mRNA_P-wetherbeei_contig1132.3.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1132.3.2
Unique NamemRNA_P-wetherbeei_contig1132.3.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1132.3.2 vs. uniprot
Match: D8LJA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJA9_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 4.020e-40
Identity = 102/277 (36.82%), Postives = 132/277 (47.65%), Query Frame = 1
Query:    1 MSASLTVGSALIAFGPPAALXXXXXXXXXXXXXXXXXXXXXWLVSALLASLLWTAFPVAREQWLLVIIGGVSLQEFTRIGFVRLYKRAEKVILDAT----------------------------------------PTHQQMSSAMLVELNDVTSSIAAGVGWGTMHGAIFFGTVLAENRGPGAAYSEACPRVPLVLFSSWVALLFIALDVALSGLMFSSVGGGAGSSSDPSGVAGVFVLHFAASLPTLLHEIPGGCAASLPLMIGVVAAAYVALWR 711
            M   L  G +LIAFGP   L                     WL S   AS+LWT  P A++ WLL +I GV L  F R+   ++Y + E VI +A                                         P   + SS +L  LN V+SSIAAGVGWG +H  I  GT L+++ GPGAA+S +CP VP V+ S+  A  F+ LD+ L    F+     A  S D   ++  F LHFAA+L T  + I GGC ASLPL+ GVVA A +AL R
Sbjct:    1 MGLVLVAGCSLIAFGPSIMLWVVVVGKRPALVIIGLVGAFFWLASMAAASVLWTIVPAAQDAWLLSMITGVVLHGFGRLALAKVYVKTEAVINEAAAHAAPASNAHGSSGRYGGALGAEGSGGVGEGRGERKTGDVPDQPEESSGLL-RLNGVSSSIAAGVGWGLIHAVIMVGTALSKHMGPGAAFSPSCPHVPSVIVSALSAQAFVVLDLLLMAAAFA-----AARSGDAGLMSFSFGLHFAAALTTGFNFIEGGCTASLPLLYGVVALAAIALTR 271          
BLAST of mRNA_P-wetherbeei_contig1132.3.2 vs. uniprot
Match: W7TG16_9STRA (Protein binding protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TG16_9STRA)

HSP 1 Score: 115 bits (287), Expect = 2.470e-27
Identity = 78/241 (32.37%), Postives = 121/241 (50.21%), Query Frame = 1
Query:    4 SASLTVGSALIAFGPPAALXXXXXXXXXXXXXXXXXXXXXWLVSALLASLLWTAFPVAREQWLLVIIGGVSLQEFTRIGFVRLYKRAEKVILDATPTHQQMSSAMLVELNDVTSSIAAGVGWGTMHGAIFFGTVLAE-NRGPGAAYSEACPRVPLVLFSSWVALLFIALDVALSGLMFSSVGGGAGSSSDPSGVAGVFVLHFAASLPTLLHEIPGGCAASLPLMIGVVAAAYVALWRRWRK 723
            +A L  G+ LI F P + +                     +LV+ LL+S LW  F   ++   ++++ GV  Q   R    RLY R E +I  A          + + LND+TSS+AAG G+G MH  + FG+VLA  N  PG  ++ +C R PLV+  + +AL F  +D++   L F  +           GV  +F++H AAS  T+L+++  GC  SLPL+  V+ A  +  +R WR+
Sbjct:    3 AAGLMWGAGLIVFSPISCVFILVVTRRPELVIIAISGAFAYLVALLLSSALWAMFGPVKQTAAIMVVLGVLCQVVMRAVLYRLYHRTEILIKSAN------HPVLHMPLNDITSSLAAGTGYGLMHAVMIFGSVLASGNSDPGVLFAPSCTRTPLVVVLALLALAFTMMDLSFMALTFLYL---RRRKCFRMGV--IFLMHSAASGLTILNDVENGCTMSLPLVYVVMVATVLVTFREWRQ 232          
BLAST of mRNA_P-wetherbeei_contig1132.3.2 vs. uniprot
Match: A0A3R7KS73_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A3R7KS73_9STRA)

