mRNA_P-wetherbeei_contig11290.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11290.1.1
Unique NamemRNA_P-wetherbeei_contig11290.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11290.1.1 vs. uniprot
Match: A0A835YYQ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYQ9_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.520e-16
Identity = 61/150 (40.67%), Postives = 84/150 (56.00%), Query Frame = 1 
Query:   28 DKLFELTVKFVGTAGVSILKARPLASRFTAIEGSRSTP-RVVFGSLVLENKTQALPLDYRFALQAC--GPVKE--VSRRLSGMRPGSAQLLVLAAEQGRLSPAGTDGSTVAVRYCCIFKRFFGLFRHTILIEN--LSSPISDGARRAAAV 456
            DKLFELTVKFVGTAGVSI++A P  S+F  ++ S        +G   LEN ++ALPLDYR  +Q C  G   E  + + L  M PG+A+LLV+  + G + P     + VA++YC + K   GL    I  +    SS ++ G    A V
Sbjct:  764 DKLFELTVKFVGTAGVSIMRAAPTQSKFAVLKCSEGRGITTAYGQFQLENGSKALPLDYRLPMQRCIDGAFTEEGIDQALLSMLPGTAELLVVGTDTGTIPP----NTKVALKYCILSKGKLGLIHSRIKADQSAASSGLTVGTEGGAPV 909
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11290.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YYQ9_9STRA1.520e-1640.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11290contigP-wetherbeei_contig11290:48..1628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LHH6
Model size1582
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.76e-18
EggNOG OGs28MMI@1|root,2QU5A@2759|Eukaryota
Cds size1581
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185905.484428-CDS-P-wetherbeei_contig11290:47..16281683185905.484428-CDS-P-wetherbeei_contig11290:47..1628Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11290 48..1628 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11290.1.1prot_P-wetherbeei_contig11290.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11290 48..1628 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11290.1.1

>prot_P-wetherbeei_contig11290.1.1 ID=prot_P-wetherbeei_contig11290.1.1|Name=mRNA_P-wetherbeei_contig11290.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=527bp
MQRLVPREQDKLFELTVKFVGTAGVSILKARPLASRFTAIEGSRSTPRVV
FGSLVLENKTQALPLDYRFALQACGPVKEVSRRLSGMRPGSAQLLVLAAE
QGRLSPAGTDGSTVAVRYCCIFKRFFGLFRHTILIENLSSPISDGARRAA
AVAHTVRVFVDDGTMRIDLPADPLDDAGKAAPDDGRLRDEREALAPPLET
LRVAAPIFVRPMAARSGGGGGEAAAGGGGKGGGGKGGVDGQAAAAAAAAA
ATEIGSGAAAVPAVTPTAVIVRRSSIGRIASVEDTDAATAAGTGGAGGVA
ATIVCATLPRPLGPKATVAGIPKVEATTTVASASGDAAAAAAGRPRKAAS
GASAAASSPTAVGLEWRQVTVVNQLQRPLVLYPYSNLPFSVSVVGAGGQR
QAPGPALCLMSGDDTTAAVAAAVPVAGWDGTGQALHACGRGFEVRPGCPV
MLQIVPRPGAATGPLPLDAVKLGQVVSFEGIVALAHPSGGSPRTTPIPAL
IDLTGAPAAAAGPGGGGVVVDRANLAA
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mRNA from alignment at P-wetherbeei_contig11290:48..1628-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11290.1.1 ID=mRNA_P-wetherbeei_contig11290.1.1|Name=mRNA_P-wetherbeei_contig11290.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1581bp|location=Sequence derived from alignment at P-wetherbeei_contig11290:48..1628- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGCGGCTCGTGCCGCGAGAGCAGGACAAGCTGTTTGAGCTGACAGT
CAAGTTTGTGGGCACGGCCGGCGTCAGCATCTTGAAGGCGCGGCCATTGG
CAAGCCGCTTCACGGCGATCGAAGGGAGCCGGAGCACCCCGCGTGTTGTC
TTCGGGTCGCTCGTGCTCGAGAATAAGACGCAGGCGCTGCCGCTGGACTA
CCGCTTCGCGCTCCAGGCCTGCGGGCCGGTGAAGGAGGTCTCCCGGCGGC
TCTCGGGCATGCGGCCGGGCTCGGCGCAGCTGCTGGTGCTGGCGGCGGAG
CAGGGGCGGCTCAGCCCAGCCGGCACCGATGGCTCCACTGTCGCCGTCCG
