mRNA_P-wetherbeei_contig11259.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11259.1.1
Unique NamemRNA_P-wetherbeei_contig11259.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11259.1.1 vs. uniprot
Match: A0A835Z0G6_9STRA (HSF-type DNA-binding-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0G6_9STRA)

HSP 1 Score: 139 bits (351), Expect = 3.620e-41
Identity = 61/97 (62.89%), Postives = 77/97 (79.38%), Query Frame = 1
Query:    7 IPAFLAKAFDIFSNPEFENE--CGWSPNGESIIIKDAHNFAQRVLPKYFKHGNVQSFTRQLNMYDFRKVVNDPTDGEFTHALFKRGQRHLLPFIKRK 291
            + AFL+K FDIFSNP+F+ E  CGWS  G+++II +  +F+ RVLP+YFKHGN QSF RQLNMY+F+K V DPT+GEF H LF+RG RH+L  IKRK
Sbjct:    2 VSAFLSKTFDIFSNPQFQAEGICGWSAKGDAVIIHNLRDFSDRVLPQYFKHGNFQSFVRQLNMYNFKKTVADPTNGEFKHPLFRRGMRHVLHLIKRK 98          
BLAST of mRNA_P-wetherbeei_contig11259.1.1 vs. uniprot
Match: A0A4D9CUD5_9STRA (HSF_DOMAIN domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUD5_9STRA)

HSP 1 Score: 134 bits (336), Expect = 8.630e-35
Identity = 58/96 (60.42%), Postives = 70/96 (72.92%), Query Frame = 1
Query:    7 IPAFLAKAFDIFSNPEFENECGWSPNGESIIIKDAHNFAQRVLPKYFKHGNVQSFTRQLNMYDFRKVVNDPTDGEFTHALFKRGQRHLLPFIKRKV 294
            IP FL K ++IFS+PE ++ CGW   G +I+IK    FA RVLP+YFKH N QSF RQLNMYDF K V DP+ GEF H  F++G+R LLP IKRKV
Sbjct:   80 IPGFLTKTYEIFSSPEHKDLCGWGAGGGTIVIKKVPEFAARVLPRYFKHSNFQSFVRQLNMYDFHKTVQDPSHGEFRHEFFRQGRRDLLPLIKRKV 175          
BLAST of mRNA_P-wetherbeei_contig11259.1.1 vs. uniprot
Match: W7TL19_9STRA (Hsf-type dna-binding domain containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TL19_9STRA)

HSP 1 Score: 127 bits (320), Expect = 8.770e-35
Identity = 55/95 (57.89%), Postives = 68/95 (71.58%), Query Frame = 1
Query:    7 IPAFLAKAFDIFSNPEFENECGWSPNGESIIIKDAHNFAQRVLPKYFKHGNVQSFTRQLNMYDFRKVVNDPTDGEFTHALFKRGQRHLLPFIKRK 291
            IP FL K ++IFS+ E ++ CGW   G++I+IK    FA RVLP+YFKH N QSF RQLNMYDF K V DP+ GEF H  F++G+  LLP IKRK
Sbjct:  125 IPGFLTKTYEIFSSAEHKDLCGWGARGDTIVIKRVPEFAARVLPRYFKHSNFQSFVRQLNMYDFHKTVQDPSHGEFRHEFFRQGRPDLLPLIKRK 219          
BLAST of mRNA_P-wetherbeei_contig11259.1.1 vs. uniprot
Match: A0A7S2SUP5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUP5_9STRA)

