGTGGGACAAGTCCTCCTGCTTCTGCCTCGATCCCGC
CGCAATCGCAATGTCAGGACGCTGTACCATTCTCACCGCCACCGCTGCCG
TTGTCGCTGTTCGTGCCGCGACCATCACGCTTCCACGCTTGTGTCTGCCT
GCACAGTGCACGGGAGAGAAGGGCAAGGGCTACAAGGGCTCCAAGTTCCA
CCGCATTATTCCCTCCTTCATGTGCCAGGTAAGGTGTGTATTCGTAACGA
CGAGATTTAGCCTCTTTCATCATTTGCAGCATCTGGCGGACTGCCCATTT
CTCTCAGGTAAGCCGATATCGCCTTTGAAAGCTCCATGTTTTGGAATGCA
ACCACCCGAATGATTGCATGACGGTCCTTCGGTCTGCGCGGCGATGGCAG
GGCGGCGACTTCACCAAGGGCAACGGGACGGGCGGCGAGAGCATCTACGG
CCGGACGTTCCCAGATGAGAACTTCACACTGAAGCACGAGGGCTCCGGCA
TCCTCAGCATGGCCAACGCCGGTGAGAGGGACGGAACAGGCGGAGCAAGA
GTTGGTCACTTCTTTTTTGGTGAAATGTCCGTAAGGCCAGCCCGTTTAGC
GGTGGATATTTTGGATTACGGCTCTTTATGGCTGGGTCCAAACATGCACA
TTTTATACCAGAAGCAGGGTAGGACAGGTAGAAAATGAAGTCAATCCACG
AACCTCTTGGCGCCCCCGTTCCTACAGGACCCGGAACCAACGGCTCGCAG
TTCTTCATCTGCACGGCGGAGACCCGCTGGCTCGACGGGAAGCACGGTAC
ATTGCTGAGGGGACTTATGGGCTTTTGCGTGCTCTTTTGTTTTTTCTGTA
TTTACTGTCGAGCCGAGGAGCGCCTTCCTGCCTTCCTACGCGTCCACTTT
CCTCCCTGTTGTCCATCCTACCCTACATTTCTTTTCGACCTTGCGATGAA
ATTTTTCGCTTAAGCGCGATTCGAACCGGTTATTCCCCGATGATGAGGGT
GAGTTACGTCCAACTGCACCAACAGTCCACCTCCTCCTTTGTTTTCAGAC
GGGAAGGCCAATATTTTCTGCGTTGGTTGCATGGTGTGCAGCGGAAGGAC
GGGAAAGAGGAAGCGCAACTTTCGTTGAAGGTGCCAATGCTGCTTCCGCT
TTTATTTTGCTGAAGAACAGACAGAACACCACGAAAGCCAACGTCTTCCG
CATCTCTGTCTCTCTCCTTCTCTCTCCTCCCCCGTTCTGAATCCGCAGTG
GTCTTTGGCAAGGTGTCAGATGGGATGGACATCATCAAAAAGATGGAGGC
AGTTGGCAGTCAGAACGGCAAGACCTCCAAGGAGGTGAGCACTGTTGTAG
CATGTGTCAGCGCCCCCGCAGGTTTTTCTCGCGGATTCGTTGCGCCTTTG
CTGCATGTTCCATTTCTCTCCTGTTGATGCACGTCCAGGAATGCGTGTGG
ATAATATTCCCAGCAGGTTAAATCTCTGATAATTTCCTGTCCTGCACACT
TGCGCCGCCTTTTTCTTTTTGGGCACCGCACTCCCACTCCGATGACGGGC
AGGTCAAGATTCGCGACTGCGGCGAGCTCAAGGCGTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1132:4234..6121-

>mRNA_P-wetherbeei_contig1132.6.1 ID=mRNA_P-wetherbeei_contig1132.6.1|Name=mRNA_P-wetherbeei_contig1132.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig1132:4234..6121- (Phaeothamnion wetherbeei SAG_119_79)
ATGATTGCGCCTTTTTTTGTGCGATTGGTGCAGGTCTTCTTCGACATTGA
CATTGGGGACCAAGATGCCGGCCGCGTCACCTTTGAGCTCCGTGCGGACG
TGGTGCCCAAGACGGCCGAGAACTTCCGTGCGCTGTGCACGGGAGAGAAG
GGCAAGGGCTACAAGGGCTCCAAGTTCCACCGCATTATTCCCTCCTTCAT
GTGCCAGGGCGGCGACTTCACCAAGGGCAACGGGACGGGCGGCGAGAGCA
TCTACGGCCGGACGTTCCCAGATGAGAACTTCACACTGAAGCACGAGGGC
TCCGGCATCCTCAGCATGGCCAACGCCGGACCCGGAACCAACGGCTCGCA
GTTCTTCATCTGCACGGCGGAGACCCGCTGGCTCGACGGGAAGCACGTGG
TCTTTGGCAAGGTGTCAGATGGGATGGACATCATCAAAAAGATGGAGGCA
GTTGGCAGTCAGAACGGCAAGACCTCCAAGGAGGTCAAGATTCGCGACTG
CGGCGAGCTCAAGGCGTGA
back to top