mRNA_P-wetherbeei_contig1130.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1130.3.1
Unique NamemRNA_P-wetherbeei_contig1130.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1130.3.1 vs. uniprot
Match: A0A835ZA77_9STRA (Cathepsin B-like proteinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA77_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 7.650e-13
Identity = 42/77 (54.55%), Postives = 48/77 (62.34%), Query Frame = 1 
Query:  727 HHVDPQAAGLPVC-SPSEYLRPACVNKCFDATCGVPHAHDKRFASSTSKLSTVEEIQADLMEHGPVTAAFSVYEDFL 954
            HHVDP A+G P C + +EY  P C N C DA+       DKR+A     L  V  IQ D+MEHGPVTAAFSVY DFL
Sbjct:  380 HHVDPGASGYPECPAGAEYPTPKCENACTDASYNTVFDDDKRYAKDAYSLHGVANIQKDMMEHGPVTAAFSVYSDFL 456
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BLAST of mRNA_P-wetherbeei_contig1130.3.1 vs. uniprot
Match: A0A6H5LCY9_9PHAE (Pept_C1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LCY9_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 3.000e-10
Identity = 35/77 (45.45%), Postives = 48/77 (62.34%), Query Frame = 1 
Query:  727 HHVDPQAAGLPVCSPSEYLRPACVNKCFDAT-CGVPHAHDKRFASSTSKLSTVEEIQADLMEHGPVTAAFSVYEDFL 954
            HHVDP A+G P C   EY  P C+++C +    G  +  DK+ A     L+ +E IQ D+M++G VTAAFSV+ DFL
Sbjct:  414 HHVDPGASGYPACPDGEYPTPECLSECSEINFSGGSYGEDKKMAREAYSLAGIENIQRDMMKYGSVTAAFSVFSDFL 490
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BLAST of mRNA_P-wetherbeei_contig1130.3.1 vs. uniprot
Match: A0A2C9JPF7_BIOGL (Pept_C1 domain-containing protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9JPF7_BIOGL)

HSP 1 Score: 65.5 bits (158), Expect = 8.720e-8
Identity = 35/80 (43.75%), Postives = 45/80 (56.25%), Query Frame = 1 
Query:  715 PKMTHHVDPQAAGLPVCSPSEYLRPACVNKCFDATCGVPHAHDKRFASSTSKLSTVEEIQADLMEHGPVTAAFSVYEDFL 954
            P   HHV      LP C P EY  P C  +C +++  +P+  DK F   T  +S  E I  +L+E+GPV AAFSVY DFL
Sbjct:  192 PACEHHV---VGKLPPCGPEEYPTPECKKQC-ESSYKIPYKADKHFGVKTYTVSGEENIMQELIENGPVEAAFSVYSDFL 267
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BLAST of mRNA_P-wetherbeei_contig1130.3.1 vs. uniprot
Match: CPR4_CAEEL (Cathepsin B-like cysteine proteinase 4 n=13 Tax=cellular organisms TaxID=131567 RepID=CPR4_CAEEL)

HSP 1 Score: 61.6 bits (148), Expect = 1.510e-6
Identity = 31/66 (46.97%), Postives = 40/66 (60.61%), Query Frame = 1 
Query:  757 PVCSPSEYLRPACVNKCFDATCGVPHAHDKRFASSTSKLST-VEEIQADLMEHGPVTAAFSVYEDF 951
            P C    Y  PACVNKC +    V +  DK F S+   +   V +IQA+++ HGPV AAF+VYEDF
Sbjct:  197 PSCPDDGYDTPACVNKCTNKNYNVAYTADKHFGSTAYAVGKKVSQIQAEIIAHGPVEAAFTVYEDF 262
