mRNA_P-wetherbeei_contig11237.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-wetherbeei_contig11237.1.1
Unique Name	mRNA_P-wetherbeei_contig11237.1.1
Type	mRNA
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)

Homology

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BLAST of mRNA_P-wetherbeei_contig11237.1.1 vs. uniprot
Match: A0A7S2BQG7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BQG7_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 3.850e-12
Identity = 34/52 (65.38%), Postives = 44/52 (84.62%), Query Frame = 1

Query:    1 GEWTEKEDRVLFDAQRRLGNRWSAIVKLLPGRSENAAKNRYNSTAVRKRWQR 156
            GEWT +EDR++F+AQ + GNRWS I KLLPGR+EN+ KNR+NS+A RK+W R
Sbjct:  114 GEWTPEEDRIVFEAQNQFGNRWSDIAKLLPGRTENSVKNRWNSSA-RKKWLR 164

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BLAST of mRNA_P-wetherbeei_contig11237.1.1 vs. uniprot
Match: A0A024TY11_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TY11_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 9.940e-11
Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 1

Query:    1 GEWTEKEDRVLFDAQRRLGNRWSAIVKLLPGRSENAAKNRYNSTAVRKRWQREHSG 168
            GEWT  ED V+F AQ+R+GNRWS I KLLPGR+ENA KNR+NS+A RK W  + SG
Sbjct:  370 GEWTNVEDEVMFRAQQRMGNRWSEIAKLLPGRTENAIKNRWNSSA-RKNWFSKQSG 424

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BLAST of mRNA_P-wetherbeei_contig11237.1.1 vs. uniprot
Match: A0A485L5I8_9STRA (Aste57867_16474 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L5I8_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.110e-10
Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 1

Query:    1 GEWTEKEDRVLFDAQRRLGNRWSAIVKLLPGRSENAAKNRYNSTAVRKRWQREHSG 168
            GEWT  ED V+F AQ+R+GNRWS I KLLPGR+ENA KNR+NS+A RK W  + SG
Sbjct:  408 GEWTAMEDEVMFRAQQRMGNRWSEIAKLLPGRTENAIKNRWNSSA-RKNWFSKQSG 462

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BLAST of mRNA_P-wetherbeei_contig11237.1.1 vs. uniprot
Match: A0A1V9YLZ6_9STRA (Myblike DNA-binding domain containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YLZ6_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.130e-10
Identity = 36/57 (63.16%), Postives = 44/57 (77.19%), Query Frame = 1

Query:    1 GEWTEKEDRVLFDAQRRLGNRWSAIVKLLPGRSENAAKNRYNSTAVRKRWQREHSGG 171
            GEWT  ED V+F AQ+R+GNRWS I KLLPGR+ENA KNR+NS+A RK W  + + G
Sbjct:  325 GEWTAMEDEVMFRAQQRMGNRWSEIAKLLPGRTENAIKNRWNSSA-RKNWFSKQAAG 380

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BLAST of mRNA_P-wetherbeei_contig11237.1.1 vs. uniprot
Match: A0A7S2R561_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R561_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.160e-10
Identity = 36/54 (66.67%), Postives = 45/54 (83.33%), Query Frame = 1

Query:    1 GEWTEKEDRVLFDAQRRLGNRWSAIVKLLPGRSENAAKNRYNSTAVRKRWQREH 162
            GEWT +ED+VLF+AQ  +GNRW  I KLLPGR+ENA KNR+NS+A RKRW +E+
Sbjct:  254 GEWTPEEDKVLFEAQLVVGNRWCEIAKLLPGRTENAVKNRWNSSA-RKRWLQEN 306

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BLAST of mRNA_P-wetherbeei_contig11237.1.1 vs. uniprot
Match: A0A836C844_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C844_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 3.250e-10
Identity = 31/46 (67.39%), Postives = 38/46 (82.61%), Query Frame = 1

Query:    7 WTEKEDRVLFDAQRRLGNRWSAIVKLLPGRSENAAKNRYNSTAVRK 144
            WT +ED V+F+AQ RLGNRW  I KLLPGR+ENA KNR+NS+A +K
Sbjct:  111 WTPEEDTVVFEAQLRLGNRWCEIAKLLPGRTENAVKNRFNSSAQKK 156

