mRNA_P-wetherbeei_contig11227.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11227.1.1
Unique NamemRNA_P-wetherbeei_contig11227.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11227.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11227contigP-wetherbeei_contig11227:213..2016 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1806
Hectar predicted targeting categoryother localisation
Exons1
Cds size1605
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185903.1288042-UTR-P-wetherbeei_contig11227:212..4111683185903.1288042-UTR-P-wetherbeei_contig11227:212..411Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11227 213..411 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185903.1387594-CDS-P-wetherbeei_contig11227:411..20161683185903.1387594-CDS-P-wetherbeei_contig11227:411..2016Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11227 412..2016 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11227.1.1prot_P-wetherbeei_contig11227.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11227 412..2016 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11227.1.1

>prot_P-wetherbeei_contig11227.1.1 ID=prot_P-wetherbeei_contig11227.1.1|Name=mRNA_P-wetherbeei_contig11227.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=535bp
MPLDRTGFTECSGRRKQIEVRRLGLPTHVPASQGLEVCVETRLEPAYLLF
SRRDVCRWRSWSIEKSLNEAAGEAHPDEAKASERLGVSKASPKAWEQFHQ
SFLDNLAKTNLARQLPQRRPSGIIAQPSPPETSAAGSGDGGFPTTQSGVG
AWGGGGGGRGESSVRGGQVFGDLFRNARHDSLGDAPINLGGGNGGGGGGR
ESAPSGLAVALGAFAPPSDDSGEGDDGCSAAQAGKEDDDGDRPLLRRQPH
VVPEVDSKAGTARLSDGGTRSVTFYQQDYVDKMLRMHFTEFHNSQKFGGV
KNDNASAFLGDELSVHRNNHFGAYFGAGSRGVTPPDAVLPLGHGRQDLMG
RSPQTGGAFGGVGGSPPGQWPPRPPRSGGDRADMLPPPPRLPSFAPSPEM
RSPRRLTTTMEADVEGSTVAAAPVVTLAATAAAPAPMPPAAALPPAQAPP
RTTAVPPAVTTKSPVVAPAATGGASSAAASAAVGPVLLPLVTAACWSPNK
RHWILPAVIAAFPEALLSTALRESPRAEFEETTVS
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mRNA from alignment at P-wetherbeei_contig11227:213..2016+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11227.1.1 ID=mRNA_P-wetherbeei_contig11227.1.1|Name=mRNA_P-wetherbeei_contig11227.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1804bp|location=Sequence derived from alignment at P-wetherbeei_contig11227:213..2016+ (Phaeothamnion wetherbeei SAG_119_79)
TTGTGTACAACGAGAGCAACAAGGAAGGTATGCAGGACGAAGAGGAAGAT
TTTTCCGCGTTGGAGAGGCGTCGCGCAGCCAACGCCCGGTGAGCGGTGTC
ATTTCTCCCCTGTTTTCCGGTTTTCGACAGGCTGAGTTTCGTTTTTCTCC
CATCTGCGCACATTAGCGCAGCGTTGCTTCGGGCGCTAAACGAATATCTA
TGCCTCTCGATCGGACGGGATTTACCGAATGCAGTGGGCGCAGAAAGCAG
ATTGAAGTGCGCCGCCTTGGATTACCCACTCACGTACCCGCGTCCCAGGG
ACTGGAAGTTTGTGTTGAAACGCGGCTCGAACCTGCCTATCTTTTGTTCT
CGCGCCGTGATGTTTGCAGATGGCGCAGCTGGAGCATAGAAAAGTCCCTC
AACGAGGCGGCGGGGGAGGCCCATCCCGACGAGGCCAAGGCGAGCGAGCG
CCTCGGGGTCTCAAAGGCGTCCCCAAAAGCATGGGAGCAATTCCACCAAA
GCTTCCTCGACAACCTTGCCAAGACCAACCTCGCCAGGCAGCTGCCGCAG
CGGCGGCCATCCGGCATCATAGCCCAGCCTTCGCCGCCCGAAACTTCCGC
GGCAGGCTCTGGCGACGGAGGCTTCCCGACGACTCAGTCCGGAGTTGGCG
CGTGGGGTGGAGGAGGAGGAGGAAGAGGGGAAAGCAGCGTCAGGGGCGGG
CAGGTATTCGGCGACCTCTTCAGAAACGCTCGCCACGACTCGCTGGGAGA
CGCGCCTATAAATTTGGGCGGCGGCAACGGCGGCGGCGGCGGCGGCAGAG
