mRNA_P-wetherbeei_contig1129.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig1129.1.1 vs. uniprot
Match: D8LM46_ECTSI (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM46_ECTSI) HSP 1 Score: 208 bits (530), Expect = 1.500e-65 Identity = 97/141 (68.79%), Postives = 122/141 (86.52%), Query Frame = 3 Query: 201 LLFEDIFSVNKLNPDGKKFDRVNRLACKGLTYETELLLDINCEIYSVMEGDKITFVLASTLDLDGAPDDGTYRMLDQGSEVTLADQYEYVMHGRVFKYNHVAENKVEVLASFGGLLMRLSGEQRHLASIRVDSRVYCLIRK 623 +LFEDIF V KLNPDGKKFDRVNRL CKG+TY+ +LLLD NC+IY V EG+++TFV+ASTLDL G PDDGTY+ L G EV+LAD+YEYVMHGRV++++ + KV+V ASFGGLLMRL+G+QRH+A+I VDSRV+CL+R+ Sbjct: 4 VLFEDIFEVGKLNPDGKKFDRVNRLECKGVTYDMDLLLDTNCDIYPVKEGERLTFVIASTLDLSGKPDDGTYKPL--GDEVSLADKYEYVMHGRVYRFDQQKDTKVQVFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRR 142
BLAST of mRNA_P-wetherbeei_contig1129.1.1 vs. uniprot
Match: A0A836CD84_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD84_9STRA) HSP 1 Score: 191 bits (486), Expect = 8.110e-59 Identity = 93/140 (66.43%), Postives = 113/140 (80.71%), Query Frame = 3 Query: 201 LLFEDIFSVNKLNPDGKKFDRVNRLACKGLTYETELLLDINCEIYSVMEGDKITFVLASTLDLDGAPDDGTYRMLDQGSEVTLADQYEYVMHGRVFKYNHVAENKVEVLASFGGLLMRLSGEQRHLASIRVDSRVYCLIR 620 +LFED+F V +LNP GKKFDRVNRLACK +T+E +LLLDIN EIY+V + DK++ VL+STL LDGAPDDGTYR ++ E TLA +YEYVMHGRVFKY + +V+V ASFGGLLMRL+GEQRHL I +D R+Y LIR Sbjct: 6 ILFEDLFQVTQLNPTGKKFDRVNRLACKAVTFEMDLLLDINSEIYTVRQNDKLSLVLSSTLALDGAPDDGTYRPIEH--EETLASRYEYVMHGRVFKYEQLTGTQVQVSASFGGLLMRLTGEQRHLVHISIDQRIYLLIR 143
BLAST of mRNA_P-wetherbeei_contig1129.1.1 vs. uniprot
Match: K3X3H5_GLOUD (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=29 Tax=Oomycota TaxID=4762 RepID=K3X3H5_GLOUD) HSP 1 Score: 177 bits (449), Expect = 2.700e-53 Identity = 84/141 (59.57%), Postives = 107/141 (75.89%), Query Frame = 3 Query: 204 LFEDIFSVNKLNPDGKKFDRVNRLACKGLTYETELLLDINCEIYSVMEGDKITFVLASTLDLDGAPDDGTYRMLDQGSEVTLADQYEYVMHGRVFKYNHVAENKVEVLASFGGLLMRLSGEQRHLASIRVDSRVYCLIRKQ 626 LFEDIF V ++NPDGKKFD+V R+ CKG++YE EL LDIN E+Y + + +K TF L STLDL+G PDDGTY +Q + TL D+Y+Y M+G+VF+Y+H N V + ASFGGLLM L GEQRHL I D+R+YCL+RKQ Sbjct: 5 LFEDIFEVRQVNPDGKKFDKVTRVVCKGVSYELELTLDINSEVYRLRQNEKFTFALVSTLDLEGKPDDGTY---NQSGKPTLLDRYDYGMYGKVFQYDHEGGNVVAIYASFGGLLMCLRGEQRHLHMIHNDTRIYCLLRKQ 142
BLAST of mRNA_P-wetherbeei_contig1129.1.1 vs. uniprot
Match: A0A7S2U8S9_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U8S9_9STRA) HSP 1 Score: 176 bits (445), Expect = 1.320e-52 Identity = 86/144 (59.72%), Postives = 109/144 (75.69%), Query Frame = 3 Query: 192 AQHLLFEDIFSVNKLNPDGKKFDRVNRLACKGLTYETELLLDINCEIYSVMEGDKITFVLASTLDLDGAPDDGTYRMLDQGSEVTLADQYEYVMHGRVFKYNHVAENKVEVLASFGGLLMRLSGEQRHLASIRVDSRVYCLIRK 623 A+ LFEDIF V LNP+GKKF+RVNRLA G T+E +LLLDINCEIY V+EGDK+T VLASTL LDG+PDD + +E TLAD Y+YVMHGR+F + + V + ASFGGLLMRL+G+QRHL+++ D R+Y L++K Sbjct: 5 ARVTLFEDIFEVTALNPEGKKFERVNRLAATGTTFECDLLLDINCEIYKVLEGDKMTLVLASTLSLDGSPDDH-FSFQPNSTEPTLADNYDYVMHGRIFDVGYKKDGVVVIAASFGGLLMRLTGDQRHLSNVMPDMRLYVLLKK 147