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BLAST of mRNA_P-wetherbeei_contig1130.3.1 vs. uniprot
Match: A0A5A8C1L9_CAFRO (Pept_C1 domain-containing protein n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8C1L9_CAFRO)

HSP 1 Score: 60.8 bits (146), Expect = 2.740e-6
Identity = 36/80 (45.00%), Postives = 45/80 (56.25%), Query Frame = 1 
Query:  715 PKMTHHVDPQAAGLPVCSPSEYLRPACVNKCFDATCGVPHAHDKRFASSTSKLSTVEEIQADLMEHGPVTAAFSVYEDFL 954
            P   HHV       P C       PAC ++C D    VP+A DK  A S   L++V +IQ D+ ++G VTAAFSVYEDFL
Sbjct:  194 PPCEHHVK---GPRPDCKEGG-ATPACTSQC-DTGYSVPYAKDKHMAKSVYSLNSVADIQQDIYQYGAVTAAFSVYEDFL 268
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BLAST of mRNA_P-wetherbeei_contig1130.3.1 vs. uniprot
Match: W7TUA6_9STRA (Cathepsin b n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TUA6_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 3.480e-6
Identity = 33/77 (42.86%), Postives = 46/77 (59.74%), Query Frame = 1 
Query:  727 HHVDPQAAGLPVCSPSEYLRPACVNKCFDATCGVPHAHDKRFAS-STSKLSTVEEIQADLMEHGPVTAAFSVYEDFL 954
            HHV+P    LP C   ++  P C + C +      ++ DKR A    S  + VEEIQ ++ME GPV+AAF+VY+DFL
Sbjct:  345 HHVEPTEE-LPACPAEDFETPRCRHTCSEELYEETYSADKRMAKRGYSVRANVEEIQKEIMESGPVSAAFTVYQDFL 420
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BLAST of mRNA_P-wetherbeei_contig1130.3.1 vs. uniprot
Match: UPI00192D4453 (hypothetical protein n=1 Tax=Acinetobacter pittii TaxID=48296 RepID=UPI00192D4453)

HSP 1 Score: 57.8 bits (138), Expect = 4.100e-6
Identity = 32/80 (40.00%), Postives = 38/80 (47.50%), Query Frame = 1 
Query:  715 PKMTHHVDPQAAGLPVCSP-SEYLRPACVNKCFDATCGVPHAHDKRFASSTSKLSTVEEIQADLMEHGPVTAAFSVYEDF 951
            P   HH +     LP CS   EY  P C  KC ++   VP   D         L  VE+IQ D++ HGPV A F VY DF
Sbjct:   20 PXCEHHTE---GSLPACSSLPEYDTPRCEKKCTNSQYXVPFKQDHHKVKKGYSLRGVEQIQRDILAHGPVEAGFDVYXDF 96
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BLAST of mRNA_P-wetherbeei_contig1130.3.1 vs. uniprot
Match: A0A0B7AQF3_9EUPU (Pept_C1 domain-containing protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7AQF3_9EUPU)

HSP 1 Score: 56.2 bits (134), Expect = 5.830e-5
Identity = 32/80 (40.00%), Postives = 41/80 (51.25%), Query Frame = 1 
Query:  715 PKMTHHVDPQAAGLPVCSPSEYLRPACVNKCFDATCGVPHAHDKRFASSTSKLSTVEEIQADLMEHGPVTAAFSVYEDFL 954
            P   HH       L  C   E   P C N C D+   +P+A DK F   T  ++  E I  +L+++GPV AAFSVY DFL
Sbjct:  199 PACEHHT---TGHLQPCGGKEAETPECKNVCEDSY-KIPYAKDKHFGVKTYSVTGEENIMQELVQNGPVEAAFSVYSDFL 274