HSP 1 Score: 122 bits (305), Expect = 3.840e-32
Identity = 55/97 (56.70%), Postives = 66/97 (68.04%), Query Frame = 1
Query:    1 GRIPAFLAKAFDIFSNPEFENECGWSPNGESIIIKDAHNFAQRVLPKYFKHGNVQSFTRQLNMYDFRKVVNDPTDGEFTHALFKRGQRHLLPFIKRK 291
            GR+P FL KAF+IFSN  F + CGW  NG++++I    +FA  VLPKYFKH N  SF RQLNMYDF K V +P   EF H  F+RG+  LL  IKRK
Sbjct:   51 GRVPGFLTKAFEIFSNKAFLDLCGWGRNGQTVVIHRISDFAAAVLPKYFKHSNYASFVRQLNMYDFHKTVANPQIAEFHHPYFQRGRPDLLQLIKRK 147          
BLAST of mRNA_P-wetherbeei_contig11259.1.1 vs. uniprot
Match: D7FNC1_ECTSI (Putative heat Shock transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNC1_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 7.300e-32
Identity = 51/97 (52.58%), Postives = 67/97 (69.07%), Query Frame = 1
Query:    1 GRIPAFLAKAFDIFSNPEFENECGWSPNGESIIIKDAHNFAQRVLPKYFKHGNVQSFTRQLNMYDFRKVVNDPTDGEFTHALFKRGQRHLLPFIKRK 291
            G +  FL KA+ IF  P + + CGW   G +++I+    FAQR+LP +F H N+QSF RQLNMY+FRKV+ DP+ GEF H LF++G  HLL  IKRK
Sbjct:   13 GNVAGFLVKAYQIFDTPAWSDLCGWGEGGNTVVIRKQVEFAQRILPLFFNHSNLQSFVRQLNMYNFRKVMQDPSSGEFKHDLFRKGNEHLLHKIKRK 109          
BLAST of mRNA_P-wetherbeei_contig11259.1.1 vs. uniprot
Match: A0A6H5L3K1_9PHAE (HSF_DOMAIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3K1_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 8.580e-30
Identity = 50/97 (51.55%), Postives = 66/97 (68.04%), Query Frame = 1
Query:    1 GRIPAFLAKAFDIFSNPEFENECGWSPNGESIIIKDAHNFAQRVLPKYFKHGNVQSFTRQLNMYDFRKVVNDPTDGEFTHALFKRGQRHLLPFIKRK 291
            G +  FL KA+ IF  P + + CGW   G +++I+    FAQ +LP +F H N+QSF RQLNMY+FRKV+ DP+ GEF H LF++G  HLL  IKRK
Sbjct:   44 GNVAGFLVKAYQIFDTPAWSDVCGWGEGGNTVVIRKQVEFAQHILPLFFNHSNLQSFVRQLNMYNFRKVMQDPSSGEFKHDLFRKGNGHLLHKIKRK 140          
BLAST of mRNA_P-wetherbeei_contig11259.1.1 vs. uniprot
Match: A0A4X2M2Y6_VOMUR (HSF_DOMAIN domain-containing protein n=1 Tax=Vombatus ursinus TaxID=29139 RepID=A0A4X2M2Y6_VOMUR)

HSP 1 Score: 111 bits (277), Expect = 4.460e-29
Identity = 55/107 (51.40%), Postives = 65/107 (60.75%), Query Frame = 1
Query:    1 GRIPAFLAKAFDIFSNPEFENECGWSPNGESIIIKDAHNFAQRVLPKYFKHGNVQSFTRQLNMYDFRKVVN---------DPTDGEFTHALFKRGQRHLLPFIKRKV 294
            G +PAFL K + +  +PE  +   WSPNG S  ++D   FA+ VLPKYFKH N+ SF RQLNMY FRKVV+         D  D EF H  F RG  HLL  IKRKV
Sbjct:   10 GPVPAFLTKLWTLVGDPETNHLICWSPNGTSFHVRDQGRFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVSIEQGGLVKPDRDDTEFQHLCFLRGHEHLLEHIKRKV 116          
BLAST of mRNA_P-wetherbeei_contig11259.1.1 vs. uniprot
Match: A0A4X2LW63_VOMUR (HSF_DOMAIN domain-containing protein n=1 Tax=Vombatus ursinus TaxID=29139 RepID=A0A4X2LW63_VOMUR)