CTATTGCTGCATTTTTAAGCGCTTCTTCGGGCTGTTCCGCCACACGATCC
TCATCGAAAACCTCAGCTCGCCCATCTCGGATGGCGCGCGCCGCGCGGCC
GCCGTTGCCCACACGGTGCGCGTCTTTGTGGACGACGGCACCATGCGCAT
CGACCTGCCGGCAGACCCGCTAGACGACGCCGGCAAGGCCGCGCCAGACG
ACGGGCGGCTGCGAGACGAGCGCGAGGCGCTGGCGCCGCCGCTCGAGACG
CTCCGTGTCGCCGCGCCGATTTTTGTCCGGCCGATGGCGGCGCGGTCCGG
TGGCGGCGGCGGAGAGGCCGCTGCCGGCGGCGGCGGCAAAGGCGGTGGCG
GCAAGGGCGGGGTTGACGGCCAGGCTGCTGCGGCAGCTGCGGCAGCGGCG
GCGACGGAAATCGGCAGCGGCGCTGCAGCGGTTCCTGCCGTGACGCCGAC
GGCGGTAATCGTGCGCAGGAGCAGCATAGGGCGCATCGCCAGCGTCGAAG
ACACCGACGCTGCGACTGCCGCTGGGACGGGCGGCGCGGGCGGCGTCGCG
GCGACGATAGTTTGTGCTACTCTGCCGCGTCCTTTAGGTCCTAAGGCGAC
GGTGGCTGGGATTCCGAAGGTGGAGGCGACCACCACAGTCGCGAGTGCAT
CTGGCGACGCCGCAGCAGCGGCGGCGGGGCGACCGCGAAAGGCGGCATCG
GGGGCGTCGGCGGCGGCGTCATCACCAACGGCCGTCGGCTTGGAGTGGCG
GCAGGTGACCGTTGTCAACCAGCTGCAGCGGCCGCTGGTCCTCTACCCGT
ACTCCAACCTTCCCTTCTCCGTCTCGGTGGTCGGGGCCGGCGGCCAGCGG
CAGGCGCCAGGGCCAGCCCTCTGCCTCATGTCCGGCGACGACACGACGGC
GGCCGTGGCAGCAGCCGTGCCCGTCGCCGGCTGGGACGGCACCGGCCAGG
CGCTTCACGCGTGCGGCCGCGGCTTCGAGGTGCGGCCCGGCTGCCCCGTC
ATGCTGCAGATCGTGCCGCGCCCCGGCGCCGCTACGGGGCCGCTGCCGCT
CGATGCTGTCAAGTTGGGGCAGGTGGTGTCGTTTGAGGGCATCGTGGCGC
TGGCGCACCCGTCCGGCGGCAGCCCGCGAACGACGCCGATTCCCGCGCTC
ATCGACCTGACCGGCGCGCCCGCGGCGGCGGCGGGGCCGGGCGGTGGCGG
AGTTGTCGTCGACCGAGCGAACCTGGCGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11290:48..1628-

>mRNA_P-wetherbeei_contig11290.1.1 ID=mRNA_P-wetherbeei_contig11290.1.1|Name=mRNA_P-wetherbeei_contig11290.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1581bp|location=Sequence derived from alignment at P-wetherbeei_contig11290:48..1628- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGCGGCTCGTGCCGCGAGAGCAGGACAAGCTGTTTGAGCTGACAGT
CAAGTTTGTGGGCACGGCCGGCGTCAGCATCTTGAAGGCGCGGCCATTGG
CAAGCCGCTTCACGGCGATCGAAGGGAGCCGGAGCACCCCGCGTGTTGTC
TTCGGGTCGCTCGTGCTCGAGAATAAGACGCAGGCGCTGCCGCTGGACTA
CCGCTTCGCGCTCCAGGCCTGCGGGCCGGTGAAGGAGGTCTCCCGGCGGC
TCTCGGGCATGCGGCCGGGCTCGGCGCAGCTGCTGGTGCTGGCGGCGGAG
CAGGGGCGGCTCAGCCCAGCCGGCACCGATGGCTCCACTGTCGCCGTCCG
CTATTGCTGCATTTTTAAGCGCTTCTTCGGGCTGTTCCGCCACACGATCC
TCATCGAAAACCTCAGCTCGCCCATCTCGGATGGCGCGCGCCGCGCGGCC
GCCGTTGCCCACACGGTGCGCGTCTTTGTGGACGACGGCACCATGCGCAT
CGACCTGCCGGCAGACCCGCTAGACGACGCCGGCAAGGCCGCGCCAGACG
ACGGGCGGCTGCGAGACGAGCGCGAGGCGCTGGCGCCGCCGCTCGAGACG
CTCCGTGTCGCCGCGCCGATTTTTGTCCGGCCGATGGCGGCGCGGTCCGG
TGGCGGCGGCGGAGAGGCCGCTGCCGGCGGCGGCGGCAAAGGCGGTGGCG
GCAAGGGCGGGGTTGACGGCCAGGCTGCTGCGGCAGCTGCGGCAGCGGCG
GCGACGGAAATCGGCAGCGGCGCTGCAGCGGTTCCTGCCGTGACGCCGAC
GGCGGTAATCGTGCGCAGGAGCAGCATAGGGCGCATCGCCAGCGTCGAAG
ACACCGACGCTGCGACTGCCGCTGGGACGGGCGGCGCGGGCGGCGTCGCG
GCGACGATAGTTTGTGCTACTCTGCCGCGTCCTTTAGGTCCTAAGGCGAC
GGTGGCTGGGATTCCGAAGGTGGAGGCGACCACCACAGTCGCGAGTGCAT
CTGGCGACGCCGCAGCAGCGGCGGCGGGGCGACCGCGAAAGGCGGCATCG
GGGGCGTCGGCGGCGGCGTCATCACCAACGGCCGTCGGCTTGGAGTGGCG
GCAGGTGACCGTTGTCAACCAGCTGCAGCGGCCGCTGGTCCTCTACCCGT
ACTCCAACCTTCCCTTCTCCGTCTCGGTGGTCGGGGCCGGCGGCCAGCGG
CAGGCGCCAGGGCCAGCCCTCTGCCTCATGTCCGGCGACGACACGACGGC
GGCCGTGGCAGCAGCCGTGCCCGTCGCCGGCTGGGACGGCACCGGCCAGG
CGCTTCACGCGTGCGGCCGCGGCTTCGAGGTGCGGCCCGGCTGCCCCGTC
ATGCTGCAGATCGTGCCGCGCCCCGGCGCCGCTACGGGGCCGCTGCCGCT
CGATGCTGTCAAGTTGGGGCAGGTGGTGTCGTTTGAGGGCATCGTGGCGC
TGGCGCACCCGTCCGGCGGCAGCCCGCGAACGACGCCGATTCCCGCGCTC
ATCGACCTGACCGGCGCGCCCGCGGCGGCGGCGGGGCCGGGCGGTGGCGG
AGTTGTCGTCGACCGAGCGAACCTGGCGGCG
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