mRNA_P-wetherbeei_contig11228.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11228.1.1
Unique NamemRNA_P-wetherbeei_contig11228.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11228.1.1 vs. uniprot
Match: D8LL66_ECTSI (FYVE, RhoGEF and PH domain containing 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL66_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 4.390e-12
Identity = 40/77 (51.95%), Postives = 49/77 (63.64%), Query Frame = 2
Query:  329 MADSSSSSCVLCDMPFTLTNRRHHCRACFMLVCSKCSARTYKL------GDSSKGRTTQ-QRVCEACFASLDATRQV 538
            M D SS SC+LCD  FT TNR HHCRAC  LVCS CS+  +KL      G  S GR    +RVC+ C+ +L AT++V
Sbjct:    1 MDDDSSPSCLLCDALFTFTNRGHHCRACLKLVCSACSSNMWKLEAGRSRGYGSAGRRAAFKRVCDKCYGTLVATKEV 77          
BLAST of mRNA_P-wetherbeei_contig11228.1.1 vs. uniprot
Match: Q38DK7_TRYB2 (Zinc finger protein, putative n=4 Tax=Trypanozoon TaxID=39700 RepID=Q38DK7_TRYB2)

HSP 1 Score: 67.4 bits (163), Expect = 8.810e-10
Identity = 34/69 (49.28%), Postives = 44/69 (63.77%), Query Frame = 2
Query:  317 RGE-WMADSSSSSCVLCDMPFTLTNRRHHCRACFMLVCSKCSARTYKLGDSSKGRTTQQRVCEACFASL 520
            +GE W  DS  S C  C++ F+LT RRHHCR C ++VCSKCS   Y++  SS    T +RVC  CF +L
Sbjct:    7 KGENWQKDSDVSGCCKCNVSFSLTTRRHHCRKCGLVVCSKCSR--YRINLSSHDSDTPKRVCRHCFHTL 73          
BLAST of mRNA_P-wetherbeei_contig11228.1.1 vs. uniprot
Match: A0A7J7J309_BUGNE (PLEKHF2 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7J309_BUGNE)

HSP 1 Score: 66.2 bits (160), Expect = 1.730e-9
Identity = 28/66 (42.42%), Postives = 42/66 (63.64%), Query Frame = 2
Query:  326 WMADSSSSSCVLCDMPFTLTNRRHHCRACFMLVCSKCSARTYKLGDSSKGRTTQQRVCEACFASLD 523
            W+ DS +++C++C+ PFT+ NRRHHCR C  +VC  CS + +     +K     QRVC+ CF  L+
Sbjct:  149 WIPDSEANACMICNTPFTILNRRHHCRKCGKVVCDDCSKQRWSFPQQAKQ---PQRVCDNCFKELE 211          
BLAST of mRNA_P-wetherbeei_contig11228.1.1 vs. uniprot
Match: UPI00084F4797 (zinc finger FYVE domain-containing protein 16-like n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=UPI00084F4797)

HSP 1 Score: 63.9 bits (154), Expect = 2.270e-9
Identity = 30/62 (48.39%), Postives = 41/62 (66.13%), Query Frame = 2
Query:  326 WMADSSSSSCVLCDMPFTLTNRRHHCRACFMLVCSKCSARTYKLGDSSKGRTTQQRVCEACF 511
            W+ DS +SSC+LCD+ FT+  RRHHCRAC  ++C+KC    Y+L    +G     RVC +CF
Sbjct:   46 WVPDSDASSCMLCDVKFTVLKRRHHCRACGKVLCNKCCNMKYRL--EYQGNI-DSRVCVSCF 104          
BLAST of mRNA_P-wetherbeei_contig11228.1.1 vs. uniprot
Match: UPI001EFF615C (zinc finger FYVE domain-containing protein 16 isoform X1 n=16 Tax=Vespa TaxID=7443 RepID=UPI001EFF615C)

HSP 1 Score: 67.0 bits (162), Expect = 2.960e-9
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 2
Query:  326 WMADSSSSSCVLCDMPFTLTNRRHHCRACFMLVCSKCSARTYKLGDSSKGRTTQQRVCEACF 511
            W+ DS++SSC+LCD+ FT+  RRHHCRAC  ++CSKC    YKL    +G     RVC AC+
Sbjct:  764 WIPDSNASSCMLCDLKFTVLKRRHHCRACGKVLCSKCCNMKYKL--EYQGNI-HSRVCVACY 822          
BLAST of mRNA_P-wetherbeei_contig11228.1.1 vs. uniprot
Match: A0A834NXL7_VESPE (FYVE-type domain-containing protein n=9 Tax=Vespula TaxID=7451 RepID=A0A834NXL7_VESPE)