HSP 1 Score: 109 bits (273), Expect = 1.030e-28
Identity = 54/105 (51.43%), Postives = 64/105 (60.95%), Query Frame = 1
Query:    7 IPAFLAKAFDIFSNPEFENECGWSPNGESIIIKDAHNFAQRVLPKYFKHGNVQSFTRQLNMYDFRKVVN---------DPTDGEFTHALFKRGQRHLLPFIKRKV 294
            +PAFL K + +  +PE  +   WSPNG S  ++D   FA+ VLPKYFKH N+ SF RQLNMY FRKVV+         D  D EF H  F RG  HLL  IKRKV
Sbjct:   18 VPAFLTKLWTLVGDPETNHLICWSPNGTSFHVRDQGRFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVSIEQGGLVKPDRDDTEFQHLCFLRGHEHLLEHIKRKV 122          
BLAST of mRNA_P-wetherbeei_contig11259.1.1 vs. uniprot
Match: A0A1V9Y6C3_9STRA (HSF_DOMAIN domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y6C3_9STRA)

HSP 1 Score: 114 bits (285), Expect = 6.040e-28
Identity = 52/96 (54.17%), Postives = 66/96 (68.75%), Query Frame = 1
Query:    7 IPAFLAKAFDIFSNPEFENECGWSPNGESIIIKDAHNFAQRVLPKYFKHGNVQSFTRQLNMYDFRKVVNDPTDGEFTHALFKRGQRHLLPFIKRKV 294
            +PAFL+K F+IFS P+F   CGW+P G++III D   F ++VLP++FKH N+ SF RQLNMY F K V D    EF H +F R +  LL  IKRKV
Sbjct:   20 LPAFLSKTFEIFSRPDFAAICGWNPAGDTIIIHDPDVFVKQVLPRFFKHRNLPSFVRQLNMYGFHKSVLDSNKREFRHKMFLRDKPQLLHMIKRKV 115          
BLAST of mRNA_P-wetherbeei_contig11259.1.1 vs. uniprot
Match: A0A6G0XW85_9STRA (HSF_DOMAIN domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XW85_9STRA)

HSP 1 Score: 112 bits (281), Expect = 2.510e-27
Identity = 51/96 (53.12%), Postives = 65/96 (67.71%), Query Frame = 1
Query:    7 IPAFLAKAFDIFSNPEFENECGWSPNGESIIIKDAHNFAQRVLPKYFKHGNVQSFTRQLNMYDFRKVVNDPTDGEFTHALFKRGQRHLLPFIKRKV 294
            +PAFL+K F+IFS P F + CGW+  G++III D   F ++VLP++FKH N+ SF RQLNMY F K V D    EF H +F R +  LL  IKRKV
Sbjct:   29 LPAFLSKTFEIFSTPSFSSICGWNATGDTIIIHDPDVFVKQVLPRFFKHRNLPSFVRQLNMYGFHKSVLDSNKREFRHKMFLRDKPELLRLIKRKV 124          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11259.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z0G6_9STRA3.620e-4162.89HSF-type DNA-binding-domain-containing protein (Fr... [more]
A0A4D9CUD5_9STRA8.630e-3560.42HSF_DOMAIN domain-containing protein n=1 Tax=Nanno... [more]
W7TL19_9STRA8.770e-3557.89Hsf-type dna-binding domain containing protein n=1... [more]
A0A7S2SUP5_9STRA3.840e-3256.70Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
D7FNC1_ECTSI7.300e-3252.58Putative heat Shock transcription factor n=1 Tax=E... [more]
A0A6H5L3K1_9PHAE8.580e-3051.55HSF_DOMAIN domain-containing protein n=1 Tax=Ectoc... [more]
A0A4X2M2Y6_VOMUR4.460e-2951.40HSF_DOMAIN domain-containing protein n=1 Tax=Vomba... [more]
A0A4X2LW63_VOMUR1.030e-2851.43HSF_DOMAIN domain-containing protein n=1 Tax=Vomba... [more]
A0A1V9Y6C3_9STRA6.040e-2854.17HSF_DOMAIN domain-containing protein n=1 Tax=Achly... [more]
A0A6G0XW85_9STRA2.510e-2753.13HSF_DOMAIN domain-containing protein n=1 Tax=Aphan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11259contigP-wetherbeei_contig11259:1365..1862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog164328.Phyra75445
PFAMsHSF_DNA-bind
Model size294
Max annot lvl4776|Peronosporales
KEGG koko:K09414
KEGG Pathwayko04212,ko05134,map04212,map05134
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.71e-28
EggNOG OGsCOG5169@1|root,KOG0627@2759|Eukaryota,3Q91H@4776|Peronosporales
Descriptionheat shock factor
Cds size294
COG categoryK
BRITEko00000,ko00001,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185904.4119809-CDS-P-wetherbeei_contig11259:1364..15291683185904.4119809-CDS-P-wetherbeei_contig11259:1364..1529Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11259 1365..1529 +
1683185904.4245973-CDS-P-wetherbeei_contig11259:1733..18621683185904.4245973-CDS-P-wetherbeei_contig11259:1733..1862Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11259 1734..1862 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11259.1.1prot_P-wetherbeei_contig11259.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11259 1365..1862 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11259.1.1

