mRNA_P-wetherbeei_contig11311.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11311.2.1
Unique NamemRNA_P-wetherbeei_contig11311.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11311.2.1 vs. uniprot
Match: W2PX75_PHYPN (Uncharacterized protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2PX75_PHYPN)

HSP 1 Score: 53.1 bits (126), Expect = 1.640e-6
Identity = 22/29 (75.86%), Postives = 26/29 (89.66%), Query Frame = 2 
Query:   53 QVSCTVTFDPATEGASLSHALDYFQYQVR 139
            QVSCTVTFDP TEG+ L+H LDYFQYQ++
Sbjct:   48 QVSCTVTFDPKTEGSQLAHMLDYFQYQLK 76
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BLAST of mRNA_P-wetherbeei_contig11311.2.1 vs. uniprot
Match: A0A6H5KM58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM58_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 2.280e-6
Identity = 23/30 (76.67%), Postives = 27/30 (90.00%), Query Frame = 2 
Query:   50 VQVSCTVTFDPATEGASLSHALDYFQYQVR 139
            VQVSCT+TFDP TEG  L+HALDYFQYQ++
Sbjct:  526 VQVSCTITFDPDTEGKHLAHALDYFQYQLK 555
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BLAST of mRNA_P-wetherbeei_contig11311.2.1 vs. uniprot
Match: A0A1Y1Z8W3_9FUNG (Ribonucleoside-triphosphate reductase (thioredoxin) n=2 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Z8W3_9FUNG)

HSP 1 Score: 53.5 bits (127), Expect = 5.840e-6
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 2 
Query:   17 LTLYIPLWCGVVQVSCTVTFDPATEGASLSHALDYFQYQVR 139
            LT ++  +    QVSCTVTFDP TEG  + HALDYFQYQ++
Sbjct:  589 LTSFLQRYWSDNQVSCTVTFDPETEGDQMKHALDYFQYQLK 629
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BLAST of mRNA_P-wetherbeei_contig11311.2.1 vs. uniprot
Match: D0MVF9_PHYIT (Ribonucleoside-triphosphate reductase (thioredoxin) n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MVF9_PHYIT)

HSP 1 Score: 53.1 bits (126), Expect = 7.930e-6
Identity = 22/29 (75.86%), Postives = 26/29 (89.66%), Query Frame = 2 
Query:   53 QVSCTVTFDPATEGASLSHALDYFQYQVR 139
            QVSCTVTFDP TEG+ L+H LDYFQYQ++
Sbjct:  574 QVSCTVTFDPKTEGSQLAHLLDYFQYQLK 602
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BLAST of mRNA_P-wetherbeei_contig11311.2.1 vs. uniprot
Match: A0A225VWJ8_9STRA (Ribonucleoside-triphosphate reductase (thioredoxin) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VWJ8_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 7.980e-6
Identity = 22/29 (75.86%), Postives = 26/29 (89.66%), Query Frame = 2 
Query:   53 QVSCTVTFDPATEGASLSHALDYFQYQVR 139
            QVSCTVTFDP TEG+ L+H LDYFQYQ++
Sbjct:  616 QVSCTVTFDPKTEGSQLAHMLDYFQYQLK 644
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BLAST of mRNA_P-wetherbeei_contig11311.2.1 vs. uniprot
Match: D7FJK6_ECTSI (Ribonucleoside-triphosphate reductase (thioredoxin) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJK6_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 7.980e-6
Identity = 22/29 (75.86%), Postives = 26/29 (89.66%), Query Frame = 2 
Query:   53 QVSCTVTFDPATEGASLSHALDYFQYQVR 139
            QVSCT+TFDP TEG  L+HALDYFQYQ++
Sbjct:  611 QVSCTITFDPETEGHHLAHALDYFQYQLK 639
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BLAST of mRNA_P-wetherbeei_contig11311.2.1 vs. uniprot
Match: A0A7S3J8B8_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Euplotes harpa TaxID=151035 RepID=A0A7S3J8B8_9SPIT)

HSP 1 Score: 50.1 bits (118), Expect = 1.250e-5
Identity = 22/29 (75.86%), Postives = 25/29 (86.21%), Query Frame = 2 
Query:   53 QVSCTVTFDPATEGASLSHALDYFQYQVR 139
            QVSCTVTFDP TEG SL  AL+YFQYQ++
Sbjct:   55 QVSCTVTFDPKTEGESLKPALEYFQYQLK 83
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BLAST of mRNA_P-wetherbeei_contig11311.2.1 vs. uniprot
Match: H3GD43_PHYRM (Ribonucleoside-triphosphate reductase (thioredoxin) n=4 Tax=Phytophthora TaxID=4783 RepID=H3GD43_PHYRM)

