mRNA_P-wetherbeei_contig11229.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11229.1.1
Unique NamemRNA_P-wetherbeei_contig11229.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11229.1.1 vs. uniprot
Match: A0A537C1Z1_9PROT (Tetratricopeptide repeat protein n=3 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537C1Z1_9PROT)

HSP 1 Score: 157 bits (398), Expect = 2.030e-47
Identity = 72/95 (75.79%), Postives = 88/95 (92.63%), Query Frame = 1
Query:    1 VASNPQDANYNNLYAYTMRKGPNPNMNLVFKYYNEALRIDPNHRNAHEYIGEAYLMVGNVAKAKEHLAVLDRLCTFGCEEYSDLKKAIAGYEARK 285
            +A NP +A+Y+NLYAY++RKGPNP+M+LVFK+YNEALRIDP+HR AHEY+GEAYLMVGNVAKAKEHL+VLD+LC F C+EYSDLKKAIA YE ++
Sbjct:   59 LARNPDNADYHNLYAYSIRKGPNPDMSLVFKHYNEALRIDPDHRGAHEYLGEAYLMVGNVAKAKEHLSVLDKLCFFPCDEYSDLKKAIADYERKQ 153          
BLAST of mRNA_P-wetherbeei_contig11229.1.1 vs. uniprot
Match: A0A1F4F581_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 TaxID=1797505 RepID=A0A1F4F581_9PROT)

HSP 1 Score: 154 bits (389), Expect = 3.590e-46
Identity = 71/95 (74.74%), Postives = 85/95 (89.47%), Query Frame = 1
Query:    1 VASNPQDANYNNLYAYTMRKGPNPNMNLVFKYYNEALRIDPNHRNAHEYIGEAYLMVGNVAKAKEHLAVLDRLCTFGCEEYSDLKKAIAGYEARK 285
            VA +P +A Y+NLYAY+MRKGPNPNM+LVFK+YNEAL++DP HR AHEYIGEA+L +GN+AKAKEHLA LD LC FGCEE+SDLKKAIA YEA++
Sbjct:   61 VAKDPGNAGYHNLYAYSMRKGPNPNMDLVFKHYNEALKLDPKHRGAHEYIGEAFLKIGNLAKAKEHLARLDSLCFFGCEEFSDLKKAIAEYEAKQ 155          
BLAST of mRNA_P-wetherbeei_contig11229.1.1 vs. uniprot
Match: A0A3N7J2W8_9BURK (Tetratricopeptide repeat protein n=2 Tax=Albitalea terrae TaxID=2496871 RepID=A0A3N7J2W8_9BURK)

HSP 1 Score: 149 bits (376), Expect = 2.750e-44
Identity = 69/96 (71.88%), Postives = 84/96 (87.50%), Query Frame = 1
Query:    1 VASNPQDANYNNLYAYTMRKGPNPNMNLVFKYYNEALRIDPNHRNAHEYIGEAYLMVGNVAKAKEHLAVLDRLCTFGCEEYSDLKKAIAGYEARKK 288
            +A+ P +A+Y+NLYAY+MRKGPNP+M+LVFK+YNEALRI+P H  AHEYIGEAYL VG++AKAKEHLA L+++C FGCEEYSDLKK IA YEA  K
Sbjct:   55 LAAKPNNADYHNLYAYSMRKGPNPDMDLVFKHYNEALRINPKHTGAHEYIGEAYLQVGDLAKAKEHLAALNKICFFGCEEYSDLKKDIAEYEASHK 150          
BLAST of mRNA_P-wetherbeei_contig11229.1.1 vs. uniprot
Match: A0A1F3YTB5_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RBG_16_66_20 TaxID=1797479 RepID=A0A1F3YTB5_9PROT)