>prot_P-wetherbeei_contig11259.1.1 ID=prot_P-wetherbeei_contig11259.1.1|Name=mRNA_P-wetherbeei_contig11259.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=98bp
GRIPAFLAKAFDIFSNPEFENECGWSPNGESIIIKDAHNFAQRVLPKYFK
HGNVQSFTRQLNMYDFRKVVNDPTDGEFTHALFKRGQRHLLPFIKRKV
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mRNA from alignment at P-wetherbeei_contig11259:1365..1862+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11259.1.1 ID=mRNA_P-wetherbeei_contig11259.1.1|Name=mRNA_P-wetherbeei_contig11259.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig11259:1365..1862+ (Phaeothamnion wetherbeei SAG_119_79)
GGGAGAATACCAGCCTTCCTGGCGAAGGCTTTTGACATATTCAGCAACCC GGAGTTTGAGAATGAGTGCGGCTGGAGTCCCAATGGCGAATCGATCATCA TCAAAGATGCACACAATTTTGCCCAGCGCGTGCTGCCGAAATACTTCAAG CACGGCAACGTTCAGGTAAGAAACCTATCTTGTCAGGATGTTGGTATAGT TTCAGAAAGGAAACAGAGCCACCTGCGAGATTCCGTTCGGATTACCCCTG ATATCAGAAGCAGAGTGTTCCAACTGGAGCAAGAAGGTTAGATGCGCCGG AGGCAATGTCTGCAAATGCCAACATGCTTTTTCCACCGCCCACTCCCTTC CCTGCCGCAAAACCGGCAGAGCTTCACGCGGCAGCTGAATATGTACGACT TCCGTAAGGTGGTGAACGACCCGACGGACGGAGAATTCACCCACGCCCTT TTCAAGAGAGGGCAGCGCCACCTCCTGCCCTTCATCAAGCGGAAAGTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11259:1365..1862+

>mRNA_P-wetherbeei_contig11259.1.1 ID=mRNA_P-wetherbeei_contig11259.1.1|Name=mRNA_P-wetherbeei_contig11259.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=294bp|location=Sequence derived from alignment at P-wetherbeei_contig11259:1365..1862+ (Phaeothamnion wetherbeei SAG_119_79)
GGGAGAATACCAGCCTTCCTGGCGAAGGCTTTTGACATATTCAGCAACCC
GGAGTTTGAGAATGAGTGCGGCTGGAGTCCCAATGGCGAATCGATCATCA
TCAAAGATGCACACAATTTTGCCCAGCGCGTGCTGCCGAAATACTTCAAG
CACGGCAACGTTCAGAGCTTCACGCGGCAGCTGAATATGTACGACTTCCG
TAAGGTGGTGAACGACCCGACGGACGGAGAATTCACCCACGCCCTTTTCA
AGAGAGGGCAGCGCCACCTCCTGCCCTTCATCAAGCGGAAAGTA
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