mRNA_P-wetherbeei_contig11269.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11269.1.1
Unique NamemRNA_P-wetherbeei_contig11269.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11269.1.1 vs. uniprot
Match: A0A1E4TIJ3_9ASCO (Uncharacterized protein n=1 Tax=Tortispora caseinolytica NRRL Y-17796 TaxID=767744 RepID=A0A1E4TIJ3_9ASCO)

HSP 1 Score: 103 bits (257), Expect = 2.820e-22
Identity = 49/104 (47.12%), Postives = 63/104 (60.58%), Query Frame = 1 
Query:  250 DSVCMACFDGTPTDRVNEIVFCDGCNCSLHQKCAGVTAVPEGEAPWFCDWCLFQLPKPEEGRCVLCPVKHGGLKRTECNNWCHLCCAVWTPGARILDPVVMSPV 561
            D+ C  C DG  ++  N IVFCDGC+ ++HQ C GV  +PEG+  W C  CL   PK     C+LCP  +G  KRT+CNNW HL CA+W P   I + V M P+
Sbjct:   36 DAKCAVCDDGE-SENNNAIVFCDGCDIAVHQDCYGVPFIPEGQ--WMCRRCLI-APKHNIS-CILCPNTNGAFKRTDCNNWAHLACAIWIPETTIGNLVYMEPI 134
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BLAST of mRNA_P-wetherbeei_contig11269.1.1 vs. uniprot
Match: A0A2T9YQW4_9FUNG (Uncharacterized protein n=1 Tax=Smittium simulii TaxID=133385 RepID=A0A2T9YQW4_9FUNG)

HSP 1 Score: 97.8 bits (242), Expect = 4.400e-20
Identity = 45/109 (41.28%), Postives = 60/109 (55.05%), Query Frame = 1 
Query:  250 DSVCMACFDGTPTDRVNEIVFCDGCNCSLHQKCAGVTAVPEGEAPWFCDWCLFQLPKPEEGRCVLCPVKHGGLKRTECNNWCHLCCAVWTPGARILDPVVMSPVDLSET 576
            D+ C  C +    D  N IVFCDGCN ++HQ C G+  +PEG+  W C  C+  L    +  C+ CP + G  K+T CN W HL CA+W P   I + V M P+D   T
Sbjct:  758 DAACSICGE-EECDNSNAIVFCDGCNLAVHQDCYGIPYIPEGQ--WLCRKCM--LSPGCDVSCIFCPHRGGAFKKTTCNQWAHLMCALWIPEVGISNTVYMEPIDSVNT 861
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BLAST of mRNA_P-wetherbeei_contig11269.1.1 vs. uniprot
Match: A0A3R7HJY4_9STRA (Uncharacterized protein n=7 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HJY4_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 7.040e-17
Identity = 37/88 (42.05%), Postives = 51/88 (57.95%), Query Frame = 1 
Query:  304 IVFCDGCNCSLHQKCAGVTAVPEGEAPWFCDWCLFQLPKPEEGRCVLCPVKH--GGLKRTECNNWCHLCCAVWTPGARILDPVVMSPV 561
            IV C+ C+ ++HQ C G+ AVPEG+ PW+CD+C      P +  C LCP+K      K+T    W H+ CA+W PG +  D   MS V
Sbjct: 1794 IVQCEKCSVAVHQYCYGINAVPEGDTPWYCDYCAEPSGSPADATCELCPLKRPKSAFKKTSEGKWVHVVCALWAPGVQFSDVERMSGV 1881
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BLAST of mRNA_P-wetherbeei_contig11269.1.1 vs. uniprot
Match: A0A6A3TAN1_9STRA (Chromodomain-helicase-DNA-binding protein 7 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3TAN1_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.300e-16
Identity = 42/104 (40.38%), Postives = 58/104 (55.77%), Query Frame = 1 
Query:  259 CMACF-DGTPTDRVNEIVFCDGCNCSLHQKCAGVTAVPEGEAPWFCDWCLFQLPKPEEGRCVLCPVKHG--GLKRTECNNWCHLCCAVWTPGARILDPVVMSPV 561