HSP 1 Score: 106 bits (265), Expect = 5.320e-24
Identity = 74/243 (30.45%), Postives = 109/243 (44.86%), Query Frame = 1
Query:   13 LTVGSALIAFGPPAALXXXXXXXXXXXXXXXXXXXXXWLVSALLASLLWTAFPVAREQWLLVIIGGVSLQEFTRIGFVRLYKRAEKVILDATPTHQQMSSAMLVELNDVTSSIAAGVGWGTMHGAIFFGTVLAENRGP-GAAYSEACPRVPLVLFSSWVALLFIALDVALSGLMFSSVGGGAGSSSDPSGVAGVFVLHFAASLPTLLHEIPGGCAASLPLMIG----VVAAAYVALWRRWRKH 726
            L +G  L+ FGP A+L                     WLV+ L+ + LW   P  +      +  GV +QE  R+ F  LY R E  +   T +  Q+       LND+TSS+A GVG+  MH  + FG++   + G  GAA+S +C  +PL+  ++   L   ALDVAL  + F               V  VFV+H   +L  L +    GC  S+P+         A A   +WR W++H
Sbjct:   12 LLIGCILVGFGPLASLFFVVIAKRAQLVIIALSGAFTWLVAILVTATLWQIIPPLKTSLSATVPVGVVVQEGFRMLFFYLYTRTELAVKKVTTSSHQLP------LNDITSSLAGGVGFSVMHALMMFGSLAGSSTGSRGAAFSSSCESIPLIFSAAISTLALTALDVALMVVAFDGY-----RKRSALAVGAVFVIHMGVALSGLANMDTNGCYISIPVHYAGAALACAGAMTIVWR-WKRH 242          
BLAST of mRNA_P-wetherbeei_contig1132.3.2 vs. uniprot
Match: H3GHV0_PHYRM (Uncharacterized protein n=15 Tax=Phytophthora TaxID=4783 RepID=H3GHV0_PHYRM)

HSP 1 Score: 105 bits (263), Expect = 9.940e-24
Identity = 76/238 (31.93%), Postives = 106/238 (44.54%), Query Frame = 1
Query:   13 LTVGSALIAFGPPAALXXXXXXXXXXXXXXXXXXXXXWLVSALLASLLWTAFPVAREQWLLVIIGGVSLQEFTRIGFVRLYKRAEKVILDATPTHQQMSSAMLVELNDVTSSIAAGVGWGTMHGAIFFGTVLAENRGP-GAAYSEACPRVPLVLFSSWVALLFIALDVALSGLMFSSVGGGAGSSSDPSGVAGVFVLHFAASLPTLLHEIPGGCAASLPL-MIGVVAAAYVALWRRWR 720
            L  G  L+ FGP AAL                     WLV+ L+ + LW   P  +      +  GV +QE  R+ F  LY R E  +   T    Q+       LNDVTSS+A GVG+  MH  + FG+++  + G  GAA+S +C  +PLV  ++   L   ALDVAL  + F               V  VFV+H   +L  L +    GC  S+P+   G   A+  A+   WR
Sbjct:   12 LLFGCILVGFGPLAALFFVVVAKRAQLVILALSGAFVWLVAILVTASLWQIIPPLKTSLSATVPVGVVVQEAFRLLFFHLYTRTEAAVKKVTTASHQLP------LNDVTSSLAGGVGFSVMHALLMFGSLVGSSTGSRGAAFSASCESIPLVFSAAISTLALTALDVALMVVAFDGY-----RKRSAMAVGAVFVIHMGVALSALANMNTNGCYISIPVHYAGAALASAGAMTIVWR 238          
BLAST of mRNA_P-wetherbeei_contig1132.3.2 vs. uniprot
Match: A0A484DSN2_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DSN2_BRELC)

HSP 1 Score: 103 bits (258), Expect = 5.290e-23
Identity = 73/238 (30.67%), Postives = 107/238 (44.96%), Query Frame = 1
Query:   13 LTVGSALIAFGPPAALXXXXXXXXXXXXXXXXXXXXXWLVSALLASLLWTAFPVAREQWLLVIIGGVSLQEFTRIGFVRLYKRAEKVILDATPTHQQMSSAMLVELNDVTSSIAAGVGWGTMHGAIFFGTVLAENRG-PGAAYSEACPRVPLVLFSSWVALLFIALDVALSGLMFSSVGGGAGSSSDPSGVAGVFVLHFAASLPTLLHEIPGGCAASLPLMIGVVA----AAYVALWR 711
            L  G  L+ FGP AA+                     WL++ L+ + LW   P  +      +  GV +QE  R+ F  LY R E  +   T +  Q+       LNDVTSS+A GVG+  MH  + FG+++  + G  GAA+S +CP +PLV  ++   L   ALDV+L  L F               V+ V ++H   +L  L +    GC  S+P+     A     A + LWR
Sbjct:   12 LFFGCILVGFGPLAAVFFTIIAKRAQLVIISLSGAFVWLIAILVTATLWQIIPALKTSLSATVPVGVVVQEAFRVLFFYLYTRTELAVKRVTTSSHQLP------LNDVTSSLAGGVGFSLMHALLMFGSLMGSSTGLRGAAFSNSCPAIPLVFSAALSTLALTALDVSLMVLAFDGY-----RKRSALIVSAVIIIHMGIALSALANMDTNGCYISIPVHYAGAAIACTGASLILWR 238          
BLAST of mRNA_P-wetherbeei_contig1132.3.2 vs. uniprot
Match: A0A8K1C7Q9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C7Q9_PYTOL)