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BLAST of mRNA_P-wetherbeei_contig11237.1.1 vs. uniprot
Match: H6T5W7_LETCA (MybA (Fragment) n=1 Tax=Lethenteron camtschaticum TaxID=980415 RepID=H6T5W7_LETCA)

HSP 1 Score: 71.2 bits (173), Expect = 3.610e-10
Identity = 31/46 (67.39%), Postives = 39/46 (84.78%), Query Frame = 1

Query:    7 WTEKEDRVLFDAQRRLGNRWSAIVKLLPGRSENAAKNRYNSTAVRK 144
            WTE+EDRV+F+A +RLGNRW+ I KLLPGR++NA KN +NST  RK
Sbjct:   96 WTEEEDRVIFEAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 141

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BLAST of mRNA_P-wetherbeei_contig11237.1.1 vs. uniprot
Match: A0A1V9ZWF6_9STRA (Myblike DNA-binding domain containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZWF6_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 4.750e-10
Identity = 35/50 (70.00%), Postives = 41/50 (82.00%), Query Frame = 1

Query:    1 GEWTEKEDRVLFDAQRRLGNRWSAIVKLLPGRSENAAKNRYNSTAVRKRW 150
            GEWT  ED V+F AQ+R+GNRWS I KLLPGR+ENA KNR+NS+A RK W
Sbjct:  308 GEWTAVEDEVMFRAQQRMGNRWSEIAKLLPGRTENAIKNRWNSSA-RKNW 356

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BLAST of mRNA_P-wetherbeei_contig11237.1.1 vs. uniprot
Match: A0A8J2X3E5_9STRA (Hypothetical protein n=4 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X3E5_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 5.720e-10
Identity = 36/53 (67.92%), Postives = 42/53 (79.25%), Query Frame = 1

Query:    1 GEWTEKEDRVLFDAQRRLGNRWSAIVKLLPGRSENAAKNRYNSTAVRKRWQRE 159
            G+WT  ED VLF+ QR  GNRWS I KLLPGR+ENA KNR+NS+A RKRW R+
Sbjct:  203 GDWTPDEDAVLFETQRVHGNRWSEIAKLLPGRTENAVKNRWNSSA-RKRWLRD 254

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BLAST of mRNA_P-wetherbeei_contig11237.1.1 vs. uniprot
Match: F0Y9B4_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9B4_AURAN)

HSP 1 Score: 68.6 bits (166), Expect = 5.760e-10
Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = 1

Query:    1 GEWTEKEDRVLFDAQRRLGNRWSAIVKLLPGRSENAAKNRYNSTAVRKR 147
            G+WT +ED +LF+ QR  GNRWS I KLLPGR+ENA KNR+NS+A RKR
Sbjct:  107 GDWTPEEDNILFETQRVHGNRWSEIAKLLPGRTENAVKNRWNSSA-RKR 154

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig11237.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig11237.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A7S2BQG7_9STRA	3.850e-12	65.38	Hypothetical protein (Fragment) n=1 Tax=Dictyocha ...	[more]
A0A024TY11_9STRA	9.940e-11	66.07	Uncharacterized protein n=2 Tax=Aphanomyces invada...	[more]
A0A485L5I8_9STRA	1.110e-10	66.07	Aste57867_16474 protein n=1 Tax=Aphanomyces stella...	[more]
A0A1V9YLZ6_9STRA	2.130e-10	63.16	Myblike DNA-binding domain containing protein n=1 ...	[more]
A0A7S2R561_9STRA	2.160e-10	66.67	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
A0A836C844_9STRA	3.250e-10	67.39	Homeodomain-like protein (Fragment) n=1 Tax=Tribon...	[more]
H6T5W7_LETCA	3.610e-10	67.39	MybA (Fragment) n=1 Tax=Lethenteron camtschaticum ...	[more]
A0A1V9ZWF6_9STRA	4.750e-10	70.00	Myblike DNA-binding domain containing protein n=1 ...	[more]
A0A8J2X3E5_9STRA	5.720e-10	67.92	Hypothetical protein n=4 Tax=Pelagomonas calceolat...	[more]
F0Y9B4_AURAN	5.760e-10	67.35	Uncharacterized protein (Fragment) n=1 Tax=Aureoco...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig11237	contig	P-wetherbeei_contig11237:226..2125 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Seed ortholog	157072.XP_008873117.1
PFAMs	Myb_DNA-binding
Model size	1901
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K09420
KEGG Pathway	ko04151,ko05166,map04151,map05166
Hectar predicted targeting category	other localisation
Exons	1
Evalue	1.63e-11
EggNOG OGs	COG5147@1\|root,KOG0048@2759\|Eukaryota
Description	RNA polymerase II transcription regulator recruiting activity
Cds size	1899
COG category	ADK
BRITE	ko00000,ko00001,ko03000