            C  CF D    D  + IV C+ C+ ++HQ C G+ +VPEG+ PWFCD+C+     P +  C LCP+K      K+T    W H+ CA+W PG +  D   MS V
Sbjct: 1841 CRVCFSDQGYLD--DPIVQCEKCSVAVHQYCYGIDSVPEGDEPWFCDFCVKPSGSPADATCELCPLKRAKSAFKKTVEGKWVHVVCALWAPGVQFSDVERMSGV 1942
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BLAST of mRNA_P-wetherbeei_contig11269.1.1 vs. uniprot
Match: H3HCY4_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HCY4_PHYRM)

HSP 1 Score: 87.4 bits (215), Expect = 1.720e-16
Identity = 38/88 (43.18%), Postives = 51/88 (57.95%), Query Frame = 1 
Query:  304 IVFCDGCNCSLHQKCAGVTAVPEGEAPWFCDWCLFQLPKPEEGRCVLCPVKH--GGLKRTECNNWCHLCCAVWTPGARILDPVVMSPV 561
            IV C+ C+ ++HQ C G+ AVPEG+ PWFCD+C      P +  C LCP+K      K+T    W H+ CA+W PG +  D   MS V
Sbjct: 1305 IVQCEKCSVAVHQYCYGIDAVPEGDTPWFCDFCAEPTGAPADTTCALCPLKRQKSAFKKTCEGKWVHVVCALWAPGVQFSDVERMSGV 1392
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BLAST of mRNA_P-wetherbeei_contig11269.1.1 vs. uniprot
Match: A0A225WA74_9STRA (Chromodomain protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WA74_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.760e-16
Identity = 39/88 (44.32%), Postives = 51/88 (57.95%), Query Frame = 1 
Query:  304 IVFCDGCNCSLHQKCAGVTAVPEGEAPWFCDWCLFQLPKPEEGRCVLCPVKHG--GLKRTECNNWCHLCCAVWTPGARILDPVVMSPV 561
            IV C+ C+ ++HQ C G+ AVPEG+ PWFCD+C      P E  C LCP+K      K+T    W H+ CA+W PG +  D   MS V
Sbjct: 1682 IVQCEKCSVAVHQYCYGINAVPEGDEPWFCDFCAQGSGSPVETTCELCPLKRSKSAFKKTIEGKWVHVVCALWAPGVQFSDVERMSGV 1769
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BLAST of mRNA_P-wetherbeei_contig11269.1.1 vs. uniprot
Match: A0A2P4X5A2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X5A2_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 2.320e-16
Identity = 38/88 (43.18%), Postives = 51/88 (57.95%), Query Frame = 1 
Query:  304 IVFCDGCNCSLHQKCAGVTAVPEGEAPWFCDWCLFQLPKPEEGRCVLCPVKHG--GLKRTECNNWCHLCCAVWTPGARILDPVVMSPV 561
            IV C+ C+ ++HQ C G+ +VPEG+ PWFCD+C      P E  C LCP+K      K+T    W H+ CA+W PG +  D   MS V
Sbjct: 1197 IVQCEKCSVAVHQYCYGIKSVPEGDEPWFCDFCAQPSGSPAETTCELCPLKRSKSAFKKTVEGKWVHVVCALWAPGVQFSDVERMSGV 1284
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BLAST of mRNA_P-wetherbeei_contig11269.1.1 vs. uniprot
Match: A0A8K1FFM6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FFM6_PYTOL)

HSP 1 Score: 86.7 bits (213), Expect = 3.260e-16
Identity = 43/120 (35.83%), Postives = 60/120 (50.00%), Query Frame = 1 
Query:  244 DGDSVCMACFDGTPTDRVNEIVFCDGCNCSLHQKCAGVTAVPEGEAPWFCDWCLFQLPKPEEGRCVLCPVKH--GGLKRTECNNWCHLCCAVWTPGARILDPVVMSPVDLSETAWAAKQT 597
            D D  C  CF  T +   + IV C+ C  ++HQ C G+  +PEG+ PWFCD+C           C LCP+K      K+T   +W H+ CA+W PG +  D   M   D+     A K+T
