mRNA_P-wetherbeei_contig1130.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1130.2.1
Unique NamemRNA_P-wetherbeei_contig1130.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1130.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1130contigP-wetherbeei_contig1130:4531..5149 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog3750.XP_008366369.1
PFAMsRetrotran_gag_2,Retrotran_gag_3,gag_pre-integrs
Model size621
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.36e-05
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37V0Y@33090|Viridiplantae,3GIY6@35493|Streptophyta
Descriptiongag-polypeptide of LTR copia-type
Cds size588
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185906.2320697-UTR-P-wetherbeei_contig1130:4530..45611683185906.2320697-UTR-P-wetherbeei_contig1130:4530..4561Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1130 4531..4561 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185906.2429202-CDS-P-wetherbeei_contig1130:4561..51491683185906.2429202-CDS-P-wetherbeei_contig1130:4561..5149Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1130 4562..5149 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1130.2.1prot_P-wetherbeei_contig1130.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1130 4562..5149 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1130.2.1

>prot_P-wetherbeei_contig1130.2.1 ID=prot_P-wetherbeei_contig1130.2.1|Name=mRNA_P-wetherbeei_contig1130.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=196bp
MLYCPGPPRKKGLGGNDTVLGCSNLQVLTVSFALRVAFPALCGTGGNVSW
IVDSGAQAHVTSSLRGLSNVRLYEGLVCGVGGGTAPIVALGDLNGFVCDT
LGIEVPISLKDVRYAPTAGFALLSAHRIAANNGIFELGDGRTGAERAVLR
YPRQQRTLPLRRVDDSAHVLDISLACSADYVVAALPTATSTSRGSG
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mRNA from alignment at P-wetherbeei_contig1130:4531..5149+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1130.2.1 ID=mRNA_P-wetherbeei_contig1130.2.1|Name=mRNA_P-wetherbeei_contig1130.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=619bp|location=Sequence derived from alignment at P-wetherbeei_contig1130:4531..5149+ (Phaeothamnion wetherbeei SAG_119_79)
GTGCAGCCGCTGCCGCAAGGTCGGCCACAGCATGTTGTACTGCCCGGGCC
CCCCGCGGAAGAAGGGCCTCGGAGGTAATGACACTGTTTTGGGCTGCTCA
AATCTCCAAGTTTTGACTGTGTCTTTCGCACTGCGTGTCGCTTTTCCTGC
GCTCTGCGGAACTGGCGGCAACGTCAGCTGGATTGTGGACTCTGGCGCTC
AGGCGCATGTCACCAGCTCTCTTCGGGGCCTGTCCAACGTGCGCCTTTAT
GAAGGTCTCGTGTGCGGCGTCGGCGGTGGAACCGCACCGATCGTAGCTTT
GGGCGACCTCAATGGGTTCGTCTGCGATACTCTCGGCATCGAAGTGCCGA
TCTCACTGAAAGACGTGCGGTATGCACCAACCGCCGGTTTTGCGCTGCTC
TCGGCGCACCGCATCGCTGCCAACAACGGCATCTTCGAGCTAGGAGACGG
CCGGACCGGCGCGGAACGCGCCGTGCTGCGTTACCCCCGGCAGCAGCGGA
CTCTTCCACTCCGACGAGTTGATGACAGCGCACACGTTCTTGACATCTCG
CTCGCCTGCTCGGCAGATTACGTCGTGGCGGCACTCCCGACAGCGACCTC
GACGAGCCGCGGAAGCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1130:4531..5149+

>mRNA_P-wetherbeei_contig1130.2.1 ID=mRNA_P-wetherbeei_contig1130.2.1|Name=mRNA_P-wetherbeei_contig1130.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=588bp|location=Sequence derived from alignment at P-wetherbeei_contig1130:4531..5149+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTGTACTGCCCGGGCCCCCCGCGGAAGAAGGGCCTCGGAGGTAATGA
CACTGTTTTGGGCTGCTCAAATCTCCAAGTTTTGACTGTGTCTTTCGCAC
TGCGTGTCGCTTTTCCTGCGCTCTGCGGAACTGGCGGCAACGTCAGCTGG
ATTGTGGACTCTGGCGCTCAGGCGCATGTCACCAGCTCTCTTCGGGGCCT
GTCCAACGTGCGCCTTTATGAAGGTCTCGTGTGCGGCGTCGGCGGTGGAA
CCGCACCGATCGTAGCTTTGGGCGACCTCAATGGGTTCGTCTGCGATACT
CTCGGCATCGAAGTGCCGATCTCACTGAAAGACGTGCGGTATGCACCAAC
CGCCGGTTTTGCGCTGCTCTCGGCGCACCGCATCGCTGCCAACAACGGCA
TCTTCGAGCTAGGAGACGGCCGGACCGGCGCGGAACGCGCCGTGCTGCGT
TACCCCCGGCAGCAGCGGACTCTTCCACTCCGACGAGTTGATGACAGCGC
ACACGTTCTTGACATCTCGCTCGCCTGCTCGGCAGATTACGTCGTGGCGG
CACTCCCGACAGCGACCTCGACGAGCCGCGGAAGCGGC
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