HSP 1 Score: 146 bits (368), Expect = 1.800e-43
Identity = 66/92 (71.74%), Postives = 80/92 (86.96%), Query Frame = 1
Query:    1 VASNPQDANYNNLYAYTMRKGPNPNMNLVFKYYNEALRIDPNHRNAHEYIGEAYLMVGNVAKAKEHLAVLDRLCTFGCEEYSDLKKAIAGYE 276
            VA  PQ+A+Y+NLYAY+MRKG  P+M+LVF++YNEALR+DP HR AHEYIGEAYLM GN+AKAKEHLA LD LCTFGC EY++LK+ +A YE
Sbjct:   24 VAGTPQNADYHNLYAYSMRKGAKPSMDLVFRHYNEALRLDPRHRGAHEYIGEAYLMSGNLAKAKEHLAQLDNLCTFGCAEYTELKREVAAYE 115          
BLAST of mRNA_P-wetherbeei_contig11229.1.1 vs. uniprot
Match: UPI000BBC9C35 (hypothetical protein n=1 Tax=Polaromonas sp. AET17H-212 TaxID=1977061 RepID=UPI000BBC9C35)

HSP 1 Score: 146 bits (368), Expect = 5.280e-43
Identity = 66/96 (68.75%), Postives = 84/96 (87.50%), Query Frame = 1
Query:    1 VASNPQDANYNNLYAYTMRKGPNPNMNLVFKYYNEALRIDPNHRNAHEYIGEAYLMVGNVAKAKEHLAVLDRLCTFGCEEYSDLKKAIAGYEARKK 288
            +A++PQ+A+Y+NLYAY++RKGP+P+M LVFK+Y EALR++P HR AHEY+GEAYLMV +  KAK+HLA LD+LC   CEEYSDLKKAIA YEAR+K
Sbjct:   60 LAASPQNADYHNLYAYSIRKGPSPDMALVFKHYGEALRLNPKHRGAHEYVGEAYLMVNDATKAKQHLAALDKLCFLPCEEYSDLKKAIAAYEARRK 155          
BLAST of mRNA_P-wetherbeei_contig11229.1.1 vs. uniprot
Match: UPI0019CB5F6E (Tetratricopeptide repeat protein n=1 Tax=Rhizobacter sp. TaxID=1909292 RepID=UPI0019CB5F6E)

HSP 1 Score: 145 bits (367), Expect = 1.180e-42
Identity = 66/93 (70.97%), Postives = 79/93 (84.95%), Query Frame = 1
Query:    1 VASNPQDANYNNLYAYTMRKGPNPNMNLVFKYYNEALRIDPNHRNAHEYIGEAYLMVGNVAKAKEHLAVLDRLCTFGCEEYSDLKKAIAGYEA 279
            +A  P +A+Y+NLYAY++RKGPNP+M  VF +Y +ALRIDP HR AHEY GEAYLM G++ KAKEHLA LDRLCTFGCEEY+DLKKA+A YEA
Sbjct:   75 LAGTPNNADYHNLYAYSLRKGPNPDMTAVFSHYADALRIDPKHRGAHEYSGEAYLMAGDLPKAKEHLAALDRLCTFGCEEYTDLKKAVAQYEA 167          
BLAST of mRNA_P-wetherbeei_contig11229.1.1 vs. uniprot
Match: UPI0016644548 (tetratricopeptide repeat protein n=1 Tax=Polaromonas eurypsychrophila TaxID=1614635 RepID=UPI0016644548)

HSP 1 Score: 145 bits (365), Expect = 1.600e-42
Identity = 66/96 (68.75%), Postives = 84/96 (87.50%), Query Frame = 1
Query:    1 VASNPQDANYNNLYAYTMRKGPNPNMNLVFKYYNEALRIDPNHRNAHEYIGEAYLMVGNVAKAKEHLAVLDRLCTFGCEEYSDLKKAIAGYEARKK 288
            + S+PQ+A+Y+NLYAY++RKG NPNM+LVFK+Y EALRI+P HR AHEY+GEAYLMV +V KAK+HLA LD+LC   CEE++DLKKAIA YEA++K
Sbjct:   62 LRSSPQNADYHNLYAYSIRKGANPNMDLVFKHYGEALRINPKHRGAHEYVGEAYLMVNDVPKAKQHLAALDKLCFMPCEEHTDLKKAIAAYEAKRK 157          
BLAST of mRNA_P-wetherbeei_contig11229.1.1 vs. uniprot
Match: A0A1F4E410_9PROT (Uncharacterized protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4E410_9PROT)