Sbjct: 1792 DEDMWCRVCFSDTGSSD-DPIVQCERCKVAVHQYCYGIEKIPEGDIPWFCDYCGDSDDSATNATCALCPLKRKTSAFKKTLEGDWVHVVCALWAPGVQFADVEHMK--DIKNVPDAIKET 1908
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BLAST of mRNA_P-wetherbeei_contig11269.1.1 vs. uniprot
Match: D7FV42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV42_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 1.130e-15
Identity = 46/117 (39.32%), Postives = 65/117 (55.56%), Query Frame = 1 
Query:  250 DSVCMACFDGTPTDRVN-EIVFCDGCNCSLHQKCAGVTAVPEGEAPWFCDWC--LFQLPKP------EEGRCVLCPVKHGGLKRTECNNWCHLCCAVWTPGARILDPVVMSPVDLSE 573
            D+VCM CFDG+  +  N  IV+CDGC+ S+H  C G+    + +A + CD C  L +L         +E  C LCP  HG LKRT C  + H+ C + +PG R+ D      +D+SE
Sbjct:  882 DAVCMVCFDGSTDESGNLTIVYCDGCDMSVHTDCYGIQ---DPKADFVCDRCTRLRELEAESKQTTGDEVNCFLCPNIHGALKRTTCGRFAHMTCLLMSPGVRMGDLKHKRRIDISE 995
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BLAST of mRNA_P-wetherbeei_contig11269.1.1 vs. uniprot
Match: A0A6H5LHH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LHH7_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.140e-15
Identity = 46/118 (38.98%), Postives = 65/118 (55.08%), Query Frame = 1 
Query:  250 DSVCMACFDGTPTDRVN-EIVFCDGCNCSLHQKCAGVTAVPEGEAPWFCDWCLFQLPKPEEG---------RCVLCPVKHGGLKRTECNNWCHLCCAVWTPGARILDPVVMSPVDLSE 573
            D+VCM CFDG+  +  N  IV+CDGC+ S+H  C G+    + +A + CD C  +L + E G          C LCP  HG LKRT C  + H+ C + +PG R+ D      +D+SE
Sbjct:  782 DAVCMVCFDGSTDESGNLTIVYCDGCDMSVHTDCYGIQ---DPKADFVCDRCT-RLRELEAGSKQMTGDEVNCFLCPNIHGALKRTTCGRFAHMTCLLMSPGVRMGDLKHKKRIDISE 895
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11269.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1E4TIJ3_9ASCO2.820e-2247.12Uncharacterized protein n=1 Tax=Tortispora caseino... [more]
A0A2T9YQW4_9FUNG4.400e-2041.28Uncharacterized protein n=1 Tax=Smittium simulii T... [more]
A0A3R7HJY4_9STRA7.040e-1742.05Uncharacterized protein n=7 Tax=Phytophthora kerno... [more]
A0A6A3TAN1_9STRA1.300e-1640.38Chromodomain-helicase-DNA-binding protein 7 n=8 Ta... [more]
H3HCY4_PHYRM1.720e-1643.18Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A225WA74_9STRA1.760e-1644.32Chromodomain protein (Fragment) n=1 Tax=Phytophtho... [more]
A0A2P4X5A2_9STRA2.320e-1643.18Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A8K1FFM6_PYTOL3.260e-1635.83Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
D7FV42_ECTSI1.130e-1539.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LHH7_9PHAE1.140e-1538.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11269contigP-wetherbeei_contig11269:1054..1991 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog27923.ML01283a-PA
Preferred nameBRPF1
PFAMsBromodomain,EPL1,PHD_2,PWWP,zf-HC5HC2H_2
Model size600
Max annot lvl33208|Metazoa
KEGG koko:K11348,ko:K11349,ko:K11350