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BLAST of mRNA_P-wetherbeei_contig1130.3.1 vs. uniprot
Match: A0A0G4G3C8_9ALVE (Pept_C1 domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4G3C8_9ALVE)

HSP 1 Score: 57.0 bits (136), Expect = 6.400e-5
Identity = 31/80 (38.75%), Postives = 46/80 (57.50%), Query Frame = 1 
Query:  715 PKMTHHVDPQAAGLPVCSPSEYLRPACVNKCFDATCGVPHAHDKRFASSTSKLSTVEEIQADLMEHGPVTAAFSVYEDFL 954
            P  +HH + +   LP C  +    P+C + C +   G     DKR A+    + +V EI+ +L+ +GPVTAAF+VYEDFL
Sbjct:  259 PMCSHHSESE---LPPCGETRPT-PSCRSSCSEEEFGSEFKADKRRATKAYSIGSVSEIKKELVNNGPVTAAFTVYEDFL 334
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1130.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A835ZA77_9STRA7.650e-1354.55Cathepsin B-like proteinase n=1 Tax=Tribonema minu... [more]
A0A6H5LCY9_9PHAE3.000e-1045.45Pept_C1 domain-containing protein n=2 Tax=Ectocarp... [more]
A0A2C9JPF7_BIOGL8.720e-843.75Pept_C1 domain-containing protein n=1 Tax=Biomphal... [more]
CPR4_CAEEL1.510e-646.97Cathepsin B-like cysteine proteinase 4 n=13 Tax=ce... [more]
A0A5A8C1L9_CAFRO2.740e-645.00Pept_C1 domain-containing protein n=3 Tax=Sar TaxI... [more]
W7TUA6_9STRA3.480e-642.86Cathepsin b n=2 Tax=Monodopsidaceae TaxID=425072 R... [more]
UPI00192D44534.100e-640.00hypothetical protein n=1 Tax=Acinetobacter pittii ... [more]
A0A0B7AQF3_9EUPU5.830e-540.00Pept_C1 domain-containing protein (Fragment) n=1 T... [more]
A0A0G4G3C8_9ALVE6.400e-538.75Pept_C1 domain-containing protein n=1 Tax=Chromera... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1130contigP-wetherbeei_contig1130:5624..7820 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LG82
PFAMsPeptidase_C1,Propeptide_C1
Model size1826
Max annot lvl2759|Eukaryota
KEGG koko:K01363
KEGG Pathwayko04140,ko04142,ko04210,ko04612,ko04621,ko04924,map04140,map04142,map04210,map04612,map04621,map04924
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.81e-12
EggNOG OGsCOG4870@1|root,KOG1543@2759|Eukaryota
EC3.4.22.1
Descriptioncysteine-type peptidase activity
Cds size825
COG categoryO
BRITEko00000,ko00001,ko00536,ko01000,ko01002,ko03110,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185906.2745626-UTR-P-wetherbeei_contig1130:5623..61981683185906.2745626-UTR-P-wetherbeei_contig1130:5623..6198Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1130 5624..6198 -