HSP 1 Score: 144 bits (364), Expect = 2.210e-42
Identity = 67/96 (69.79%), Postives = 83/96 (86.46%), Query Frame = 1
Query:    1 VASNPQDANYNNLYAYTMRKGPNPNMNLVFKYYNEALRIDPNHRNAHEYIGEAYLMVGNVAKAKEHLAVLDRLCTFGCEEYSDLKKAIAGYEARKK 288
            +A +P +A+Y+NLYAY +RKGPNP+++ VFK+Y+EALRI PNHR AHEYIGEAYL+ GN+AKAKEHL+ LDR+C FGCEEYS LKKAIA  EA +K
Sbjct:   62 LARDPANADYHNLYAYALRKGPNPSLDQVFKHYHEALRISPNHRGAHEYIGEAYLLQGNLAKAKEHLSALDRMCFFGCEEYSMLKKAIAESEATRK 157          
BLAST of mRNA_P-wetherbeei_contig11229.1.1 vs. uniprot
Match: A0A521VH85_9PROT (Tetratricopeptide repeat protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521VH85_9PROT)

HSP 1 Score: 143 bits (360), Expect = 9.510e-42
Identity = 65/92 (70.65%), Postives = 81/92 (88.04%), Query Frame = 1
Query:    1 VASNPQDANYNNLYAYTMRKGPNPNMNLVFKYYNEALRIDPNHRNAHEYIGEAYLMVGNVAKAKEHLAVLDRLCTFGCEEYSDLKKAIAGYE 276
            +  +P++A+Y+NLYAY +RKGPNP+++LVFK+Y+EALRIDP HR AHEYIGEAYLM GN+AKAKEHL  LDR+C FGCEEY+ LKKAIA +E
Sbjct:   62 LGKDPRNADYHNLYAYAIRKGPNPSLDLVFKHYHEALRIDPKHRGAHEYIGEAYLMQGNLAKAKEHLDALDRMCFFGCEEYTLLKKAIADFE 153          
BLAST of mRNA_P-wetherbeei_contig11229.1.1 vs. uniprot
Match: A0A521YPW7_9PROT (Tetratricopeptide repeat protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521YPW7_9PROT)