BLAST of mRNA_P-wetherbeei_contig1129.1.1 vs. uniprot
Match: A0A7S2E8I0_TRICV (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2E8I0_TRICV) HSP 1 Score: 173 bits (438), Expect = 1.420e-51 Identity = 88/144 (61.11%), Postives = 107/144 (74.31%), Query Frame = 3 Query: 192 AQHLLFEDIFSVNKLNPDGKKFDRVNRLACKGLTYETELLLDINCEIYSVMEGDKITFVLASTLDLDGAPDDGTYRMLDQGSEVTLADQYEYVMHGRVFKYNHVAENKVEVLASFGGLLMRLSGEQRHLASIRVDSRVYCLIRK 623 A+ LFEDIF V LNPD K FDRVNR+A G T++ +LLLDINCEIY++ EGDKIT VLASTL+LDG PDD + E TLAD YEYVMHGRVF + E + + ASFGGLLMRL+G+QRHL+S++ D R+Y LI+K Sbjct: 3 ARVTLFEDIFLVKTLNPDRKVFDRVNRIAADGTTFDCDLLLDINCEIYNLTEGDKITLVLASTLNLDGTPDDH-FSYAPNPGEPTLADNYEYVMHGRVFDVAYKGEGVIVIAASFGGLLMRLTGDQRHLSSVQPDMRLYVLIKK 145
BLAST of mRNA_P-wetherbeei_contig1129.1.1 vs. uniprot
Match: A0A024G723_9STRA (Uncharacterized protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024G723_9STRA) HSP 1 Score: 173 bits (439), Expect = 2.760e-51 Identity = 82/141 (58.16%), Postives = 105/141 (74.47%), Query Frame = 3 Query: 204 LFEDIFSVNKLNPDGKKFDRVNRLACKGLTYETELLLDINCEIYSVMEGDKITFVLASTLDLDGAPDDGTYRMLDQGSEVTLADQYEYVMHGRVFKYNHVAENKVEVLASFGGLLMRLSGEQRHLASIRVDSRVYCLIRKQ 626 LFEDIF V +LNP+GKKFD+V R+ KG++YE EL LDIN E++ + + DK TF L STLDL+G PDDG Y +Q + TL D+Y+Y M+G++F+Y H N V + ASFGGLLMRL GEQRHL + DSR+YCL+RKQ Sbjct: 41 LFEDIFEVRQLNPEGKKFDKVTRVVGKGVSYELELTLDINSEVWRLKKNDKFTFALVSTLDLEGKPDDGIY---NQSGKATLLDRYDYGMYGKIFQYEHEGGNNVAIYASFGGLLMRLRGEQRHLHLVHNDSRIYCLLRKQ 178
BLAST of mRNA_P-wetherbeei_contig1129.1.1 vs. uniprot
Match: A0A7S1BC37_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BC37_9STRA) HSP 1 Score: 170 bits (431), Expect = 1.530e-50 Identity = 83/140 (59.29%), Postives = 102/140 (72.86%), Query Frame = 3 Query: 204 LFEDIFSVNKLNPDGKKFDRVNRLACKGLTYETELLLDINCEIYSVMEGDKITFVLASTLDLDGAPDDGTYRMLDQGSEVTLADQYEYVMHGRVFKYNHVAENKVEVLASFGGLLMRLSGEQRHLASIRVDSRVYCLIRK 623 LFEDIF V +LNPDGKKF R+NR+ G T++ +LLLD N EIY + E +KIT VL+STL LDG PDDG Y DQ E T+AD YEYVMHGRVF + + + V SFGGLLMRL+G+QRHL ++R D R+Y LI+K Sbjct: 7 LFEDIFVVKQLNPDGKKFSRINRIQATGTTFQCDLLLDTNSEIYPIAEEEKITIVLSSTLSLDGRPDDGEY---DQSGEPTMADNYEYVMHGRVFDIKYKGDGVIAVHVSFGGLLMRLTGDQRHLENVRADERLYILIKK 143
BLAST of mRNA_P-wetherbeei_contig1129.1.1 vs. uniprot
Match: A0A7R9WD29_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WD29_9STRA) HSP 1 Score: 170 bits (431), Expect = 1.680e-50 Identity = 85/140 (60.71%), Postives = 103/140 (73.57%), Query Frame = 3 Query: 204 LFEDIFSVNKLNPDGKKFDRVNRLACKGLTYETELLLDINCEIYSVMEGDKITFVLASTLDLDGAPDDGTYRMLDQGSEVTLADQYEYVMHGRVFKYNHVAENKVEVLASFGGLLMRLSGEQRHLASIRVDSRVYCLIRK 623 LFEDIF V LNPD K FDRVNR+A G T+E +LLLD+NCEIY + E +KITFVLASTL+LDG PDD + E TLAD YEYVMHGR+F + E + + ASFGGLLMRL+G+QRHL+ I+ D R+Y LI+K Sbjct: 8 LFEDIFEVTTLNPDRKVFDRVNRIAATGTTFECDLLLDVNCEIYDLRESNKITFVLASTLNLDGTPDDH-FSYAPNPGEPTLADNYEYVMHGRIFDVAYKGEGVIVIAASFGGLLMRLTGDQRHLSQIQPDMRLYVLIKK 146