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683185903.6582108-CDS-P-wetherbeei_contig11237:225..2124	1683185903.6582108-CDS-P-wetherbeei_contig11237:225..2124	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig11237 226..2124 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig11237.1.1	prot_P-wetherbeei_contig11237.1.1	Phaeothamnion wetherbeei SAG_119_79	polypeptide	P-wetherbeei_contig11237 226..2124 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-wetherbeei_contig11237:226..2125+
coding sequence from alignment at P-wetherbeei_contig11237:226..2125+

protein sequence of mRNA_P-wetherbeei_contig11237.1.1

>prot_P-wetherbeei_contig11237.1.1 ID=prot_P-wetherbeei_contig11237.1.1|Name=mRNA_P-wetherbeei_contig11237.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=633bp
GEWTEKEDRVLFDAQRRLGNRWSAIVKLLPGRSENAAKNRYNSTAVRKRW
QREHSGGAGGGSSGGGGGGDGNGAGASSPEAGSEESPTSGGGGSGSAGSA
GNGIDDEDDDSVGLSAAAAAALVPSPPVAALATDGALTVQLSDFADFGAP
QTGGSGGGSGGDGRTRNGTGGGIATSLIKAEPVAHADIGGAASGQQQHRQ
HQLRQHQQLQQPPQQPPPEDHADMIGHRERPSLSSILLSEDSAVTETDDA
AVDDDPKPQHRSDRRPVAAPMPTSGGGGSMSCTGGMGSNGGNGGMSGSGR
GGGMPLALPMPMPHDIASLPVTTLPVAPNYPGPPMHANPLPQSGRTPPTL
HDTAAAAPRQAPTLGWAGAVAPHGIPARLRPPLINTKAMSGGGPQHRPAA
SSAEMPPPQSPASALAAMRAKQHMQMQQQRYYQQQQQWYYQQQQQQQVRQ
MQQQQLQLPRTASWQQRRPKSPEDIAQQQSLVAAIQQIQRPPTQAMQTHL
RSRSQVRGPPANSRFRVKKRGRQPAGGGGHVGSGDSGGHYGGHGGSSSGV
AEHYAGEYAGHYAGASGGGGGGGGGGHDDDKGEQAAAAVTPVSAAMQRVG
DNMSMRPNEDVPLALLPYYKFLSTVAQRSIMHQ

