mRNA_P-wetherbeei_contig1128.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1128.2.1
Unique NamemRNA_P-wetherbeei_contig1128.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1128.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1128contigP-wetherbeei_contig1128:7118..7673 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FQC7
PFAMsEF-hand_1,EF-hand_5,EF-hand_7,EF-hand_8,fn3
Model size556
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.14e-05
EggNOG OGs29989@1|root,2RG9Y@2759|Eukaryota
DescriptionEF-hand domain pair
Cds size531
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185905.241345-UTR-P-wetherbeei_contig1128:7117..71421683185905.241345-UTR-P-wetherbeei_contig1128:7117..7142Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1128 7118..7142 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185905.254645-CDS-P-wetherbeei_contig1128:7142..76731683185905.254645-CDS-P-wetherbeei_contig1128:7142..7673Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1128 7143..7673 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1128.2.1prot_P-wetherbeei_contig1128.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1128 7143..7673 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1128.2.1

>prot_P-wetherbeei_contig1128.2.1 ID=prot_P-wetherbeei_contig1128.2.1|Name=mRNA_P-wetherbeei_contig1128.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=177bp
MFGKASTAKSALGFDRRPASVIGLHNAPAHGDDVDTPDRKRLAQQRFDEW
VRRKENFDRSLQFFAKLEYSRWDEERAVPEKPGADAGLPAFRTEEERRAA
REAGFFEVAVALAAIDRSLGFDLLQATAGATAARGTTADLADGHDGGGGG
GGDDGGGGEGSSARRRSVSAGGGRGRA
back to top

mRNA from alignment at P-wetherbeei_contig1128:7118..7673+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1128.2.1 ID=mRNA_P-wetherbeei_contig1128.2.1|Name=mRNA_P-wetherbeei_contig1128.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=556bp|location=Sequence derived from alignment at P-wetherbeei_contig1128:7118..7673+ (Phaeothamnion wetherbeei SAG_119_79)
CCCGTTCCCAAAATACGCTGGGAAGATGTTTGGCAAGGCGTCCACTGCCA
AGTCAGCGCTCGGCTTTGACAGAAGACCGGCATCCGTCATCGGGCTTCAC
AACGCTCCAGCGCACGGCGACGATGTGGATACTCCAGATCGCAAACGCCT
GGCGCAGCAGCGCTTCGACGAATGGGTGCGGAGAAAAGAGAATTTCGACC
GGAGCCTGCAATTCTTTGCAAAGCTTGAGTATTCTCGCTGGGACGAAGAG
CGGGCGGTGCCGGAGAAGCCGGGGGCGGACGCCGGACTGCCTGCCTTTCG
CACGGAAGAGGAGCGCCGCGCAGCGCGCGAGGCGGGCTTCTTCGAGGTCG
CTGTGGCATTGGCCGCGATCGACCGCTCGCTGGGATTCGACTTGCTTCAG
GCGACTGCAGGTGCAACAGCAGCTCGAGGCACAACCGCCGATTTGGCAGA
TGGCCACGACGGCGGTGGCGGTGGTGGCGGCGACGACGGCGGCGGCGGCG
AGGGCAGTTCGGCCAGGCGGCGCAGCGTCTCCGCTGGAGGCGGCCGCGGC
CGCGCC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1128:7118..7673+

>mRNA_P-wetherbeei_contig1128.2.1 ID=mRNA_P-wetherbeei_contig1128.2.1|Name=mRNA_P-wetherbeei_contig1128.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=531bp|location=Sequence derived from alignment at P-wetherbeei_contig1128:7118..7673+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTTGGCAAGGCGTCCACTGCCAAGTCAGCGCTCGGCTTTGACAGAAG
ACCGGCATCCGTCATCGGGCTTCACAACGCTCCAGCGCACGGCGACGATG
TGGATACTCCAGATCGCAAACGCCTGGCGCAGCAGCGCTTCGACGAATGG
GTGCGGAGAAAAGAGAATTTCGACCGGAGCCTGCAATTCTTTGCAAAGCT
TGAGTATTCTCGCTGGGACGAAGAGCGGGCGGTGCCGGAGAAGCCGGGGG
CGGACGCCGGACTGCCTGCCTTTCGCACGGAAGAGGAGCGCCGCGCAGCG
CGCGAGGCGGGCTTCTTCGAGGTCGCTGTGGCATTGGCCGCGATCGACCG
CTCGCTGGGATTCGACTTGCTTCAGGCGACTGCAGGTGCAACAGCAGCTC
GAGGCACAACCGCCGATTTGGCAGATGGCCACGACGGCGGTGGCGGTGGT
GGCGGCGACGACGGCGGCGGCGGCGAGGGCAGTTCGGCCAGGCGGCGCAG
CGTCTCCGCTGGAGGCGGCCGCGGCCGCGCC
back to top