HSP 1 Score: 102 bits (255), Expect = 1.410e-22
Identity = 76/239 (31.80%), Postives = 111/239 (46.44%), Query Frame = 1
Query:   13 LTVGSALIAFGPPAALXXXXXXXXXXXXXXXXXXXXXWLVSALLASLLWTAFPVAREQWLLVIIGGVSLQEFTRIGFVRLYKRAEKVILDATP-THQQMSSAMLVELNDVTSSIAAGVGWGTMHGAIFFGTVLAENRGP-GAAYSEACPRVPLVLFSSWVALLFIALDVALSGLMFSSVGGGAGSSSDPSGVAGVFVLHFAASLPTLLHEIPGGCAASLPL-MIGV---VAAAYVALWR 711
            L  G  LIAFGP  AL                     WLVS L+++ LW   P  +      I+  V +QE  R  F   Y R E  +   T  THQ       + LND+TSS+A GVG+  MH  + +G+V+A + G  GAA+S +C  +PL+   ++  L    +DVAL  + F         + +   + GV VLH   +L  L ++   GC  ++P+  +G    VA A+  L R
Sbjct:   12 LFFGCILIAFGPLTALFFMVVSKRAQLTIIALSGAFVWLVSILISATLWMIIPPLKSSIEATIVISVIIQEVFRFVFFHFYTRTELAVQKVTTATHQ-------LPLNDITSSLAGGVGFSIMHSVMMYGSVVASSTGSRGAAFSPSCESIPLIFSGAFSTLALTIMDVALMIIAFHGY-----RNRNFVLIGGVGVLHLGVALSALANQNTNGCTIAIPIHYVGALLSVAGAWTILGR 238          
BLAST of mRNA_P-wetherbeei_contig1132.3.2 vs. uniprot
Match: A0A0P1A6Q5_PLAHL (Gammasecretase subunit aph n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A6Q5_PLAHL)

HSP 1 Score: 102 bits (255), Expect = 1.440e-22
Identity = 76/238 (31.93%), Postives = 108/238 (45.38%), Query Frame = 1
Query:   13 LTVGSALIAFGPPAALXXXXXXXXXXXXXXXXXXXXXWLVSALLASLLWTAFPVAREQWLLVIIGGVSLQEFTRIGFVRLYKRAEKVILDATPTHQQMSSAMLVELNDVTSSIAAGVGWGTMHGAIFFGTVLAENRGP-GAAYSEACPRVPLVLFSSWVALLFIALDVALSGLMFSSVGGGAGSSSDPSGVAGVFVLHFAASLPTLLHEIPGGCAASLPL-MIGVV---AAAYVALWR 711
            L  G  LI FGP AAL                     WLV+ L+ + LW   P  +      +  GV +QE  R+ F  LY R EK +   T +  Q+       LND+TSS+A GVG+  MH  + FG+++  + G  GAA+S +C  +PL+  ++   L   ALDVAL  + F               +  VF +H   +L  L +    GC  S+P+   G V   A A + LWR
Sbjct:   12 LFFGCILIGFGPLAALFFFVVAKRAQLVILALSAAFVWLVAILVTATLWHLIPPLKTSLSATVPVGVVVQEAFRMLFFYLYTRTEKAVKRVTTSSHQLP------LNDITSSLAGGVGFSAMHALLMFGSLVGSSTGSRGAAFSSSCESIPLIFSAALSTLALTALDVALMVVAFDGY-----RKRSVLIITVVFGIHMGVALSALANMDTNGCYISIPVHYAGAVLACAGAVMILWR 238          
BLAST of mRNA_P-wetherbeei_contig1132.3.2 vs. uniprot
Match: K3X4S5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X4S5_GLOUD)

