mRNA_P-wetherbeei_contig11291.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11291.1.1
Unique NamemRNA_P-wetherbeei_contig11291.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11291.1.1 vs. uniprot
Match: W7TQL4_9STRA (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQL4_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 9.470e-12
Identity = 30/45 (66.67%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    7 SQDHYFEKDRIHKGKGDPNKRTFVYFMLGAGRFIYASTARLTFLK 141
            S D+Y+EKD++HK  GDPNKR F YF+LG  RFIYAS ARL  LK
Sbjct:   48 SFDNYYEKDKLHKKPGDPNKRDFTYFVLGGARFIYASAARLVALK 92
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BLAST of mRNA_P-wetherbeei_contig11291.1.1 vs. uniprot
Match: A0A6V1WQS7_HETAK (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1WQS7_HETAK)

HSP 1 Score: 64.7 bits (156), Expect = 3.440e-11
Identity = 32/46 (69.57%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    4 SSQDHYFEKDRIHKGKGDPNKRTFVYFMLGAGRFIYASTARLTFLK 141
            SSQDHYFEKDR+ KG+   NKR F YFMLG  RFIYAS ARL  +K
Sbjct:   46 SSQDHYFEKDRLAKGE---NKREFTYFMLGCSRFIYASAARLALIK 88
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BLAST of mRNA_P-wetherbeei_contig11291.1.1 vs. uniprot
Match: D7FK16_ECTSI (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK16_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 8.650e-11
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    4 SSQDHYFEKDRIHKGKGDPNKRTFVYFMLGAGRFIYASTARLTFLK 141
            ++QD YFEKDR+   KGDP KR F YFMLGA RF+YAS+ARL  LK
Sbjct:   69 TNQDGYFEKDRV--AKGDPGKREFTYFMLGASRFLYASSARLILLK 112
[Close]
BLAST of mRNA_P-wetherbeei_contig11291.1.1 vs. uniprot
Match: A0A836CDL7_9STRA (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDL7_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.470e-6
Identity = 25/47 (53.19%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:    1 FSSQDHYFEKDRIHKGKGDPNKRTFVYFMLGAGRFIYASTARLTFLK 141
            F SQD  FEKDR+  G    N + F YF+LG GRF+YASTAR+  ++
Sbjct:   57 FDSQDGAFEKDRVEPGT---NHKEFTYFLLGGGRFVYASTARVILIQ 100
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11291.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
W7TQL4_9STRA9.470e-1266.67Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
A0A6V1WQS7_HETAK3.440e-1169.57Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
D7FK16_ECTSI8.650e-1167.39Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
A0A836CDL7_9STRA1.470e-653.19Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11291contigP-wetherbeei_contig11291:1976..2140 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog42099.EPrPV00000022319
PFAMsRieske,UCR_TM
Model size165
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue4.74e-10
EggNOG OGsCOG0723@1|root,KOG1671@2759|Eukaryota,1MAXT@121069|Pythiales
Ec32 ortholog descriptionUbiquinol-cytochrome c reductase iron-sulfur subunit 1, (Rieske iron-sulfur protein 1) (RISP1)
Ec32 orthologEc-18_002810.1
DescriptionUbiquinol-cytochrome c reductase iron-sulfur subunit. Source PGD
Cds size165
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185905.5113103-CDS-P-wetherbeei_contig11291:1975..21401683185905.5113103-CDS-P-wetherbeei_contig11291:1975..2140Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11291 1976..2140 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11291.1.1prot_P-wetherbeei_contig11291.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11291 1976..2140 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11291.1.1

>prot_P-wetherbeei_contig11291.1.1 ID=prot_P-wetherbeei_contig11291.1.1|Name=mRNA_P-wetherbeei_contig11291.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=55bp
FSSQDHYFEKDRIHKGKGDPNKRTFVYFMLGAGRFIYASTARLTFLKVRR
REEII
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mRNA from alignment at P-wetherbeei_contig11291:1976..2140+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11291.1.1 ID=mRNA_P-wetherbeei_contig11291.1.1|Name=mRNA_P-wetherbeei_contig11291.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=165bp|location=Sequence derived from alignment at P-wetherbeei_contig11291:1976..2140+ (Phaeothamnion wetherbeei SAG_119_79)
TTCTCGTCGCAGGACCACTATTTCGAGAAGGACCGGATCCACAAGGGGAA
GGGCGACCCGAACAAACGCACGTTTGTGTATTTCATGCTCGGGGCCGGGC
GGTTCATCTATGCATCGACGGCGCGCCTGACTTTTCTCAAGGTGAGAAGA
AGAGAAGAGATAATT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11291:1976..2140+

>mRNA_P-wetherbeei_contig11291.1.1 ID=mRNA_P-wetherbeei_contig11291.1.1|Name=mRNA_P-wetherbeei_contig11291.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=165bp|location=Sequence derived from alignment at P-wetherbeei_contig11291:1976..2140+ (Phaeothamnion wetherbeei SAG_119_79)
TTCTCGTCGCAGGACCACTATTTCGAGAAGGACCGGATCCACAAGGGGAA
GGGCGACCCGAACAAACGCACGTTTGTGTATTTCATGCTCGGGGCCGGGC
GGTTCATCTATGCATCGACGGCGCGCCTGACTTTTCTCAAGGTGAGAAGA
AGAGAAGAGATAATT
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