mRNA_P-wetherbeei_contig1128.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1128.1.1
Unique NamemRNA_P-wetherbeei_contig1128.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1128.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1128contigP-wetherbeei_contig1128:5216..6423 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size999
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_000180.1
Cds size693
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185905.1768692-UTR-P-wetherbeei_contig1128:5215..55201683185905.1768692-UTR-P-wetherbeei_contig1128:5215..5520Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1128 5216..5520 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185905.191439-CDS-P-wetherbeei_contig1128:5520..55231683185905.191439-CDS-P-wetherbeei_contig1128:5520..5523Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1128 5521..5523 +
1683185905.2008622-CDS-P-wetherbeei_contig1128:5654..62681683185905.2008622-CDS-P-wetherbeei_contig1128:5654..6268Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1128 5655..6268 +
1683185905.2090209-CDS-P-wetherbeei_contig1128:6347..64231683185905.2090209-CDS-P-wetherbeei_contig1128:6347..6423Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1128 6348..6423 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1128.1.1prot_P-wetherbeei_contig1128.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1128 5521..6423 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1128.1.1

>prot_P-wetherbeei_contig1128.1.1 ID=prot_P-wetherbeei_contig1128.1.1|Name=mRNA_P-wetherbeei_contig1128.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=231bp
MTDSDAWDDAAILRAFDTALSEHRLAKDDGDGKAEEDGEETQSRPVKITR
ARDEHEKSFAVADSRFEQLLAKGTEAGKARTAAVAPVTSRPSRSVAAKPK
AEGVAGPWKPVDHDEEAAAAGATAPQSAQNGTWAAPMDPATVAAAAAGYD
YAAYYAGHNAYDAAYPGAWGPNSLPYMPAPLPGYFPPHHYARDGAMPQPP
PPPPHHGATRMQRRGRRWPAWRTTSSRTSCW
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mRNA from alignment at P-wetherbeei_contig1128:5216..6423+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1128.1.1 ID=mRNA_P-wetherbeei_contig1128.1.1|Name=mRNA_P-wetherbeei_contig1128.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1208bp|location=Sequence derived from alignment at P-wetherbeei_contig1128:5216..6423+ (Phaeothamnion wetherbeei SAG_119_79)
GCCCCACGGTGGAATGATGGCTTGGATCGGAGGCCTTCGCAGGTGGAGGA
GGACGAGCGAGCTGAGTGTTTCTCTCTGGGCTGTAAGCGGCTCTTCCACT
TCCCTTGCGGCTGCTTAACATGTACCAGATTGAGGTGAGGACAATACGGG
AATGATGGCTCCAAATGCAAAGTCGAAGTTGGTCCAGCCGTCCAACCCCA
CGTTCAGGGAAAGGTCCCAGGTCCCAGCCACGTGCTTCACCCAATATACT
GGCGGCGGGGTAAAAACCTCTTCGTGGCGTCTGCAACATACGGCCTGCCG
TTGCCATGGTGAGAGAGTCTTTTCCTAGCCGCTGAATTAGCAAGGACGCC
GTTCCTTTCCCGTTAAGTCCAGGCACTCCTCACGCCTTGTTTCTCAACTT
CGCACATCGCTCCTTCCCTCCACCCTCAACTGAAAGCAGACTGACAGCGA
CGCTTGGGACGACGCCGCCATCTTGCGCGCGTTTGATACTGCGCTGTCCG
AGCACCGCCTCGCAAAAGACGATGGCGATGGCAAAGCAGAGGAGGACGGG
GAAGAAACGCAGTCGAGGCCTGTTAAAATCACGCGGGCGAGGGACGAGCA
TGAGAAGAGCTTTGCCGTCGCCGACAGTCGCTTTGAGCAGCTGCTGGCGA
AGGGAACCGAGGCAGGAAAGGCGCGTACCGCAGCCGTAGCCCCCGTTACT
TCTCGCCCTTCACGGTCGGTAGCGGCGAAACCAAAGGCAGAAGGAGTCGC
CGGACCGTGGAAACCCGTGGACCACGACGAAGAAGCCGCCGCTGCGGGTG
CAACGGCGCCGCAGTCGGCTCAAAACGGAACGTGGGCCGCACCCATGGAT
CCTGCCACCGTCGCGGCCGCCGCCGCGGGCTACGATTACGCGGCATATTA
CGCAGGCCACAACGCCTACGATGCTGCATATCCCGGGGCGTGGGGGCCCA
ATTCGCTGCCATACATGCCGGCTCCATTACCTGGCTATTTCCCACCTCAC
CACTACGCAAGAGACGGAGCCATGCCGCAGCCCCCGCCTCCCCCGCCGCA
TCAGCGCTGGCCCGGCGGGCCGCCGCCGCCGCCGCCGCCGCCGCTGTCAA
TGCCGATGCCGCCGGGGCCGGCGCCACCGCAGTGGGGCTACCCGCATGCA
GCGGCGCGGCAGGCGCTGGCCGGCGTGGAGGACGACGAGCTCGCGGACCT
CCTGCTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1128:5216..6423+

>mRNA_P-wetherbeei_contig1128.1.1 ID=mRNA_P-wetherbeei_contig1128.1.1|Name=mRNA_P-wetherbeei_contig1128.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=693bp|location=Sequence derived from alignment at P-wetherbeei_contig1128:5216..6423+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACTGACAGCGACGCTTGGGACGACGCCGCCATCTTGCGCGCGTTTGA
TACTGCGCTGTCCGAGCACCGCCTCGCAAAAGACGATGGCGATGGCAAAG
CAGAGGAGGACGGGGAAGAAACGCAGTCGAGGCCTGTTAAAATCACGCGG
GCGAGGGACGAGCATGAGAAGAGCTTTGCCGTCGCCGACAGTCGCTTTGA
GCAGCTGCTGGCGAAGGGAACCGAGGCAGGAAAGGCGCGTACCGCAGCCG
TAGCCCCCGTTACTTCTCGCCCTTCACGGTCGGTAGCGGCGAAACCAAAG
GCAGAAGGAGTCGCCGGACCGTGGAAACCCGTGGACCACGACGAAGAAGC
CGCCGCTGCGGGTGCAACGGCGCCGCAGTCGGCTCAAAACGGAACGTGGG
CCGCACCCATGGATCCTGCCACCGTCGCGGCCGCCGCCGCGGGCTACGAT
TACGCGGCATATTACGCAGGCCACAACGCCTACGATGCTGCATATCCCGG
GGCGTGGGGGCCCAATTCGCTGCCATACATGCCGGCTCCATTACCTGGCT
ATTTCCCACCTCACCACTACGCAAGAGACGGAGCCATGCCGCAGCCCCCG
CCTCCCCCGCCGCATCATGGGGCTACCCGCATGCAGCGGCGCGGCAGGCG
CTGGCCGGCGTGGAGGACGACGAGCTCGCGGACCTCCTGCTGG
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