HSP 1 Score: 101 bits (252), Expect = 3.840e-22
Identity = 71/240 (29.58%), Postives = 109/240 (45.42%), Query Frame = 1
Query:   13 LTVGSALIAFGPPAALXXXXXXXXXXXXXXXXXXXXXWLVSALLASLLWTAFPVAREQWLLVIIGGVSLQEFTRIGFVRLYKRAEKVILDATPTHQQMSSAMLVELNDVTSSIAAGVGWGTMHGAIFFGTVLAENRGP-GAAYSEACPRVPLVLFSSWVALLFIALDVALSGLMFSSVGGGAGSSSDPSGVAGVFVLHFAASLPTLLHEIPGGCAASLPLMIG---VVAAAYVALWRRWR 720
            L  G  L AFGP AAL                     WLV+ L+ + LW   P  ++     I  GV +QE  R  F  LY R E+ +      H+  +S     LND+TSS+A G+G+  MH  + +G+++  + G  GAA++++C  VPL+  ++   L    +DVAL  + F               +  VFV+H   +L  L ++   GCA ++PL      V   A   +  RW+
Sbjct:   12 LFFGCILTAFGPLAALFFVVVAKRAQLVIIALSGAFTWLVAILVTATLWRIIPPLKDSIEATIPVGVVIQEAFRYVFFVLYTRTERAV------HKVTTSPSQFPLNDITSSLAGGLGFSLMHALMMYGSLVGSSTGSRGAAFTKSCESVPLIFAAALSTLALTLMDVALMIVAFDGY-----RKKSFLAIGTVFVIHLGVALSALANQKTNGCAVAIPLHFAGALVATGAAATMISRWK 240          
BLAST of mRNA_P-wetherbeei_contig1132.3.2 vs. uniprot
Match: A0A2D4BUP9_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BUP9_PYTIN)