1683185906.2975142-UTR-P-wetherbeei_contig1130:7394..78201683185906.2975142-UTR-P-wetherbeei_contig1130:7394..7820Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1130 7395..7820 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185906.2831733-CDS-P-wetherbeei_contig1130:6198..67251683185906.2831733-CDS-P-wetherbeei_contig1130:6198..6725Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1130 6199..6725 -
1683185906.2903252-CDS-P-wetherbeei_contig1130:7096..73941683185906.2903252-CDS-P-wetherbeei_contig1130:7096..7394Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1130 7097..7394 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1130.3.1prot_P-wetherbeei_contig1130.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1130 6199..7394 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1130.3.1

>prot_P-wetherbeei_contig1130.3.1 ID=prot_P-wetherbeei_contig1130.3.1|Name=mRNA_P-wetherbeei_contig1130.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=275bp
MEDKVAAAAADGADEEEGFGSAISGIGDAVRVVGGAVIGIIGGPGVASVG
VTGLLPPSMRLASSGGGGCRDWRSLSRWRRMGRGRWSSGTRLRRGCPKMT
HHVDPQAAGLPVCSPSEYLRPACVNKCFDATCGVPHAHDKRFASSTSKLS
TVEEIQADLMEHGPVTAAFSVYEDFLMGSVLAAILVIVANLAAAAAAICG
NVATATAAVVTSLAAAAAAAPTAHSFCGFARAEETCITAVLSPTCFRLCT
HASFSGFFHMRDAPLFLQDAQRTQ*
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mRNA from alignment at P-wetherbeei_contig1130:5624..7820-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1130.3.1 ID=mRNA_P-wetherbeei_contig1130.3.1|Name=mRNA_P-wetherbeei_contig1130.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2197bp|location=Sequence derived from alignment at P-wetherbeei_contig1130:5624..7820- (Phaeothamnion wetherbeei SAG_119_79)
CTTCATGAGCTTTGTTTGAAGTATGGACTCTCTTCATGAGCATTTAACCA
GGCGTGCCCTTTCAGTTCAGCACCGTGCCCGGATCGGCTAGGCTTCCTAC
GTTCTTTTTCATCCTCACGAGCCATCGGCCCCTTCCTCGCCGCCGCCATC
GCAACTCGCCGCCACCGCGATCACCGCTGGTGCAACTACCGCCGTCTGCA
GCCGCTGCCGCCGCTGCGTGCACCGCTGCCATTTTCCCACCGCTCTCCCG
ACCCCTTTCAGAAAAGGTGTAAGGGCTTCGGGATCGAATGCCCTCTGCAC
GCCGCTGAGCCGTTCTTCGGCACGCTGCAATACCCGACGCCGGACGACGC
CCCAACAGGCGTTCTGATCAAGGCACGGGTCAAGGCCCGACAGGAGGACG
GCGGCGCCAAGCTGACCTGCGTCGAGATGGAAGACAAGGTCGCCGCCGCC
GCCGCCGACGGCGCCGACGAAGAGGAAGGGTTCGGCAGTGCCATTTCCGG
CATTGGTGATGCCGTGCGGGTCGTCGGCGGCGCCGTCATTGGGATCATAG
GGGGGCCCGGCGTGGCGAGCGTCGGCGTCACGGGCCTGCTACCGCCGTCG
ATGCGGCTGGCGTCAAGCGGCGGCGGCGGCTGCAGGGACTGGCGGTCCCT
CTCTCGCTGGAGGAGGATGGGAAGGGGGAGGTGGAGCAGCGGGACGCGTT
TGAGGCGGGGCTGTCCGAAGATGAGTGGCGTGGGAAGGGTGTTCTTGACA
AGACGAGACGAATGACTCGAAGATGCTGCCAGAGTTTTAGGTGCTGCTGG
ACCCATTGTTGCCTGGCATCTCCACGAATCGAAGTATGCGATTAGTCAGG
AAGCGGCGGGACATTTTGGGCCTCTTTTCTCCTGCTTCGATTCGATTCGG
TGCGGGCGTCCCGCAGTGATTAACTGGCTGAAGCCTGAACGTCGCCATGG
