mRNA_P-wetherbeei_contig1132.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1132.5.1
Unique NamemRNA_P-wetherbeei_contig1132.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1132.5.1 vs. uniprot
Match: A0A4D9D239_9STRA (FHA domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D239_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.630e-21
Identity = 63/170 (37.06%), Postives = 91/170 (53.53%), Query Frame = 1 
Query:    1 NDNMTVEELLHSHCDVLMRFIDAKAALHVSHLREELKNGVAGVGALMQPAHAFAPATKAKGMGSGANAATRGSDHK---------------MTVTVLNGPHKEAVFSLRPRAGEPA-PVGRSTGKRFKERGVSLPQDSEVSTTHGRFEALAGGGFCFTDTGSTNGSSVDG 462
            + + TVEE L  HC  L+  ++A A   + +L+ EL+ G A +  ++Q      P++ A   G+  + AT     +               + +TV++GP++  VF L    G     VGRSTGK+ KE G S+PQD EVST HGRFE  AGG   + D GSTNGS ++G
Sbjct:   28 SQDQTVEEYLKVHCSQLVGDLNAHAESLIKNLQHELERGKAEIMGMVQGNTVGPPSSDAGDSGASTSTATGSVPARSVAASTGPPGSTFLTVILTVIDGPYEGTVFRLVQSKGRKEFVVGRSTGKKVKEHGASMPQDPEVSTVHGRFECRAGGKVMYEDLGSTNGSFING 197
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BLAST of mRNA_P-wetherbeei_contig1132.5.1 vs. uniprot
Match: W7TNC7_9STRA (FHA domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TNC7_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.090e-19
Identity = 62/170 (36.47%), Postives = 88/170 (51.76%), Query Frame = 1 
Query:    1 NDNMTVEELLHSHCDVLMRFIDAKAALHVSHLREELKNGVAGVGALMQPAHAFAPATKAKGMGSGANAATRGSDHK---------------MTVTVLNGPHKEAVFSLRPRAGEPA-PVGRSTGKRFKERGVSLPQDSEVSTTHGRFEALAGGGFCFTDTGSTNGSSVDG 462
            + + TVEE L  HC  L+  ++A A   + +L+ EL+ G A +  ++Q       ++ A   G+  + AT     +               + +TV +GP+   VF L    G     VGRSTGK+ KE G S+PQD EVST HGRFE  AGG   + D GSTNGS ++G
Sbjct:   28 SQDQTVEEYLKVHCSQLVGDLNAHAESLIKNLQHELERGKAEIMGMVQGNTVGPTSSDAGDSGASTSTATGNVPARSVAASTGPPGSTFLTVILTVTDGPYAGTVFRLVQSKGRKEFVVGRSTGKKVKEHGASMPQDPEVSTVHGRFECRAGGKVMYEDLGSTNGSFING 197
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BLAST of mRNA_P-wetherbeei_contig1132.5.1 vs. uniprot
Match: A0A7S4JX86_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JX86_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 8.790e-19
Identity = 44/80 (55.00%), Postives = 59/80 (73.75%), Query Frame = 1 
Query:  211 RGSDHKMTVTVLNGPHKEAVFSLRPRAGEPAPVGRSTGKRFKERGVSLPQDSEVSTTHGRFEALAGGGFCFTDTGSTNGS 450
            +GS   + V+V+ GP++   F+L+PR   P  VGRS GK+F+ERG+SL +DSEVSTTHG+FE  +G  F F DTGSTNG+
Sbjct:  124 KGSVKTIHVSVIGGPYEGKTFNLKPRPRSPCYVGRSAGKKFRERGMSLQKDSEVSTTHGKFEVKSGKAF-FVDTGSTNGT 202
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BLAST of mRNA_P-wetherbeei_contig1132.5.1 vs. uniprot
Match: A0A7S2EPN0_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EPN0_TRICV)

HSP 1 Score: 87.4 bits (215), Expect = 2.980e-18
Identity = 42/72 (58.33%), Postives = 55/72 (76.39%), Query Frame = 1 
Query:  235 VTVLNGPHKEAVFSLRPRAGEPAPVGRSTGKRFKERGVSLPQDSEVSTTHGRFEALAGGGFCFTDTGSTNGS 450
            V VL GP++ + + L+PRA  P  VGRS GK+F++RG+SLP+D EVSTTHG+FE  AG  + F DTGSTNG+
Sbjct:  125 VKVLGGPYEGSSYELKPRARTPCFVGRSAGKKFRDRGISLPKDGEVSTTHGKFEIKAGKAY-FVDTGSTNGT 195
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BLAST of mRNA_P-wetherbeei_contig1132.5.1 vs. uniprot
Match: A0A7S1DB27_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DB27_CYCTE)