HSP 1 Score: 142 bits (358), Expect = 1.220e-41
Identity = 66/92 (71.74%), Postives = 80/92 (86.96%), Query Frame = 1
Query:    1 VASNPQDANYNNLYAYTMRKGPNPNMNLVFKYYNEALRIDPNHRNAHEYIGEAYLMVGNVAKAKEHLAVLDRLCTFGCEEYSDLKKAIAGYE 276
            V  +P +A+Y+N+YAYT+RKG +P+M+LVFK+YNEALRIDPNHR AHEY+GEAYLMV N A+AKEHLA LD+LC F C E+SDLKKAIA YE
Sbjct:   47 VQKDPGNADYHNMYAYTIRKGAHPDMSLVFKHYNEALRIDPNHRGAHEYLGEAYLMVNNPARAKEHLAALDKLCFFPCSEHSDLKKAIAEYE 138          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11229.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A537C1Z1_9PROT2.030e-4775.79Tetratricopeptide repeat protein n=3 Tax=Betaprote... [more]
A0A1F4F581_9PROT3.590e-4674.74Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A3N7J2W8_9BURK2.750e-4471.88Tetratricopeptide repeat protein n=2 Tax=Albitalea... [more]
A0A1F3YTB5_9PROT1.800e-4371.74Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
UPI000BBC9C355.280e-4368.75hypothetical protein n=1 Tax=Polaromonas sp. AET17... [more]
UPI0019CB5F6E1.180e-4270.97Tetratricopeptide repeat protein n=1 Tax=Rhizobact... [more]
UPI00166445481.600e-4268.75tetratricopeptide repeat protein n=1 Tax=Polaromon... [more]
A0A1F4E410_9PROT2.210e-4269.79Uncharacterized protein n=2 Tax=unclassified Betap... [more]
A0A521VH85_9PROT9.510e-4270.65Tetratricopeptide repeat protein n=1 Tax=Betaprote... [more]
A0A521YPW7_9PROT1.220e-4171.74Tetratricopeptide repeat protein n=1 Tax=Betaprote... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11229contigP-wetherbeei_contig11229:6..296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog522306.CAP2UW1_1845
Model size291
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.6e-27
EggNOG OGsCOG5010@1|root,COG5010@2|Bacteria,1R0QI@1224|Proteobacteria,2VX62@28216|Betaproteobacteria,1KR08@119066|unclassified Betaproteobacteria
DescriptionCOG0457 FOG TPR repeat
Cds size291
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185903.2124236-CDS-P-wetherbeei_contig11229:5..2961683185903.2124236-CDS-P-wetherbeei_contig11229:5..296Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11229 6..296 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11229.1.1prot_P-wetherbeei_contig11229.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11229 6..296 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11229.1.1

>prot_P-wetherbeei_contig11229.1.1 ID=prot_P-wetherbeei_contig11229.1.1|Name=mRNA_P-wetherbeei_contig11229.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=97bp
VASNPQDANYNNLYAYTMRKGPNPNMNLVFKYYNEALRIDPNHRNAHEYI
GEAYLMVGNVAKAKEHLAVLDRLCTFGCEEYSDLKKAIAGYEARKK*
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mRNA from alignment at P-wetherbeei_contig11229:6..296+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11229.1.1 ID=mRNA_P-wetherbeei_contig11229.1.1|Name=mRNA_P-wetherbeei_contig11229.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=291bp|location=Sequence derived from alignment at P-wetherbeei_contig11229:6..296+ (Phaeothamnion wetherbeei SAG_119_79)
GTGGCATCGAATCCGCAGGACGCCAACTACAACAACCTCTACGCCTACAC CATGCGCAAGGGCCCGAACCCCAACATGAACCTTGTGTTCAAGTACTACA ACGAGGCGCTCAGGATCGACCCGAACCACCGCAATGCCCACGAGTACATC GGCGAGGCCTACCTCATGGTCGGCAATGTCGCCAAGGCGAAGGAGCACCT CGCCGTGCTCGACCGCCTTTGCACCTTCGGGTGCGAAGAGTACTCGGACC TCAAGAAGGCGATTGCCGGGTACGAAGCAAGGAAGAAATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11229:6..296+

>mRNA_P-wetherbeei_contig11229.1.1 ID=mRNA_P-wetherbeei_contig11229.1.1|Name=mRNA_P-wetherbeei_contig11229.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=291bp|location=Sequence derived from alignment at P-wetherbeei_contig11229:6..296+ (Phaeothamnion wetherbeei SAG_119_79)
GTGGCATCGAATCCGCAGGACGCCAACTACAACAACCTCTACGCCTACAC
CATGCGCAAGGGCCCGAACCCCAACATGAACCTTGTGTTCAAGTACTACA
ACGAGGCGCTCAGGATCGACCCGAACCACCGCAATGCCCACGAGTACATC
GGCGAGGCCTACCTCATGGTCGGCAATGTCGCCAAGGCGAAGGAGCACCT
CGCCGTGCTCGACCGCCTTTGCACCTTCGGGTGCGAAGAGTACTCGGACC
TCAAGAAGGCGATTGCCGGGTACGAAGCAAGGAAGAAATAG
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