HSP 1 Score: 66.6 bits (161), Expect = 4.010e-9
Identity = 32/62 (51.61%), Postives = 41/62 (66.13%), Query Frame = 2
Query:  326 WMADSSSSSCVLCDMPFTLTNRRHHCRACFMLVCSKCSARTYKLGDSSKGRTTQQRVCEACF 511
            W+ DS +SSC+LCD+ FT+  RRHHCRAC  ++CSKC    YKL    +G     RVC AC+
Sbjct:  767 WIPDSDASSCMLCDLKFTVLKRRHHCRACGKVLCSKCCNMKYKL--EYQGNI-HSRVCVACY 825          
BLAST of mRNA_P-wetherbeei_contig11228.1.1 vs. uniprot
Match: A0A7S2S812_9STRA (Hypothetical protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S812_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 4.010e-9
Identity = 25/67 (37.31%), Postives = 43/67 (64.18%), Query Frame = 2
Query:  311 PSRGEWMADSSSSSCVLCDMPFTLTNRRHHCRACFMLVCSKCSARTYKLGDSSKGRTTQQRVCEACF 511
            P +  W+ D    SC +CD+ F+++NRRHHCR+C  + C+ C+ ++ +L      +  +QRVCE+C+
Sbjct:   18 PDQSHWVKDEFVLSCGVCDVKFSMSNRRHHCRSCGEVFCAACTGKSTELPHLGYPKGQRQRVCESCY 84          
BLAST of mRNA_P-wetherbeei_contig11228.1.1 vs. uniprot
Match: UPI00073D713C (zinc finger FYVE domain-containing protein 9 isoform X1 n=6 Tax=Polistes dominula TaxID=743375 RepID=UPI00073D713C)

HSP 1 Score: 65.1 bits (157), Expect = 1.340e-8
Identity = 31/62 (50.00%), Postives = 41/62 (66.13%), Query Frame = 2
Query:  326 WMADSSSSSCVLCDMPFTLTNRRHHCRACFMLVCSKCSARTYKLGDSSKGRTTQQRVCEACF 511
            W+ DS +SSC+LCD+ FT+  RRHHCRAC  ++CSKC    Y+L    +G     RVC AC+
Sbjct:  785 WIPDSDASSCMLCDIKFTVLKRRHHCRACGKVLCSKCCNMKYRL--EYQGNI-HSRVCVACY 843          
BLAST of mRNA_P-wetherbeei_contig11228.1.1 vs. uniprot
Match: A0A8J4UZ22_9MYCE (FYVE-type domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4UZ22_9MYCE)

HSP 1 Score: 64.7 bits (156), Expect = 1.460e-8
Identity = 31/72 (43.06%), Postives = 41/72 (56.94%), Query Frame = 2
Query:  296 ESPPTPSRGEWMADSSSSSCVLCDMPFTLTNRRHHCRACFMLVCSKCSARTYKLGDSSKGRTTQQRVCEACF 511
            + PP   + EW+ DS S+SC +C  PFT  NRRHHCR C  L C++C +    L     G T + +VC  CF
Sbjct:   94 QDPPVIKKPEWVPDSFSNSCEMCQTPFTFFNRRHHCRRCGHLFCAECCSLNVSLPQEF-GYTERVKVCSKCF 164          
BLAST of mRNA_P-wetherbeei_contig11228.1.1 vs. uniprot
Match: A0A835ZPU8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPU8_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.010e-8
Identity = 26/45 (57.78%), Postives = 31/45 (68.89%), Query Frame = 2
Query:  317 RGEWMADSSSSSCVLCDMPFTLTNRRHHCRACFMLVCSKCSARTY 451
            +  WM D  S  C+LCD  FT TNRRHHCR+CF LVCS CS + +
Sbjct:   31 KATWMDDKDSEVCLLCDQAFTFTNRRHHCRSCFKLVCSSCSGQQF 75          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11228.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL66_ECTSI4.390e-1251.95FYVE, RhoGEF and PH domain containing 6 n=1 Tax=Ec... [more]
Q38DK7_TRYB28.810e-1049.28Zinc finger protein, putative n=4 Tax=Trypanozoon ... [more]
A0A7J7J309_BUGNE1.730e-942.42PLEKHF2 n=1 Tax=Bugula neritina TaxID=10212 RepID=... [more]
UPI00084F47972.270e-948.39zinc finger FYVE domain-containing protein 16-like... [more]
UPI001EFF615C2.960e-951.61zinc finger FYVE domain-containing protein 16 isof... [more]
A0A834NXL7_VESPE4.010e-951.61FYVE-type domain-containing protein n=9 Tax=Vespul... [more]
A0A7S2S812_9STRA4.010e-937.31Hypothetical protein (Fragment) n=1 Tax=labyrinthu... [more]
UPI00073D713C1.340e-850.00zinc finger FYVE domain-containing protein 9 isofo... [more]
A0A8J4UZ22_9MYCE1.460e-843.06FYVE-type domain-containing protein n=1 Tax=Polysp... [more]
A0A835ZPU8_9STRA2.010e-857.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11228contigP-wetherbeei_contig11228:1365..2187 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog5691.EAN77113
PFAMsFYVE
Model size663
Max annot lvl5653|Kinetoplastida
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.3e-11
EggNOG OGsKOG1786@1|root,KOG1786@2759|Eukaryota,3XWS9@5653|Kinetoplastida
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-24_002760.1
Descriptionaggrephagy
Cds size375
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185903.1656172-UTR-P-wetherbeei_contig11228:1364..16501683185903.1656172-UTR-P-wetherbeei_contig11228:1364..1650Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11228 1365..1650 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185903.1786134-CDS-P-wetherbeei_contig11228:1650..17691683185903.1786134-CDS-P-wetherbeei_contig11228:1650..1769Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11228 1651..1769 +
1683185903.1871736-CDS-P-wetherbeei_contig11228:1931..21871683185903.1871736-CDS-P-wetherbeei_contig11228:1931..2187Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11228 1932..2187 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11228.1.1prot_P-wetherbeei_contig11228.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11228 1651..2187 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11228.1.1

