mRNA_P-wetherbeei_contig11254.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11254.1.1
Unique NamemRNA_P-wetherbeei_contig11254.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11254.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11254contigP-wetherbeei_contig11254:362..1875 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1248
Hectar predicted targeting categorysignal peptide
Exons2
Cds size798
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185904.2215807-UTR-P-wetherbeei_contig11254:361..5401683185904.2215807-UTR-P-wetherbeei_contig11254:361..540Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11254 362..540 -
1683185904.2504828-UTR-P-wetherbeei_contig11254:1604..18751683185904.2504828-UTR-P-wetherbeei_contig11254:1604..1875Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11254 1605..1875 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185904.2318327-CDS-P-wetherbeei_contig11254:540..7851683185904.2318327-CDS-P-wetherbeei_contig11254:540..785Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11254 541..785 -
1683185904.2411368-CDS-P-wetherbeei_contig11254:1051..16041683185904.2411368-CDS-P-wetherbeei_contig11254:1051..1604Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11254 1052..1604 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11254.1.1prot_P-wetherbeei_contig11254.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11254 541..1604 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11254.1.1

>prot_P-wetherbeei_contig11254.1.1 ID=prot_P-wetherbeei_contig11254.1.1|Name=mRNA_P-wetherbeei_contig11254.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=266bp
MKLAAAAALGSFVMVAAAQSCSNACDSSHSSGGCSCDDTCDVWGDCCRDK
VFECGSAVLGNGTMTASALMPGGTAEYRFEDWESFLLARGLAARDAGACA
KAFTECDGRGCWDGECALPCAFDGAGPSDGCYAAERAALSVEHCGTLSSA
TLDCAKYPSVCCDGLRATLNVLASCGDARVGCVCDSGGNGKQYIENSVSK
ATGGAGCIVACVQYDDHYVAAATAVAEPCLAASTSATQRRQRRLAGKPCH
FFFPSTDLILGSACC*
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mRNA from alignment at P-wetherbeei_contig11254:362..1875-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11254.1.1 ID=mRNA_P-wetherbeei_contig11254.1.1|Name=mRNA_P-wetherbeei_contig11254.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1514bp|location=Sequence derived from alignment at P-wetherbeei_contig11254:362..1875- (Phaeothamnion wetherbeei SAG_119_79)
AGGAAGCAGCGAGGTGTGCAAAAGTATAATAATCCTGCTAGGATGCCAGT
TTACCGATCTCCCTCACCGTGCCTCGAGGGGCCTCGAGGTGCCAGCGAGA
TCTGTCGGCCTTTCTCCAAAGTTGCAACAAGAGGACTGACGTATTCCCCG
TTTCACCTCGAACCTCGAAATCAGCTCTTTTGTAAACACTTTGATGATTA