ACTGCAACGGCGGCCAGCCCGGCGTGGCGTGGCGGTGGTTCCGCCGGACG
GGCGTCGTCACGCGTCGCTCGGCATGGCCGCGATTGCAACCGTAACCACC
GCCACCGTCTGCCGCGATTGCCGCCATTCTTGCCGCGACACGCAGCCCAC
CACGTCGACCCTCAGGCGGCGGGGTTGCCCGTGTGCTCGCCATCGGAATA
CCTGAGACCGGCCTGCGTAAACAAGTGCTTCGACGCGACCTGTGGTGTGC
CGCACGCCCACGACAAGCGTTTCGCGTCGTCGACCTCCAAATTGTCGACG
GTCGAAGAGATCCAGGCGGACCTGATGGAGCACGGCCCCGTCACGGCCGC
CTTCAGCGTCTACGAAGACTTTCTGATGGGTTCGGTATTGGCGGCGATAT
TGGTGATAGTGGCGAATCTCGCAGCAGCGGCGGCGGCAATCTGTGGCAAT
GTGGCCACAGCTACTGCGGCTGTTGTGACATCGTTGGCGGCTGCGGCGGC
GGCGGCACCGACAGCTCATTCGTTTTGCGGTTTTGCGCGAGCAGAGGAAA
CGTGTATAACCGCCGTTCTCTCACCGACCTGTTTCCGCCTTTGTACACAT
GCCTCATTTAGCGGCTTCTTCCACATGCGGGATGCACCGCTCTTCTTGCA
GGATGCACAGAGGACCCAGTGAACATCTTTCTAAGGATCTGAGCTGAGCT
TTCAAGCCCTTGATGTTTTGGTGCTCTTTGTCTTCTTTCGCTATTCCAAG
GCGCTTATTCACGTCTTATTGCTGCTGCCGCCGTTATTTCCTGAAATTGC
TACTGCAAAGAACAGACGCACTCCGGCGGCGTCCGAAACAGCTGGTTCTG
CCGCACCGCCAGCAGGAGCCGGCGACCGCAGGCGCTGGTATCAGCGGCGG
CGACGGTGCAGCTGTCCACGAAGACCATCGGGCGGCCGCGGATGCAGAAG
GCTACGTAGAGGAACGGGCGCTCCTTGCCATATTCCACCCGCACCTGTGA
TTGATGGTCAGGAGAGAACGCCGATGCATTTTAAGAAAATACGAACGCTT
TTTGGTTCGGTTTTCATTTCCCCAAACAAGCTCGTTCGGTGCCGCTTTCT
CTCCATGCGGTTTGCTTCTCCTCTTCCTCTTGCGGTCAAATTATATGCTC
CGCCACGTTTTTCCCACGCCATTGCAGCAGTTTCTGCACGCTTTGGAGCA
GGTTTTTGAAATCATCTCAGCAGTTGTCCCGGATTTCACCACAGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1130:5624..7820-

>mRNA_P-wetherbeei_contig1130.3.1 ID=mRNA_P-wetherbeei_contig1130.3.1|Name=mRNA_P-wetherbeei_contig1130.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=825bp|location=Sequence derived from alignment at P-wetherbeei_contig1130:5624..7820- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAGACAAGGTCGCCGCCGCCGCCGCCGACGGCGCCGACGAAGAGGA
AGGGTTCGGCAGTGCCATTTCCGGCATTGGTGATGCCGTGCGGGTCGTCG
GCGGCGCCGTCATTGGGATCATAGGGGGGCCCGGCGTGGCGAGCGTCGGC
GTCACGGGCCTGCTACCGCCGTCGATGCGGCTGGCGTCAAGCGGCGGCGG
CGGCTGCAGGGACTGGCGGTCCCTCTCTCGCTGGAGGAGGATGGGAAGGG
GGAGGTGGAGCAGCGGGACGCGTTTGAGGCGGGGCTGTCCGAAGATGACC
CACCACGTCGACCCTCAGGCGGCGGGGTTGCCCGTGTGCTCGCCATCGGA
ATACCTGAGACCGGCCTGCGTAAACAAGTGCTTCGACGCGACCTGTGGTG
TGCCGCACGCCCACGACAAGCGTTTCGCGTCGTCGACCTCCAAATTGTCG
ACGGTCGAAGAGATCCAGGCGGACCTGATGGAGCACGGCCCCGTCACGGC
CGCCTTCAGCGTCTACGAAGACTTTCTGATGGGTTCGGTATTGGCGGCGA
TATTGGTGATAGTGGCGAATCTCGCAGCAGCGGCGGCGGCAATCTGTGGC
AATGTGGCCACAGCTACTGCGGCTGTTGTGACATCGTTGGCGGCTGCGGC
GGCGGCGGCACCGACAGCTCATTCGTTTTGCGGTTTTGCGCGAGCAGAGG
AAACGTGTATAACCGCCGTTCTCTCACCGACCTGTTTCCGCCTTTGTACA
CATGCCTCATTTAGCGGCTTCTTCCACATGCGGGATGCACCGCTCTTCTT
GCAGGATGCACAGAGGACCCAGTGA
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