>prot_P-wetherbeei_contig11228.1.1 ID=prot_P-wetherbeei_contig11228.1.1|Name=mRNA_P-wetherbeei_contig11228.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=125bp
MSQESPPTPSRGEWMADSSSSSCVLCDMPFTLTNRRHHCRACFMLVCSKC
SARTYKLGDSSKGRTTQQRVCEACFASLDATRQVETTTSASAATASGSPT
TQRSVLFMVHVLEARGPGLGRAGEA
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mRNA from alignment at P-wetherbeei_contig11228:1365..2187+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11228.1.1 ID=mRNA_P-wetherbeei_contig11228.1.1|Name=mRNA_P-wetherbeei_contig11228.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=823bp|location=Sequence derived from alignment at P-wetherbeei_contig11228:1365..2187+ (Phaeothamnion wetherbeei SAG_119_79)
AGGACACTTTGAATAACGATAGCGAGGAAAACTGAGAGGTTTCCTGCCTT TCCTGCCTCTTTTGCACGCCCGGTGCTCCGACAAGGCGCCATAGCTAGCG TCTCTACGGGTCTCTACGCTTTTGCAGAGGTGATCTTCCGCAGCTCCTTC CGTCTGCATCCCCCGATGCGCTGAAGGGCTTCAGCGTGGCTGCCCACGAA TACTGAGGGGCAGAAATTGAAATCGCGAGTCAAGCAGGGAAGCGGGAGGA TACCGTTGGACAGCGCCGCGAAGTATTGCGAAAAAAATGTCGCAGGAAAG TCCACCAACGCCCTCCCGGGGAGAGTGGATGGCGGACTCGTCATCTTCTT CCTGCGTTCTCTGCGATATGCCCTTCACATTAACGAATAGACGACACCAC TGCAGGCAAGATAACCCCCCGTGCACCTTTCCCTTCACTTTTCCCTCGTT ATTTGGCCCGTTGCGGGCGCTTGCCGTCGATCAGAGTCCTTCCTCTTGCT TCCAAGATGTTGGTCTTGGCATTTGAAGTCCTTTTTCCGTCCCTGGAAAT CAATGTACCCCTGCCAGGGCATGCTTCATGCTCGTCTGCAGTAAGTGCAG CGCCCGCACCTACAAGCTCGGCGACAGCTCCAAGGGACGCACTACGCAGC AGCGGGTCTGCGAGGCGTGCTTCGCCTCGCTCGACGCTACACGCCAGGTC GAGACGACAACGTCGGCGTCGGCCGCCACCGCTTCCGGCAGCCCCACCAC ACAACGCTCCGTCCTTTTCATGGTGCACGTGCTCGAGGCGAGGGGGCCAG GCCTCGGGCGGGCCGGCGAGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11228:1365..2187+

>mRNA_P-wetherbeei_contig11228.1.1 ID=mRNA_P-wetherbeei_contig11228.1.1|Name=mRNA_P-wetherbeei_contig11228.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=375bp|location=Sequence derived from alignment at P-wetherbeei_contig11228:1365..2187+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGCAGGAAAGTCCACCAACGCCCTCCCGGGGAGAGTGGATGGCGGA
CTCGTCATCTTCTTCCTGCGTTCTCTGCGATATGCCCTTCACATTAACGA
ATAGACGACACCACTGCAGGGCATGCTTCATGCTCGTCTGCAGTAAGTGC
AGCGCCCGCACCTACAAGCTCGGCGACAGCTCCAAGGGACGCACTACGCA
GCAGCGGGTCTGCGAGGCGTGCTTCGCCTCGCTCGACGCTACACGCCAGG
TCGAGACGACAACGTCGGCGTCGGCCGCCACCGCTTCCGGCAGCCCCACC
ACACAACGCTCCGTCCTTTTCATGGTGCACGTGCTCGAGGCGAGGGGGCC
AGGCCTCGGGCGGGCCGGCGAGGCG
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