CCCCCCCGCCTTTCTGCTTTTTCAATCAGCTCCGTCGATGAGATCTTTGT
GAAGGCCGGCGGGTTGGAGGGATGAAGCTTGCCGCTGCCGCGGCTTTGGG
TTCGTTTGTGATGGTGGCAGCAGCCCAGAGCTGCAGCAATGCGTGCGATT
CCTCGCACAGCTCCGGCGGCTGCTCTTGTGACGATACTTGCGACGTTTGG
GGTGATTGCTGCAGGGACAAAGTCTTCGAATGCGGCAGCGCCGTCCTCGG
AAACGGCACCATGACGGCATCCGCTTTGATGCCCGGTGGCACCGCCGAAT
ACAGATTCGAAGACTGGGAATCCTTTCTTCTCGCCAGAGGCCTCGCCGCG
CGCGACGCTGGTGCTTGCGCTAAAGCTTTCACGGAATGTGACGGCCGCGG
GTGCTGGGATGGAGAATGTGCCTTGCCTTGCGCGTTTGACGGTGCCGGGC
CGAGCGACGGCTGCTATGCCGCGGAGAGGGCCGCTCTCAGCGTGGAACAC
TGCGGCACGCTTAGTTCGGCAACTCTCGACTGCGCCAAATACCCGTCCGT
CTGCTGCGACGGGCTGAGGGCCACGCTCAATGTCCTGGCGTCTTGCGGGG
ATGCCCGTGTCGGCTGTGTCTGCGGTAAATGGCGGACGGAATGCGGGCGG
AAAGAGAGGAAGGAGGGGCCGTTTCCGGTATCTTTTTGTTCATGGTGTTG
CTCCTCGCGAAATTTGTGCATTGCAAAACAAGAAACCCCGATATGCGCTG
CACGTTTGCCGGCGGCCAAGACTGCCCGCAATAGCGCTCAAGACAGTAGT
TGTTTCTGTCCGCATTGCATCTGATGGTTCCGACACTTTCGTTCCCAACC
TTCATTCCTCCCTCCCCCATTCCGCACATCCCTATCTCAGACTCGGGAGG
GAACGGCAAGCAGTACATTGAGAACTCCGTGTCGAAAGCGACTGGCGGCG
CCGGCTGCATCGTCGCGTGCGTGCAGTACGACGACCACTACGTCGCAGCG
GCGACGGCGGTCGCCGAGCCGTGCCTTGCCGCCAGCACGTCAGCCACCCA
GCGGAGGCAGCGGCGCCTTGCCGGTAAACCTTGCCATTTCTTCTTTCCAT
CAACCGATCTGATTTTAGGTTCTGCCTGTTGTTAGGGACGAAGAGTGTGG
TTGCCTGGCGCCGTATGTCCGGCCAGCCGTTTGATGCGGATTTAAAAGAA
CAGCGGCAGAGGGTGTGTTCCGGATCCCCCCCCCCCCCGGGATTGCGCTT
ACACAGCGCGTAGTCGGCGTCCGCTGTGAAAGCGTCTTGCGCTTCAACGC
TGGACGCAACTGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11254:362..1875-

>mRNA_P-wetherbeei_contig11254.1.1 ID=mRNA_P-wetherbeei_contig11254.1.1|Name=mRNA_P-wetherbeei_contig11254.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=798bp|location=Sequence derived from alignment at P-wetherbeei_contig11254:362..1875- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGCTTGCCGCTGCCGCGGCTTTGGGTTCGTTTGTGATGGTGGCAGC
AGCCCAGAGCTGCAGCAATGCGTGCGATTCCTCGCACAGCTCCGGCGGCT
GCTCTTGTGACGATACTTGCGACGTTTGGGGTGATTGCTGCAGGGACAAA
GTCTTCGAATGCGGCAGCGCCGTCCTCGGAAACGGCACCATGACGGCATC
CGCTTTGATGCCCGGTGGCACCGCCGAATACAGATTCGAAGACTGGGAAT
CCTTTCTTCTCGCCAGAGGCCTCGCCGCGCGCGACGCTGGTGCTTGCGCT
AAAGCTTTCACGGAATGTGACGGCCGCGGGTGCTGGGATGGAGAATGTGC
CTTGCCTTGCGCGTTTGACGGTGCCGGGCCGAGCGACGGCTGCTATGCCG
CGGAGAGGGCCGCTCTCAGCGTGGAACACTGCGGCACGCTTAGTTCGGCA
ACTCTCGACTGCGCCAAATACCCGTCCGTCTGCTGCGACGGGCTGAGGGC
CACGCTCAATGTCCTGGCGTCTTGCGGGGATGCCCGTGTCGGCTGTGTCT
GCGACTCGGGAGGGAACGGCAAGCAGTACATTGAGAACTCCGTGTCGAAA
GCGACTGGCGGCGCCGGCTGCATCGTCGCGTGCGTGCAGTACGACGACCA
CTACGTCGCAGCGGCGACGGCGGTCGCCGAGCCGTGCCTTGCCGCCAGCA
CGTCAGCCACCCAGCGGAGGCAGCGGCGCCTTGCCGGTAAACCTTGCCAT
TTCTTCTTTCCATCAACCGATCTGATTTTAGGTTCTGCCTGTTGTTAG
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