HSP 1 Score: 83.6 bits (205), Expect = 5.860e-18
Identity = 41/72 (56.94%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:  235 VTVLNGPHKEAVFSLRPRAGEPAPVGRSTGKRFKERGVSLPQDSEVSTTHGRFEALAGGGFCFTDTGSTNGS 450
            + V  GPHK     LRP+   P  VGRS GK+F+ERGVSL +D+EVSTTHGR E + G  + FTD GSTNG+
Sbjct:    8 IDVTEGPHKGKSLELRPKPNTPCMVGRSAGKKFRERGVSLAKDTEVSTTHGRIEIICGCAY-FTDLGSTNGT 78
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BLAST of mRNA_P-wetherbeei_contig1132.5.1 vs. uniprot
Match: A0A1Z5K9F5_FISSO (FHA domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K9F5_FISSO)

HSP 1 Score: 81.3 bits (199), Expect = 3.110e-16
Identity = 52/152 (34.21%), Postives = 83/152 (54.61%), Query Frame = 1 
Query:   13 TVEELLHSHCDVLMRFIDAKAALHVSHLREELKNGVAGVGA----LMQPAHAFAPATKAKGMGSGANAATRGSDHKMTVTVLNGPHKEAVFSLRPRAGEPAPVGRSTGKRFKERGVSLPQDSEVSTTHGRFEALAGGGFCFTDTGSTNGSSV 456
            TVEE L+      +   D KA + +  LR+EL++GV  + +    +M+      P  + K          +G+   + + +++G H  + F + P+  +P  +GRS GK+FK+ GVSL  D EVSTTHG+F  +  G F F DTGS+NG+ +
Sbjct:   17 TVEEALNFVLQQALAKTDKKAEMALKVLRQELEDGVRELYSCHEQMMENCENSKPLAEDK----------KGAKDMLKIDIISGEHAGSTFFVTPKPNKPCLLGRSKGKKFKQNGVSLCHDLEVSTTHGKF-TVENGTFYFIDTGSSNGTLI 157
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BLAST of mRNA_P-wetherbeei_contig1132.5.1 vs. uniprot
Match: A0A448Z5U9_9STRA (FHA domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z5U9_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 8.760e-16
Identity = 38/76 (50.00%), Postives = 57/76 (75.00%), Query Frame = 1 
Query:  235 VTVLNGPHKEAVFSLRPRAGEPAPVGRSTGKRFKERGVSLPQDSEVSTTHGRFEALAGGGFCFTDTGSTNGSSVDG 462
            + ++ GP++ A + L+P++   A +GRS+  +FKERG+SLPQD EVST+HGRFE + GG F +TD  STNG+ ++G
Sbjct:  161 IDIIAGPYEGAFYDLQPKSRSHAWIGRSSSAKFKERGISLPQDLEVSTSHGRFE-VKGGKFYYTDVASTNGTRLNG 235
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BLAST of mRNA_P-wetherbeei_contig1132.5.1 vs. uniprot
Match: A0A7R9WG63_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WG63_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 2.110e-15
Identity = 44/85 (51.76%), Postives = 58/85 (68.24%), Query Frame = 1 
Query:  196 ANAATRGSDHKMTVTVLNGPHKEAVFSLRPRAGEPAPVGRSTGKRFKERGVSLPQDSEVSTTHGRFEALAGGGFCFTDTGSTNGS 450
            A A  R +  ++ V V+ G +K   + L+PR   P  VGRS GK+F++RG+SL +DSEVSTTHG+FE  AG  F F DTGSTNG+
Sbjct:  196 AAAKKRSAVKQIYVDVIGGSYKGKKYVLKPRPRAPCFVGRSAGKKFRDRGMSLAKDSEVSTTHGKFEIKAGKAF-FVDTGSTNGT 279
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BLAST of mRNA_P-wetherbeei_contig1132.5.1 vs. uniprot
Match: A0A6V2EN90_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2EN90_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 2.700e-15
Identity = 38/76 (50.00%), Postives = 52/76 (68.42%), Query Frame = 1 
Query:  235 VTVLNGPHKEAVFSLRPRAGEPAPVGRSTGKRFKERGVSLPQDSEVSTTHGRFEALAGGGFCFTDTGSTNGSSVDG 462
            V ++ GP+    + L+P+   P  +GRS+GK+F+ERG+SLP D EVST+HG+FE      F F DTGSTNGS  +G
Sbjct:  126 VEIITGPYNGNTYDLKPKIRGPCFIGRSSGKKFRERGISLPDDPEVSTSHGKFEVKKKK-FYFVDTGSTNGSICEG 200
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BLAST of mRNA_P-wetherbeei_contig1132.5.1 vs. uniprot
Match: A0A7S0XL44_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0XL44_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.890e-15
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:  205 ATRGSDHKMTVTVLNGPHKEAVFSLRPRAGEPAPVGRSTGKRFKERGVSLPQDSEVSTTHGRFEALAGGGFCFTDTGSTNGSSVDG 462
            AT      + + V++GP+K   + L+P+   P  +GRS+  +FK+RG+SLP D EVSTTHG+FE    G F +TD GSTNG+ ++G
Sbjct:  166 ATDSKPDTIHIDVVDGPYKGQFYDLQPKTRSPCWIGRSSSAKFKDRGISLPVDLEVSTTHGKFE-FKHGKFYYTDAGSTNGTRING 250
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1132.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4D9D239_9STRA1.630e-2137.06FHA domain-containing protein n=1 Tax=Nannochlorop... [more]
W7TNC7_9STRA1.090e-1936.47FHA domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A7S4JX86_9STRA8.790e-1955.00Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2EPN0_TRICV2.980e-1858.33Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S1DB27_CYCTE5.860e-1856.94Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A1Z5K9F5_FISSO3.110e-1634.21FHA domain-containing protein n=2 Tax=Fistulifera ... [more]
A0A448Z5U9_9STRA8.760e-1650.00FHA domain-containing protein n=1 Tax=Pseudo-nitzs... [more]
A0A7R9WG63_9STRA2.110e-1551.76Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A6V2EN90_9STRA2.700e-1550.00Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
A0A7S0XL44_9STRA2.890e-1545.35Hypothetical protein n=2 Tax=Pseudo-nitzschia deli... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1132contigP-wetherbeei_contig1132:3114..3578 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2850.Phatr45323
PFAMsFHA
Model size465
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.79e-16
EggNOG OGs2E05Y@1|root,2S7MG@2759|Eukaryota,2XDX1@2836|Bacillariophyta
Ec32 ortholog descriptionForkhead-associated (FHA) domain
Ec32 orthologEc-02_005410.1
DescriptionFHA domain
Cds size456
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185906.689654-UTR-P-wetherbeei_contig1132:3113..31221683185906.689654-UTR-P-wetherbeei_contig1132:3113..3122Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1132 3114..3122 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185906.7009754-CDS-P-wetherbeei_contig1132:3122..35781683185906.7009754-CDS-P-wetherbeei_contig1132:3122..3578Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1132 3123..3578 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1132.5.1prot_P-wetherbeei_contig1132.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1132 3123..3578 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1132.5.1