mRNA from alignment at P-wetherbeei_contig11237:226..2125+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-wetherbeei_contig11237.1.1 ID=mRNA_P-wetherbeei_contig11237.1.1|Name=mRNA_P-wetherbeei_contig11237.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1900bp|location=Sequence derived from alignment at P-wetherbeei_contig11237:226..2125+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGAGTGGACGGAGAAGGAAGACCGCGTGCTTTTCGACGCGCAGCGCCG
CCTCGGCAACCGCTGGAGCGCCATTGTCAAGCTCCTGCCTGGCCGCTCCG
AGAACGCCGCCAAGAACCGCTACAATTCTACCGCCGTCCGCAAGCGCTGG
CAGCGGGAGCACAGCGGAGGTGCCGGCGGCGGCAGTAGCGGCGGTGGGGG
CGGCGGCGACGGCAACGGGGCGGGTGCATCGTCGCCAGAAGCGGGCAGCG
AGGAAAGCCCCACCTCCGGCGGCGGCGGCAGTGGCAGCGCCGGCAGTGCC
GGAAACGGGATAGACGATGAGGACGACGACAGTGTCGGCTTGTCGGCGGC
CGCGGCAGCCGCATTGGTGCCAAGCCCTCCGGTTGCGGCGTTGGCGACCG
ATGGTGCCCTGACGGTGCAGCTCTCTGATTTCGCCGACTTCGGCGCGCCT
CAAACCGGTGGCAGTGGTGGCGGCAGTGGTGGTGACGGCCGCACGAGAAA
TGGCACTGGAGGTGGCATCGCCACTTCTCTTATCAAGGCGGAGCCTGTGG
CCCATGCTGACATCGGCGGCGCCGCCAGCGGACAGCAGCAGCATCGTCAG
CACCAACTTCGGCAACATCAGCAGCTGCAGCAGCCACCGCAGCAGCCACC
ACCGGAAGACCACGCAGACATGATCGGCCACCGGGAGCGGCCGTCGCTCA
GCTCCATCCTGCTGTCCGAAGACTCTGCCGTGACGGAGACAGACGACGCA
GCTGTCGACGACGATCCGAAGCCGCAGCACCGCTCCGACCGGCGCCCAGT
GGCGGCGCCGATGCCCACAAGCGGCGGCGGTGGCAGCATGAGCTGCACTG
GCGGGATGGGTAGCAATGGGGGCAACGGCGGCATGAGCGGCAGCGGGCGG
GGCGGTGGCATGCCGCTGGCGTTGCCCATGCCGATGCCGCACGACATTGC
GTCGCTGCCTGTGACAACGCTGCCGGTGGCGCCAAACTACCCGGGACCCC
CGATGCACGCAAACCCGCTGCCGCAGTCCGGCCGGACGCCGCCGACGCTG
CACGACACCGCGGCGGCGGCGCCCAGGCAGGCTCCGACCCTCGGCTGGGC
CGGTGCGGTGGCGCCGCACGGCATTCCGGCCCGGCTGCGGCCGCCGTTGA
TTAACACCAAGGCGATGTCGGGAGGCGGGCCGCAGCACCGGCCGGCGGCA
TCATCGGCGGAGATGCCGCCGCCGCAGTCGCCGGCGTCGGCGCTGGCGGC
GATGCGCGCCAAGCAGCATATGCAGATGCAGCAGCAGCGGTACTACCAGC
AGCAGCAGCAGTGGTACTACCAGCAGCAGCAGCAGCAGCAAGTGCGCCAG
ATGCAGCAACAGCAGCTGCAGCTGCCGCGGACCGCCTCGTGGCAGCAGCG
GCGGCCCAAATCGCCGGAAGACATTGCCCAGCAGCAGTCGCTCGTCGCGG
CGATCCAGCAGATCCAGCGGCCGCCGACGCAGGCGATGCAGACGCACCTG
CGCTCGCGCTCCCAAGTCCGCGGCCCGCCCGCCAATTCCCGCTTCCGCGT
CAAGAAGCGCGGTCGCCAGCCCGCCGGCGGTGGCGGCCACGTTGGCAGCG
GTGACAGCGGCGGGCACTACGGCGGCCACGGCGGAAGCAGCAGCGGCGTC
GCCGAACACTATGCCGGCGAGTACGCCGGCCATTACGCTGGCGCCAGCGG
CGGTGGCGGTGGCGGTGGCGGCGGCGGCCACGATGACGACAAGGGTGAGC
AGGCAGCCGCTGCGGTGACGCCCGTATCGGCGGCGATGCAGCGCGTCGGC
GACAATATGTCGATGCGGCCCAATGAGGACGTGCCGCTGGCGTTGCTCCC
GTACTACAAGTTCCTGAGCACGGTCGCACAGCGCTCCATCATGCACCAGC

