mRNA_P-wetherbeei_contig1130.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1130.1.1
Unique NamemRNA_P-wetherbeei_contig1130.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1130.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1130contigP-wetherbeei_contig1130:3430..4255 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size828
Hectar predicted targeting categoryother localisation
Exons1
Cds size732
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185906.1938007-UTR-P-wetherbeei_contig1130:3429..35231683185906.1938007-UTR-P-wetherbeei_contig1130:3429..3523Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1130 3430..3523 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185906.2031908-CDS-P-wetherbeei_contig1130:3523..42551683185906.2031908-CDS-P-wetherbeei_contig1130:3523..4255Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1130 3524..4255 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1130.1.1prot_P-wetherbeei_contig1130.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1130 3524..4255 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1130.1.1

>prot_P-wetherbeei_contig1130.1.1 ID=prot_P-wetherbeei_contig1130.1.1|Name=mRNA_P-wetherbeei_contig1130.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=244bp
MASSFELIYFGAEMKAQDFEPWKKRFMNSLARGDLLTVERVLLDENPMRP
VALPTPPAHDASPTERAAHSAALAKADKHNEDYEAAERRGAALLEEAVSR
NEDMLGYFAELRTDQQRRASVVMKELTKRYKAKSGKAMNDAMRAFTLFEL
APGSNASPIVIQSSFNKIRRQLEALGTPVAEMQALSRILEVLGASDRWAS
FARRCRETNLATSAEVFEAMADVWSEETIRVLPTLSIDGGGGGG
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mRNA from alignment at P-wetherbeei_contig1130:3430..4255+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1130.1.1 ID=mRNA_P-wetherbeei_contig1130.1.1|Name=mRNA_P-wetherbeei_contig1130.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=826bp|location=Sequence derived from alignment at P-wetherbeei_contig1130:3430..4255+ (Phaeothamnion wetherbeei SAG_119_79)
GAGAGCGCCCTTTCTAAAAGGTTATAGCCTGATTTGTCGTTGCAGAGTTG
TAGACTGGTTTCTCCTCTGTCCTCCCTCCAATAGTTAAGGAAAAATGGCT
AGTTCTTTCGAGCTCATTTATTTCGGCGCCGAGATGAAGGCTCAAGACTT
CGAACCGTGGAAGAAAAGGTTCATGAATAGCCTCGCCCGAGGCGACCTGC
TTACCGTGGAGCGCGTTCTCCTGGATGAGAATCCAATGCGACCGGTTGCG
CTTCCAACGCCACCTGCGCATGATGCATCGCCGACGGAGAGAGCCGCGCA
TTCTGCCGCGCTGGCGAAGGCGGATAAGCACAACGAGGACTACGAAGCCG
CGGAGCGGCGCGGGGCAGCTCTGCTCGAGGAAGCTGTCAGCAGAAATGAA
GACATGCTCGGATACTTTGCCGAGCTCAGGACGGATCAGCAGCGACGCGC
CTCCGTCGTGATGAAGGAGCTCACGAAGAGGTACAAGGCGAAGTCCGGCA
AGGCGATGAACGACGCGATGCGGGCCTTCACGCTCTTCGAACTGGCCCCT
GGGAGCAATGCATCACCGATCGTCATCCAGTCATCGTTTAACAAAATTCG
TCGGCAGCTGGAGGCGCTGGGCACGCCGGTGGCAGAGATGCAGGCGCTAT
CGAGGATCTTGGAGGTTCTCGGGGCGTCGGACCGCTGGGCGAGCTTTGCC
CGCCGATGCCGCGAAACCAACCTGGCAACGTCGGCCGAGGTCTTTGAAGC
CATGGCCGACGTTTGGTCGGAGGAGACCATCCGCGTGCTGCCGACTCTTT
CAATTGATGGTGGCGGCGGCGGCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1130:3430..4255+

>mRNA_P-wetherbeei_contig1130.1.1 ID=mRNA_P-wetherbeei_contig1130.1.1|Name=mRNA_P-wetherbeei_contig1130.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=732bp|location=Sequence derived from alignment at P-wetherbeei_contig1130:3430..4255+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTAGTTCTTTCGAGCTCATTTATTTCGGCGCCGAGATGAAGGCTCA
AGACTTCGAACCGTGGAAGAAAAGGTTCATGAATAGCCTCGCCCGAGGCG
ACCTGCTTACCGTGGAGCGCGTTCTCCTGGATGAGAATCCAATGCGACCG
GTTGCGCTTCCAACGCCACCTGCGCATGATGCATCGCCGACGGAGAGAGC
CGCGCATTCTGCCGCGCTGGCGAAGGCGGATAAGCACAACGAGGACTACG
AAGCCGCGGAGCGGCGCGGGGCAGCTCTGCTCGAGGAAGCTGTCAGCAGA
AATGAAGACATGCTCGGATACTTTGCCGAGCTCAGGACGGATCAGCAGCG
ACGCGCCTCCGTCGTGATGAAGGAGCTCACGAAGAGGTACAAGGCGAAGT
CCGGCAAGGCGATGAACGACGCGATGCGGGCCTTCACGCTCTTCGAACTG
GCCCCTGGGAGCAATGCATCACCGATCGTCATCCAGTCATCGTTTAACAA
AATTCGTCGGCAGCTGGAGGCGCTGGGCACGCCGGTGGCAGAGATGCAGG
CGCTATCGAGGATCTTGGAGGTTCTCGGGGCGTCGGACCGCTGGGCGAGC
TTTGCCCGCCGATGCCGCGAAACCAACCTGGCAACGTCGGCCGAGGTCTT
TGAAGCCATGGCCGACGTTTGGTCGGAGGAGACCATCCGCGTGCTGCCGA
CTCTTTCAATTGATGGTGGCGGCGGCGGCGGC
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