>prot_P-wetherbeei_contig1132.5.1 ID=prot_P-wetherbeei_contig1132.5.1|Name=mRNA_P-wetherbeei_contig1132.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=152bp
MTVEELLHSHCDVLMRFIDAKAALHVSHLREELKNGVAGVGALMQPAHAF
APATKAKGMGSGANAATRGSDHKMTVTVLNGPHKEAVFSLRPRAGEPAPV
GRSTGKRFKERGVSLPQDSEVSTTHGRFEALAGGGFCFTDTGSTNGSSVD
G*
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mRNA from alignment at P-wetherbeei_contig1132:3114..3578+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1132.5.1 ID=mRNA_P-wetherbeei_contig1132.5.1|Name=mRNA_P-wetherbeei_contig1132.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=465bp|location=Sequence derived from alignment at P-wetherbeei_contig1132:3114..3578+ (Phaeothamnion wetherbeei SAG_119_79)
AACGACAACATGACGGTGGAGGAGCTCTTGCATAGCCATTGCGACGTGCT
GATGCGATTCATCGACGCGAAGGCGGCGCTTCACGTCTCGCACCTCCGCG
AGGAGCTGAAGAACGGTGTCGCCGGCGTGGGGGCTTTGATGCAGCCAGCT
CACGCCTTCGCTCCCGCAACCAAGGCGAAAGGAATGGGCAGTGGCGCCAA
CGCTGCGACGAGGGGTTCGGATCACAAGATGACCGTCACGGTCTTAAACG
GCCCGCACAAGGAGGCGGTGTTCTCGCTGCGCCCGAGAGCCGGAGAGCCG
GCGCCGGTGGGGAGATCAACCGGGAAGCGGTTCAAGGAGCGCGGCGTGAG
CTTGCCACAGGACAGCGAGGTCTCCACGACCCACGGCCGCTTCGAGGCGC
TCGCTGGGGGTGGCTTCTGCTTCACCGACACCGGGAGCACCAACGGCAGC
AGCGTGGACGGGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1132:3114..3578+

>mRNA_P-wetherbeei_contig1132.5.1 ID=mRNA_P-wetherbeei_contig1132.5.1|Name=mRNA_P-wetherbeei_contig1132.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=456bp|location=Sequence derived from alignment at P-wetherbeei_contig1132:3114..3578+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGGTGGAGGAGCTCTTGCATAGCCATTGCGACGTGCTGATGCGATT
CATCGACGCGAAGGCGGCGCTTCACGTCTCGCACCTCCGCGAGGAGCTGA
AGAACGGTGTCGCCGGCGTGGGGGCTTTGATGCAGCCAGCTCACGCCTTC
GCTCCCGCAACCAAGGCGAAAGGAATGGGCAGTGGCGCCAACGCTGCGAC
GAGGGGTTCGGATCACAAGATGACCGTCACGGTCTTAAACGGCCCGCACA
AGGAGGCGGTGTTCTCGCTGCGCCCGAGAGCCGGAGAGCCGGCGCCGGTG
GGGAGATCAACCGGGAAGCGGTTCAAGGAGCGCGGCGTGAGCTTGCCACA
GGACAGCGAGGTCTCCACGACCCACGGCCGCTTCGAGGCGCTCGCTGGGG
GTGGCTTCTGCTTCACCGACACCGGGAGCACCAACGGCAGCAGCGTGGAC
GGGTGA
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