HSP 1 Score: 95.9 bits (237), Expect = 5.600e-20
Identity = 67/221 (30.32%), Postives = 101/221 (45.70%), Query Frame = 1
Query:   13 LTVGSALIAFGPPAALXXXXXXXXXXXXXXXXXXXXXWLVSALLASLLWTAFPVAREQWLLVIIGGVSLQEFTRIGFVRLYKRAEKVILDATP-THQQMSSAMLVELNDVTSSIAAGVGWGTMHGAIFFGTVLAENRGP-GAAYSEACPRVPLVLFSSWVALLFIALDVALSGLMFSSVGGGAGSSSDPSGVAGVFVLHFAASLPTLLHEIPGGCAASLPL 669
            L  G  L AFGP A+L                     WL+S L+ + +W   P  +      I   V LQE  R  F  +Y R E+ +   T  THQ       + LND+TSS+A GVG+  MH  + +G+V+A + G  GAA+S +C  +PL+L  +   L    +DVAL  + F           +   +  V ++H   +L  L ++   GC  S+P+
Sbjct:   12 LFFGCILTAFGPLASLFFVVIAKRAQLVILALSGAFLWLISILVTATIWRIIPPLKTSLEATIPLSVVLQEVFRYLFFVMYTRTEQAVQKVTTATHQ-------LPLNDITSSLAGGVGFSLMHSLMMYGSVVASSTGSRGAAFSSSCESIPLILSGALSTLALTVMDVALMVIAFQGY-----RKMNAMLIGLVALIHLGVALSALANKSTNGCMVSIPI 220          
BLAST of mRNA_P-wetherbeei_contig1132.3.2 vs. uniprot
Match: A0A3M6VQE8_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VQE8_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 4.160e-18
Identity = 65/220 (29.55%), Postives = 96/220 (43.64%), Query Frame = 1
Query:   13 LTVGSALIAFGPPAALXXXXXXXXXXXXXXXXXXXXXWLVSALLASLLWTAFPVAREQWLLVIIGGVSLQEFTRIGFVRLYKRAEKVILDATPTHQQMSSAMLVELNDVTSSIAAGVGWGTMHGAIFFGTVLAENRGP-GAAYSEACPRVPLVLFSSWVALLFIALDVALSGLMFSSVGGGAGSSSDPSGVAGVFVLHFAASLPTLLHEIPGGCAASLPL 669
            L  G  L+ FGP A+L                     WLV+ L+ + LW   P  +      I  GV +QE  R+ F  LY   E  +   T +  Q+       LND+TSS+A GVG+  MH  + FG++L  + G  GAAYS +C  +PL+  ++   L    +DV L  + F               +  VF +H   +L  L +    GC  S+P+
Sbjct:   12 LFFGCILLGFGPLASLFFIVVAKRAQLVIISLSGAFIWLVAILVTASLWHLIPPLKTSLAATIPLGVIVQEVFRLLFFYLYTHTELAVKRVTTSCHQLP------LNDITSSLAGGVGFALMHSLLMFGSLLGSSTGSRGAAYSTSCDNIPLIFSAAISTLALTIIDVGLMIIAFDGY-----RKRSVLLIGTVFGIHMGVALSALANLDTNGCFISIPV 220          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1132.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D8LJA9_ECTSI4.020e-4036.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7TG16_9STRA2.470e-2732.37Protein binding protein n=1 Tax=Nannochloropsis ga... [more]
A0A3R7KS73_9STRA5.320e-2430.45Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
H3GHV0_PHYRM9.940e-2431.93Uncharacterized protein n=15 Tax=Phytophthora TaxI... [more]
A0A484DSN2_BRELC5.290e-2330.67Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A8K1C7Q9_PYTOL1.410e-2231.80Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0P1A6Q5_PLAHL1.440e-2231.93Gammasecretase subunit aph n=1 Tax=Plasmopara hals... [more]
K3X4S5_GLOUD3.840e-2229.58Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A2D4BUP9_PYTIN5.600e-2030.32Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A3M6VQE8_9STRA4.160e-1829.55Uncharacterized protein n=1 Tax=Peronospora effusa... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1132contigP-wetherbeei_contig1132:1512..2697 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LJA9
PFAMsAph-1
Model size816
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons3
Evalue4.18e-41
EggNOG OGs2CYZB@1|root,2S7DU@2759|Eukaryota
DescriptionAph-1 protein
Cds size771
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185906.6451612-UTR-P-wetherbeei_contig1132:1511..15561683185906.6451612-UTR-P-wetherbeei_contig1132:1511..1556Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1132 1512..1556 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185906.653422-CDS-P-wetherbeei_contig1132:1556..19751683185906.653422-CDS-P-wetherbeei_contig1132:1556..1975Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1132 1557..1975 -
1683185906.6605241-CDS-P-wetherbeei_contig1132:2175..24141683185906.6605241-CDS-P-wetherbeei_contig1132:2175..2414Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1132 2176..2414 -
1683185906.6676745-CDS-P-wetherbeei_contig1132:2584..26971683185906.6676745-CDS-P-wetherbeei_contig1132:2584..2697Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1132 2585..2697 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1132.3.2prot_P-wetherbeei_contig1132.3.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1132 1557..2697 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1132.3.2

>prot_P-wetherbeei_contig1132.3.2 ID=prot_P-wetherbeei_contig1132.3.2|Name=mRNA_P-wetherbeei_contig1132.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=257bp
MSASLTVGSALIAFGPPAALIVLIVAQRASLLILLVTSAFFWLVSALLAS
LLWTAFPVAREQWLLVIIGGVSLQEFTRIGFVRLYKRAEKVILDATPTHQ
QMSSAMLVELNDVTSSIAAGVGWGTMHGAIFFGTVLAENRGPGAAYSEAC
PRVPLVLFSSWVALLFIALDVALSGLMFSSVGGGAGSSSDPSGVAGVFVL
HFAASLPTLLHEIPGGCAASLPLMIGVVAAAYVALWRRWRKHPVRRWQTR
PQRPMR*
back to top