AGTCGGCGCCGAGCGGCCTGGCGGTTGCCCTCGGCGCTTTCGCGCCGCCG
TCGGACGACAGCGGAGAAGGAGACGACGGCTGCAGCGCCGCTCAGGCTGG
GAAGGAGGACGATGATGGCGACCGGCCGCTGCTGCGCCGCCAGCCGCACG
TCGTCCCCGAAGTGGACTCGAAGGCGGGGACTGCCCGCCTGAGCGACGGC
GGAACACGGTCCGTAACGTTCTACCAACAGGACTATGTCGACAAGATGCT
GCGGATGCACTTCACTGAGTTTCACAACAGCCAAAAGTTCGGCGGCGTCA
AGAACGACAACGCCAGCGCCTTTTTGGGCGACGAACTGTCGGTGCACCGC
AACAATCACTTCGGAGCGTACTTCGGGGCTGGCTCACGTGGTGTCACGCC
GCCGGATGCTGTTCTGCCGCTGGGACACGGCAGGCAGGATCTGATGGGGC
GTTCTCCACAGACAGGCGGCGCATTCGGCGGTGTTGGGGGCTCTCCTCCC
GGCCAATGGCCGCCGCGGCCGCCGCGATCGGGCGGCGATCGGGCGGACAT
GCTGCCGCCACCGCCGCGGCTCCCGAGCTTCGCACCATCGCCGGAAATGC
GATCACCGCGGCGGCTGACGACGACAATGGAAGCGGACGTGGAGGGATCG
ACGGTGGCGGCTGCTCCGGTGGTGACTTTGGCGGCTACCGCTGCTGCCCC
TGCGCCGATGCCACCGGCGGCCGCGTTGCCACCAGCGCAGGCGCCGCCAC
GAACGACCGCAGTGCCACCTGCGGTGACGACCAAGTCGCCCGTGGTGGCG
CCGGCCGCAACCGGAGGAGCCAGCAGCGCCGCCGCGTCCGCCGCTGTGGG
ACCCGTTCTGCTGCCGCTGGTAACGGCGGCTTGTTGGAGCCCAAACAAGC
GGCACTGGATCCTGCCGGCGGTGATTGCCGCGTTTCCGGAGGCGCTCTTG
AGCACGGCGCTCCGAGAAAGCCCACGGGCTGAATTCGAGGAGACAACCGT
CTCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11227:213..2016+

>mRNA_P-wetherbeei_contig11227.1.1 ID=mRNA_P-wetherbeei_contig11227.1.1|Name=mRNA_P-wetherbeei_contig11227.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1605bp|location=Sequence derived from alignment at P-wetherbeei_contig11227:213..2016+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCTCTCGATCGGACGGGATTTACCGAATGCAGTGGGCGCAGAAAGCA
GATTGAAGTGCGCCGCCTTGGATTACCCACTCACGTACCCGCGTCCCAGG
GACTGGAAGTTTGTGTTGAAACGCGGCTCGAACCTGCCTATCTTTTGTTC
TCGCGCCGTGATGTTTGCAGATGGCGCAGCTGGAGCATAGAAAAGTCCCT
CAACGAGGCGGCGGGGGAGGCCCATCCCGACGAGGCCAAGGCGAGCGAGC
GCCTCGGGGTCTCAAAGGCGTCCCCAAAAGCATGGGAGCAATTCCACCAA
AGCTTCCTCGACAACCTTGCCAAGACCAACCTCGCCAGGCAGCTGCCGCA
GCGGCGGCCATCCGGCATCATAGCCCAGCCTTCGCCGCCCGAAACTTCCG
CGGCAGGCTCTGGCGACGGAGGCTTCCCGACGACTCAGTCCGGAGTTGGC
GCGTGGGGTGGAGGAGGAGGAGGAAGAGGGGAAAGCAGCGTCAGGGGCGG
GCAGGTATTCGGCGACCTCTTCAGAAACGCTCGCCACGACTCGCTGGGAG
ACGCGCCTATAAATTTGGGCGGCGGCAACGGCGGCGGCGGCGGCGGCAGA
GAGTCGGCGCCGAGCGGCCTGGCGGTTGCCCTCGGCGCTTTCGCGCCGCC
GTCGGACGACAGCGGAGAAGGAGACGACGGCTGCAGCGCCGCTCAGGCTG
GGAAGGAGGACGATGATGGCGACCGGCCGCTGCTGCGCCGCCAGCCGCAC
GTCGTCCCCGAAGTGGACTCGAAGGCGGGGACTGCCCGCCTGAGCGACGG
CGGAACACGGTCCGTAACGTTCTACCAACAGGACTATGTCGACAAGATGC
TGCGGATGCACTTCACTGAGTTTCACAACAGCCAAAAGTTCGGCGGCGTC
AAGAACGACAACGCCAGCGCCTTTTTGGGCGACGAACTGTCGGTGCACCG
CAACAATCACTTCGGAGCGTACTTCGGGGCTGGCTCACGTGGTGTCACGC
CGCCGGATGCTGTTCTGCCGCTGGGACACGGCAGGCAGGATCTGATGGGG
CGTTCTCCACAGACAGGCGGCGCATTCGGCGGTGTTGGGGGCTCTCCTCC
CGGCCAATGGCCGCCGCGGCCGCCGCGATCGGGCGGCGATCGGGCGGACA
TGCTGCCGCCACCGCCGCGGCTCCCGAGCTTCGCACCATCGCCGGAAATG
CGATCACCGCGGCGGCTGACGACGACAATGGAAGCGGACGTGGAGGGATC
GACGGTGGCGGCTGCTCCGGTGGTGACTTTGGCGGCTACCGCTGCTGCCC
CTGCGCCGATGCCACCGGCGGCCGCGTTGCCACCAGCGCAGGCGCCGCCA
CGAACGACCGCAGTGCCACCTGCGGTGACGACCAAGTCGCCCGTGGTGGC
GCCGGCCGCAACCGGAGGAGCCAGCAGCGCCGCCGCGTCCGCCGCTGTGG
GACCCGTTCTGCTGCCGCTGGTAACGGCGGCTTGTTGGAGCCCAAACAAG
CGGCACTGGATCCTGCCGGCGGTGATTGCCGCGTTTCCGGAGGCGCTCTT
GAGCACGGCGCTCCGAGAAAGCCCACGGGCTGAATTCGAGGAGACAACCG
TCTCT
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