Hectar predicted targeting categoryother localisation
GOsGO:0000123,GO:0000902,GO:0000904,GO:0001568,GO:0001570,GO:0001838,GO:0001841,GO:0001944,GO:0002009,GO:0002576,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005886,GO:0006325,GO:0006355,GO:0006464,GO:0006473,GO:0006475,GO:0006807,GO:0006810,GO:0006887,GO:0006928,GO:0006935,GO:0006996,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0008150,GO:0008152,GO:0008283,GO:0009605,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010646,GO:0016020,GO:0016043,GO:0016192,GO:0016331,GO:0016569,GO:0016570,GO:0016573,GO:0016604,GO:0016607,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0021915,GO:0022008,GO:0023051,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0031248,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032940,GO:0032989,GO:0032990,GO:0032991,GO:0033563,GO:0035148,GO:0035239,GO:0035295,GO:0035726,GO:0036211,GO:0040011,GO:0042127,GO:0042221,GO:0042330,GO:0042393,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043543,GO:0043966,GO:0043972,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045055,GO:0045893,GO:0045935,GO:0046903,GO:0048145,GO:0048468,GO:0048514,GO:0048518,GO:0048522,GO:0048583,GO:0048598,GO:0048646,GO:0048666,GO:0048667,GO:0048699,GO:0048729,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051252,GO:0051254,GO:0051276,GO:0051726,GO:0060255,GO:0060429,GO:0060562,GO:0061564,GO:0065007,GO:0070013,GO:0070775,GO:0070776,GO:0071704,GO:0071840,GO:0071944,GO:0072175,GO:0072358,GO:0072359,GO:0080090,GO:0097485,GO:0120036,GO:0120039,GO:1901564,GO:1901796,GO:1902493,GO:1902494,GO:1902531,GO:1902680,GO:1903506,GO:1903508,GO:1990234,GO:2000112,GO:2001141
Exons3
Evalue4.62e-25
EggNOG OGsCOG5141@1|root,KOG0955@2759|Eukaryota,38CQY@33154|Opisthokonta,3BEDI@33208|Metazoa
Descriptionhistone H3-K23 acetylation
Cds size600
COG categoryM
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185904.8987799-CDS-P-wetherbeei_contig11269:1053..12451683185904.8987799-CDS-P-wetherbeei_contig11269:1053..1245Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11269 1054..1245 -
1683185904.908681-CDS-P-wetherbeei_contig11269:1293..15751683185904.908681-CDS-P-wetherbeei_contig11269:1293..1575Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11269 1294..1575 -
1683185904.9160643-CDS-P-wetherbeei_contig11269:1865..19911683185904.9160643-CDS-P-wetherbeei_contig11269:1865..1991Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11269 1866..1991 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11269.1.1prot_P-wetherbeei_contig11269.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11269 1054..1991 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11269.1.1