Coding sequence (CDS) from alignment at P-wetherbeei_contig11237:226..2125+

>mRNA_P-wetherbeei_contig11237.1.1 ID=mRNA_P-wetherbeei_contig11237.1.1|Name=mRNA_P-wetherbeei_contig11237.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1899bp|location=Sequence derived from alignment at P-wetherbeei_contig11237:226..2125+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGAGTGGACGGAGAAGGAAGACCGCGTGCTTTTCGACGCGCAGCGCCG
CCTCGGCAACCGCTGGAGCGCCATTGTCAAGCTCCTGCCTGGCCGCTCCG
AGAACGCCGCCAAGAACCGCTACAATTCTACCGCCGTCCGCAAGCGCTGG
CAGCGGGAGCACAGCGGAGGTGCCGGCGGCGGCAGTAGCGGCGGTGGGGG
CGGCGGCGACGGCAACGGGGCGGGTGCATCGTCGCCAGAAGCGGGCAGCG
AGGAAAGCCCCACCTCCGGCGGCGGCGGCAGTGGCAGCGCCGGCAGTGCC
GGAAACGGGATAGACGATGAGGACGACGACAGTGTCGGCTTGTCGGCGGC
CGCGGCAGCCGCATTGGTGCCAAGCCCTCCGGTTGCGGCGTTGGCGACCG
ATGGTGCCCTGACGGTGCAGCTCTCTGATTTCGCCGACTTCGGCGCGCCT
CAAACCGGTGGCAGTGGTGGCGGCAGTGGTGGTGACGGCCGCACGAGAAA
TGGCACTGGAGGTGGCATCGCCACTTCTCTTATCAAGGCGGAGCCTGTGG
CCCATGCTGACATCGGCGGCGCCGCCAGCGGACAGCAGCAGCATCGTCAG
CACCAACTTCGGCAACATCAGCAGCTGCAGCAGCCACCGCAGCAGCCACC
ACCGGAAGACCACGCAGACATGATCGGCCACCGGGAGCGGCCGTCGCTCA
GCTCCATCCTGCTGTCCGAAGACTCTGCCGTGACGGAGACAGACGACGCA
GCTGTCGACGACGATCCGAAGCCGCAGCACCGCTCCGACCGGCGCCCAGT
GGCGGCGCCGATGCCCACAAGCGGCGGCGGTGGCAGCATGAGCTGCACTG
GCGGGATGGGTAGCAATGGGGGCAACGGCGGCATGAGCGGCAGCGGGCGG
GGCGGTGGCATGCCGCTGGCGTTGCCCATGCCGATGCCGCACGACATTGC
GTCGCTGCCTGTGACAACGCTGCCGGTGGCGCCAAACTACCCGGGACCCC
CGATGCACGCAAACCCGCTGCCGCAGTCCGGCCGGACGCCGCCGACGCTG
CACGACACCGCGGCGGCGGCGCCCAGGCAGGCTCCGACCCTCGGCTGGGC
CGGTGCGGTGGCGCCGCACGGCATTCCGGCCCGGCTGCGGCCGCCGTTGA
TTAACACCAAGGCGATGTCGGGAGGCGGGCCGCAGCACCGGCCGGCGGCA
TCATCGGCGGAGATGCCGCCGCCGCAGTCGCCGGCGTCGGCGCTGGCGGC
GATGCGCGCCAAGCAGCATATGCAGATGCAGCAGCAGCGGTACTACCAGC
AGCAGCAGCAGTGGTACTACCAGCAGCAGCAGCAGCAGCAAGTGCGCCAG
ATGCAGCAACAGCAGCTGCAGCTGCCGCGGACCGCCTCGTGGCAGCAGCG
GCGGCCCAAATCGCCGGAAGACATTGCCCAGCAGCAGTCGCTCGTCGCGG
CGATCCAGCAGATCCAGCGGCCGCCGACGCAGGCGATGCAGACGCACCTG
CGCTCGCGCTCCCAAGTCCGCGGCCCGCCCGCCAATTCCCGCTTCCGCGT
CAAGAAGCGCGGTCGCCAGCCCGCCGGCGGTGGCGGCCACGTTGGCAGCG
GTGACAGCGGCGGGCACTACGGCGGCCACGGCGGAAGCAGCAGCGGCGTC
GCCGAACACTATGCCGGCGAGTACGCCGGCCATTACGCTGGCGCCAGCGG
CGGTGGCGGTGGCGGTGGCGGCGGCGGCCACGATGACGACAAGGGTGAGC
AGGCAGCCGCTGCGGTGACGCCCGTATCGGCGGCGATGCAGCGCGTCGGC
GACAATATGTCGATGCGGCCCAATGAGGACGTGCCGCTGGCGTTGCTCCC
GTACTACAAGTTCCTGAGCACGGTCGCACAGCGCTCCATCATGCACCAG