BLAST of mRNA_P-wetherbeei_contig1129.1.1 vs. uniprot
Match: B8CGC8_THAPS (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=2 Tax=Thalassiosirales TaxID=33847 RepID=B8CGC8_THAPS) HSP 1 Score: 170 bits (430), Expect = 2.880e-50 Identity = 86/152 (56.58%), Postives = 112/152 (73.68%), Query Frame = 3 Query: 174 VASRRMAQHLLFEDIFSVNKLNPDGKKFDRVNRLACKGLTYETELLLDINCEIYSVMEGDKITFVLASTLDLDGAPDDGT-YR-MLDQGSEVTLADQYEYVMHGRVFKYNHVAENKVEVLASFGGLLMRLSGEQRHLASIRVDSRVYCLIRK 623 +A+ A+ LFEDIF + LNP+GKKFD VNRL+ G T+E +LLLD NC+IYS++EG+K+T VLASTL+LDG PDD T Y +E+TLAD YEYVMHGRVF ++ + V + SFGGLL RL+G+QRHL+S+ D R+Y LI+K Sbjct: 1 MATATSARVTLFEDIFEITHLNPEGKKFDLVNRLSATGTTFECDLLLDYNCQIYSLLEGEKMTLVLASTLNLDGTPDDHTSYNPATSHNNELTLADNYEYVMHGRVFDVSYKKDGVVVIAISFGGLLCRLTGDQRHLSSVLPDMRLYVLIKK 152
BLAST of mRNA_P-wetherbeei_contig1129.1.1 vs. uniprot
Match: A0A7S1GJQ4_CYCTE (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GJQ4_CYCTE) HSP 1 Score: 169 bits (427), Expect = 7.690e-50 Identity = 84/144 (58.33%), Postives = 108/144 (75.00%), Query Frame = 3 Query: 192 AQHLLFEDIFSVNKLNPDGKKFDRVNRLACKGLTYETELLLDINCEIYSVMEGDKITFVLASTLDLDGAPDDGTYRMLDQGSEVTLADQYEYVMHGRVFKYNHVAENKVEVLASFGGLLMRLSGEQRHLASIRVDSRVYCLIRK 623 A+ LFEDIF V LNPDGKKF+RVNRLA G T+E +LLLD+NCEIY+V +GDKIT VLASTL LDG+P D + +E TLAD YEYVMHGR+F ++ + V + AS+GGLLMRL+G+QRHL+ + D R++ L++K Sbjct: 8 AKVTLFEDIFEVTALNPDGKKFERVNRLAATGTTFECDLLLDLNCEIYNVKDGDKITLVLASTLHLDGSPADH-FSFDPNATEPTLADNYEYVMHGRIFDVSYKKDGIVVISASYGGLLMRLTGDQRHLSQVLPDMRLFLLLKK 150 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1129.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig1129.1.1 >prot_P-wetherbeei_contig1129.1.1 ID=prot_P-wetherbeei_contig1129.1.1|Name=mRNA_P-wetherbeei_contig1129.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=151bp MAQHLLFEDIFSVNKLNPDGKKFDRVNRLACKGLTYETELLLDINCEIYSback to top mRNA from alignment at P-wetherbeei_contig1129:99..1787- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig1129.1.1 ID=mRNA_P-wetherbeei_contig1129.1.1|Name=mRNA_P-wetherbeei_contig1129.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1689bp|location=Sequence derived from alignment at P-wetherbeei_contig1129:99..1787- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig1129:99..1787- >mRNA_P-wetherbeei_contig1129.1.1 ID=mRNA_P-wetherbeei_contig1129.1.1|Name=mRNA_P-wetherbeei_contig1129.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig1129:99..1787- (Phaeothamnion wetherbeei SAG_119_79)back to top |