mRNA from alignment at P-wetherbeei_contig1132:1512..2697-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1132.3.2 ID=mRNA_P-wetherbeei_contig1132.3.2|Name=mRNA_P-wetherbeei_contig1132.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1186bp|location=Sequence derived from alignment at P-wetherbeei_contig1132:1512..2697- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGCGTCGCTGACCGTCGGCAGCGCCCTGATAGCCTTCGGGCCGCC TGCCGCCCTCATCGTATTAATCGTGGCGCAAAGGGCGTCGTTGCTCATCC TTTTGGTGACGAGGTAGGATTTTTTTTGCTTTTTGCCAGGCGCCACGCTT TGCCCGTGCCTGGTCATTTCGCTGTACGTCGCTTGACGTCCTCCGAATCC GCAGTCAGCGCGCTGGTGTTCTGTTCTGGGAGAGATTTGGCTGAATACTT GTCAACCTTTACAACGATCCTTAACCCGCGCAGCGCCTTCTTTTGGCTAG TCTCTGCGCTGCTCGCGTCACTACTTTGGACGGCGTTCCCAGTCGCACGA GAGCAATGGCTGCTGGTCATTATCGGTGGAGTATCGTTGCAAGAATTCAC TCGAATCGGCTTTGTGAGGCTGTACAAACGGGCTGAAAAGGTCATCCTGG ACGCTACACCCACACATCAGCAAATGTCGTCGGCGATGCTCGTCGAGCTT AACGACGTCACCTCTTCTATCGGTGCGTCCGTGTTTTCCGCTGACGATGG ACATGGAAAATTCATAAAGCACCTCGGTTCCGGCCGGAGAAAGTGTGTGC TTTTTTGGAATTAACCAGTTGCTCAGCTTTGTGTAATCCTTCTTTTTGAA GATCTTCGCGAAATCTTCCGCCTTCCCCCGCGGTTTCTTTAATCCCCGCT CTTCGCTGTAAATTGGGTGCAGCCGCGGGCGTCGGGTGGGGCACTATGCA TGGCGCAATTTTCTTTGGCACGGTGCTCGCGGAGAACAGGGGCCCCGGCG CCGCCTACTCCGAGGCATGTCCGCGCGTGCCCCTCGTCCTCTTTTCGTCG TGGGTGGCCTTGCTTTTCATTGCGCTCGACGTGGCGCTTTCGGGGCTAAT GTTCAGCAGCGTCGGCGGCGGCGCCGGCAGCAGCAGCGACCCGAGCGGCG TCGCCGGGGTGTTCGTGCTGCACTTCGCGGCGTCGTTGCCGACGCTGCTC CACGAGATTCCCGGTGGCTGTGCGGCGAGCTTGCCGCTCATGATTGGGGT GGTGGCTGCGGCGTACGTCGCCTTGTGGAGAAGATGGCGGAAGCATCCCG TCAGACGGTGGCAAACGAGGCCACAGCGCCCAATGCGCTAAAAATCTAGT GGGTAAAAAGAGAAGAGAATAGCTTTCGCAACCGTC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1132:1512..2697-

>mRNA_P-wetherbeei_contig1132.3.2 ID=mRNA_P-wetherbeei_contig1132.3.2|Name=mRNA_P-wetherbeei_contig1132.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=771bp|location=Sequence derived from alignment at P-wetherbeei_contig1132:1512..2697- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGCGTCGCTGACCGTCGGCAGCGCCCTGATAGCCTTCGGGCCGCC
TGCCGCCCTCATCGTATTAATCGTGGCGCAAAGGGCGTCGTTGCTCATCC
TTTTGGTGACGAGCGCCTTCTTTTGGCTAGTCTCTGCGCTGCTCGCGTCA
CTACTTTGGACGGCGTTCCCAGTCGCACGAGAGCAATGGCTGCTGGTCAT
TATCGGTGGAGTATCGTTGCAAGAATTCACTCGAATCGGCTTTGTGAGGC
TGTACAAACGGGCTGAAAAGGTCATCCTGGACGCTACACCCACACATCAG
CAAATGTCGTCGGCGATGCTCGTCGAGCTTAACGACGTCACCTCTTCTAT
CGCCGCGGGCGTCGGGTGGGGCACTATGCATGGCGCAATTTTCTTTGGCA
CGGTGCTCGCGGAGAACAGGGGCCCCGGCGCCGCCTACTCCGAGGCATGT
CCGCGCGTGCCCCTCGTCCTCTTTTCGTCGTGGGTGGCCTTGCTTTTCAT
TGCGCTCGACGTGGCGCTTTCGGGGCTAATGTTCAGCAGCGTCGGCGGCG
GCGCCGGCAGCAGCAGCGACCCGAGCGGCGTCGCCGGGGTGTTCGTGCTG
CACTTCGCGGCGTCGTTGCCGACGCTGCTCCACGAGATTCCCGGTGGCTG
TGCGGCGAGCTTGCCGCTCATGATTGGGGTGGTGGCTGCGGCGTACGTCG
CCTTGTGGAGAAGATGGCGGAAGCATCCCGTCAGACGGTGGCAAACGAGG
CCACAGCGCCCAATGCGCTAA
back to top