HSP 1 Score: 52.4 bits (124), Expect = 1.470e-5
Identity = 22/29 (75.86%), Postives = 25/29 (86.21%), Query Frame = 2 
Query:   53 QVSCTVTFDPATEGASLSHALDYFQYQVR 139
            QVSCTVTFDP TEG  L+H LDYFQYQ++
Sbjct:  538 QVSCTVTFDPKTEGLQLAHMLDYFQYQLK 566
[Close]
BLAST of mRNA_P-wetherbeei_contig11311.2.1 vs. uniprot
Match: A0A3R7GI44_9STRA (Ribonucleoside-triphosphate reductase (thioredoxin) n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GI44_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.470e-5
Identity = 22/29 (75.86%), Postives = 25/29 (86.21%), Query Frame = 2 
Query:   53 QVSCTVTFDPATEGASLSHALDYFQYQVR 139
            QVSCTVTFDP TEG  +SH LDYFQYQ++
Sbjct:  554 QVSCTVTFDPKTEGPHISHMLDYFQYQLK 582
[Close]
BLAST of mRNA_P-wetherbeei_contig11311.2.1 vs. uniprot
Match: A0A8J5M3B0_9STRA (Ribonucleoside-triphosphate reductase (thioredoxin) n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5M3B0_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.480e-5
Identity = 22/29 (75.86%), Postives = 25/29 (86.21%), Query Frame = 2 
Query:   53 QVSCTVTFDPATEGASLSHALDYFQYQVR 139
            QVSCTVTFDP TEG  L+H LDYFQYQ++
Sbjct:  606 QVSCTVTFDPKTEGPQLAHMLDYFQYQLK 634
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11311.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W2PX75_PHYPN1.640e-675.86Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
A0A6H5KM58_9PHAE2.280e-676.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1Y1Z8W3_9FUNG5.840e-658.54Ribonucleoside-triphosphate reductase (thioredoxin... [more]
D0MVF9_PHYIT7.930e-675.86Ribonucleoside-triphosphate reductase (thioredoxin... [more]
A0A225VWJ8_9STRA7.980e-675.86Ribonucleoside-triphosphate reductase (thioredoxin... [more]
D7FJK6_ECTSI7.980e-675.86Ribonucleoside-triphosphate reductase (thioredoxin... [more]
A0A7S3J8B8_9SPIT1.250e-575.86Hypothetical protein (Fragment) n=1 Tax=Euplotes h... [more]
H3GD43_PHYRM1.470e-575.86Ribonucleoside-triphosphate reductase (thioredoxin... [more]
A0A3R7GI44_9STRA1.470e-575.86Ribonucleoside-triphosphate reductase (thioredoxin... [more]
A0A8J5M3B0_9STRA1.480e-575.86Ribonucleoside-triphosphate reductase (thioredoxin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11311contigP-wetherbeei_contig11311:1849..2175 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog115417.EPrPW00000013846
Model size327
Max annot lvl121069|Pythiales
Hectar predicted targeting categorysignal peptide
Exons1
Evalue4.76e-07
EggNOG OGsCOG1372@1|root,2QRRC@2759|Eukaryota,1MEDD@121069|Pythiales
Descriptionreductase. Source PGD
Cds size318
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185906.5010405-UTR-P-wetherbeei_contig11311:1848..18531683185906.5010405-UTR-P-wetherbeei_contig11311:1848..1853Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11311 1849..1853 -
1683185906.5200183-UTR-P-wetherbeei_contig11311:2171..21751683185906.5200183-UTR-P-wetherbeei_contig11311:2171..2175Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11311 2172..2175 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185906.5112865-CDS-P-wetherbeei_contig11311:1853..21711683185906.5112865-CDS-P-wetherbeei_contig11311:1853..2171Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11311 1854..2171 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11311.2.1prot_P-wetherbeei_contig11311.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11311 1854..2171 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11311.2.1

>prot_P-wetherbeei_contig11311.2.1 ID=prot_P-wetherbeei_contig11311.2.1|Name=mRNA_P-wetherbeei_contig11311.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=106bp
MCRRLTLYIPLWCGVVQVSCTVTFDPATEGASLSHALDYFQYQVRCAERS
LARCRCCKCLRLSLSCRGLASASESRRSHWRAVDSDRLSPASRLFFFYGL
GRCCS*
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mRNA from alignment at P-wetherbeei_contig11311:1849..2175-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11311.2.1 ID=mRNA_P-wetherbeei_contig11311.2.1|Name=mRNA_P-wetherbeei_contig11311.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig11311:1849..2175- (Phaeothamnion wetherbeei SAG_119_79)
CCGCATGTGTCGGCGTCTGACGCTGTACATACCGCTTTGGTGCGGCGTCG
TCCAGGTCAGCTGCACGGTGACGTTCGACCCGGCCACCGAGGGCGCGTCG
CTGAGCCATGCGCTCGACTACTTTCAGTATCAAGTGAGATGTGCAGAACG
GTCGCTCGCCCGTTGTCGCTGTTGTAAATGTCTTCGGCTCTCTCTTTCCT
GTAGGGGTCTGGCCTCAGCATCGGAGTCAAGACGGAGCCACTGGAGGGCT
GTTGATTCCGACCGCCTCTCTCCTGCTTCCCGCCTCTTTTTCTTCTATGG
TCTCGGCCGGTGCTGCAGCTAAAGGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11311:1849..2175-

>mRNA_P-wetherbeei_contig11311.2.1 ID=mRNA_P-wetherbeei_contig11311.2.1|Name=mRNA_P-wetherbeei_contig11311.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=318bp|location=Sequence derived from alignment at P-wetherbeei_contig11311:1849..2175- (Phaeothamnion wetherbeei SAG_119_79)
ATGTGTCGGCGTCTGACGCTGTACATACCGCTTTGGTGCGGCGTCGTCCA
GGTCAGCTGCACGGTGACGTTCGACCCGGCCACCGAGGGCGCGTCGCTGA
GCCATGCGCTCGACTACTTTCAGTATCAAGTGAGATGTGCAGAACGGTCG
CTCGCCCGTTGTCGCTGTTGTAAATGTCTTCGGCTCTCTCTTTCCTGTAG
GGGTCTGGCCTCAGCATCGGAGTCAAGACGGAGCCACTGGAGGGCTGTTG
ATTCCGACCGCCTCTCTCCTGCTTCCCGCCTCTTTTTCTTCTATGGTCTC
GGCCGGTGCTGCAGCTAA
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