>prot_P-wetherbeei_contig11269.1.1 ID=prot_P-wetherbeei_contig11269.1.1|Name=mRNA_P-wetherbeei_contig11269.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=200bp
QRRADDAVESRYREQVAMKHVCEALARGMRDQRHDFNHHKEEELPASWLV
STEGRPGPSSSAVTEGGRSGSGEAGSAAAAGDGDSVCMACFDGTPTDRVN
EIVFCDGCNCSLHQKCAGVTAVPEGEAPWFCDWCLFQLPKPEEGRCVLCP
VKHGGLKRTECNNWCHLCCAVWTPGARILDPVVMSPVDLSETAWAAKQTA
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mRNA from alignment at P-wetherbeei_contig11269:1054..1991-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11269.1.1 ID=mRNA_P-wetherbeei_contig11269.1.1|Name=mRNA_P-wetherbeei_contig11269.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=938bp|location=Sequence derived from alignment at P-wetherbeei_contig11269:1054..1991- (Phaeothamnion wetherbeei SAG_119_79)
CAACGGCGGGCGGACGATGCGGTCGAGTCGCGCTATCGCGAGCAGGTGGC
CATGAAGCACGTCTGCGAGGCGCTGGCGCGCGGCATGCGGGACCAGCGGC
ACGACTTCAACCACCACAAGGAGGAGGTAGGTATTTTCCGTCGTTTCGTA
GCTGCCGCCGCCTCGTTGCCGTTATGTTGTTGCTGCGGCATTACTCCTTG
CTGCAGTCGCTGTTGGTGCTGAAGCCATCGCAGGCGCTGTTGGTGCTGAA
GCCATCAGTGCTTCAGCGGTACTTTGAATGGTAGACTCTTCTACTTGCGG
CACTTTTGCTGCATCATCGATCCTGGAATCTGCTGGCGTCCTTTCTTTCT
GCTGTTCTGGTTATTAACCGAACTCTTCAAAAAATTCTATTGCTGCTTTC
CTTCGGCGGGGAGCAGGAGTTGCCCGCCAGCTGGCTGGTGTCCACAGAGG
GCCGGCCCGGGCCTTCGTCCTCGGCGGTCACTGAGGGCGGCCGCTCGGGC
AGTGGCGAAGCCGGATCGGCGGCAGCGGCGGGGGACGGCGACTCGGTGTG
CATGGCGTGCTTTGACGGGACGCCGACGGACCGCGTCAATGAGATCGTCT
TTTGCGACGGCTGCAACTGCAGCCTCCACCAGAAGTGCGCCGGCGTCACC
GCTGTACCGGAGGGGGAGGCGCCCTGGTTCTGCGACTGGTGCCTGTTCGT
AGAAATGGTGAAGAAGGAGAAGAACCGGCTGGGACTGACGGCGGAGCAGT
TGCCCAAGCCGGAGGAGGGGCGCTGCGTGCTGTGCCCCGTCAAGCACGGC
GGCCTCAAGCGGACTGAGTGCAACAACTGGTGCCACCTCTGCTGCGCCGT
CTGGACGCCCGGCGCCCGCATCCTCGATCCCGTGGTCATGTCTCCAGTCG
ACTTGTCGGAGACCGCCTGGGCGGCAAAGCAGACGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11269:1054..1991-

>mRNA_P-wetherbeei_contig11269.1.1 ID=mRNA_P-wetherbeei_contig11269.1.1|Name=mRNA_P-wetherbeei_contig11269.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=600bp|location=Sequence derived from alignment at P-wetherbeei_contig11269:1054..1991- (Phaeothamnion wetherbeei SAG_119_79)
CAACGGCGGGCGGACGATGCGGTCGAGTCGCGCTATCGCGAGCAGGTGGC
CATGAAGCACGTCTGCGAGGCGCTGGCGCGCGGCATGCGGGACCAGCGGC
ACGACTTCAACCACCACAAGGAGGAGGAGTTGCCCGCCAGCTGGCTGGTG
TCCACAGAGGGCCGGCCCGGGCCTTCGTCCTCGGCGGTCACTGAGGGCGG
CCGCTCGGGCAGTGGCGAAGCCGGATCGGCGGCAGCGGCGGGGGACGGCG
ACTCGGTGTGCATGGCGTGCTTTGACGGGACGCCGACGGACCGCGTCAAT
GAGATCGTCTTTTGCGACGGCTGCAACTGCAGCCTCCACCAGAAGTGCGC
CGGCGTCACCGCTGTACCGGAGGGGGAGGCGCCCTGGTTCTGCGACTGGT
GCCTGTTCCAGTTGCCCAAGCCGGAGGAGGGGCGCTGCGTGCTGTGCCCC
GTCAAGCACGGCGGCCTCAAGCGGACTGAGTGCAACAACTGGTGCCACCT
CTGCTGCGCCGTCTGGACGCCCGGCGCCCGCATCCTCGATCCCGTGGTCA
TGTCTCCAGTCGACTTGTCGGAGACCGCCTGGGCGGCAAAGCAGACGGCC
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