mRNA_P-wetherbeei_contig11219.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11219.1.1
Unique NamemRNA_P-wetherbeei_contig11219.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11219.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11219contigP-wetherbeei_contig11219:88..1476 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1389
Hectar predicted targeting categorysignal peptide
Exons1
Cds size747
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185902.65781-UTR-P-wetherbeei_contig11219:87..4561683185902.65781-UTR-P-wetherbeei_contig11219:87..456Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11219 88..456 -
1683185902.6762447-UTR-P-wetherbeei_contig11219:1203..14761683185902.6762447-UTR-P-wetherbeei_contig11219:1203..1476Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11219 1204..1476 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185902.6675277-CDS-P-wetherbeei_contig11219:456..12031683185902.6675277-CDS-P-wetherbeei_contig11219:456..1203Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11219 457..1203 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11219.1.1prot_P-wetherbeei_contig11219.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11219 457..1203 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11219.1.1

>prot_P-wetherbeei_contig11219.1.1 ID=prot_P-wetherbeei_contig11219.1.1|Name=mRNA_P-wetherbeei_contig11219.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=249bp
MPSRGFVASSIISTTLAYVGTVVALPPAVATTLRTFVLGFVARGRRSAGG
GGHATGGFGVPTRADLLSPLHLGGLGVRDPALWAMAGQQPMLLHFAAAWK
ADGPLATWAWATTQALEAAAAPWGNRCTLLHQPQLLPVLRRRLSDTRWRH
LLQALKGWYELPFEPFRDTKAKMLLMPLFYNRDEMTLSLKDQSGAVAKAM
ATHRRYVHAGRRGGAAERSPALDGSPDAEARRGAPGVSVWSGNPEAAA*
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mRNA from alignment at P-wetherbeei_contig11219:88..1476-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11219.1.1 ID=mRNA_P-wetherbeei_contig11219.1.1|Name=mRNA_P-wetherbeei_contig11219.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1389bp|location=Sequence derived from alignment at P-wetherbeei_contig11219:88..1476- (Phaeothamnion wetherbeei SAG_119_79)
GCAAAGACCCGGTCAGGGCTGGTGCCGCCGTGATTGCCACTGCCGTTGGC
GAGGCTGCCGCCGCCGCCGCCACCGATGCCGCAGCCGCCGTCGATGCCGC
GGCCGCCGCCGCCGCCGTAGCTGCCGTCATCGCCCGACACCACTTTCGGT
CCGCCGTCCTGCAGCCCGAACCAGAGCCCAAGCGTGACAGGGCGGCGTAC
CTGCCAACCACTGAGCTGAGAGAGGACGTCCTTCCGCCCGCTGTCCACCC
GAGAGAGGCGGGTGGCGCTGTCAATGCCCTCGCGGGGGTTCGTCGCCAGC
TCGATCATCTCTACAACGCTGGCCTACGTCGGAACCGTGGTGGCGCTGCC
ACCTGCTGTAGCCACAACCCTGCGAACCTTCGTGCTGGGCTTCGTGGCAA
GGGGCCGACGGAGTGCTGGGGGCGGCGGGCATGCGACCGGCGGATTCGGC
GTGCCCACGCGCGCTGACCTGCTCTCGCCGCTGCACCTGGGCGGCCTCGG
CGTTCGAGATCCGGCGCTCTGGGCGATGGCAGGGCAGCAGCCGATGCTGC
TGCATTTCGCAGCCGCCTGGAAAGCCGACGGGCCGCTGGCGACGTGGGCT
TGGGCGACGACGCAGGCGCTTGAGGCGGCCGCGGCGCCGTGGGGCAACCG
CTGCACGCTGCTGCACCAGCCACAGCTCCTGCCAGTCCTCCGCCGACGGC
TTTCTGACACGCGATGGAGGCACCTGCTGCAAGCGCTTAAGGGGTGGTAC
GAGCTTCCGTTCGAGCCATTTCGGGACACCAAGGCCAAAATGCTCTTGAT
GCCGCTGTTTTACAACCGCGACGAGATGACGCTGTCGCTGAAAGACCAGA
GCGGAGCGGTGGCGAAGGCGATGGCGACGCACCGCAGGTATGTTCATGCT
GGCAGACGTGGTGGAGCGGCCGAGCGGTCTCCCGCTCTCGACGGCAGCCC
TGACGCGGAGGCTAGGCGGGGGGCCCCTGGCGTATCGGTTTGGTCAGGCA
ATCCCGAAGCTGCTGCGTGAGTGGGTGCCGTTGGAGGTGCAGGCGGCTGG
ACAGCGGGCGGAAGGACATCTTCTCTCCGCTCCGCGGTTGGCTTGGGAGC
CGGGGCGCCGGTGGTAGGCAGCGGCGACGATGGCGACGGTCTCCCAGAAG
ACCGGCGGCTCCTGTGGATCGTGGACCTGCCCGCTCCTGCTATGGCTCCC
GTCGTCCCCGCACTCCTGCAGATACACCGCCCCGTCAAGCTCGGGCTTTG
GTTCGGGCTGCGGGACGACGGGCCGGTAATGGTGGCGGGCGAGGACGGCC
GCTGCGGCGGCGTCGCCAAGTGCAGTGGTTGGTTATCACGGTGGTTATCA
CGGCGGCACGAGTCCTGCCCGGGTCTTTGCCGTCAAAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11219:88..1476-

>mRNA_P-wetherbeei_contig11219.1.1 ID=mRNA_P-wetherbeei_contig11219.1.1|Name=mRNA_P-wetherbeei_contig11219.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=747bp|location=Sequence derived from alignment at P-wetherbeei_contig11219:88..1476- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCTCGCGGGGGTTCGTCGCCAGCTCGATCATCTCTACAACGCTGGC
CTACGTCGGAACCGTGGTGGCGCTGCCACCTGCTGTAGCCACAACCCTGC
GAACCTTCGTGCTGGGCTTCGTGGCAAGGGGCCGACGGAGTGCTGGGGGC
GGCGGGCATGCGACCGGCGGATTCGGCGTGCCCACGCGCGCTGACCTGCT
CTCGCCGCTGCACCTGGGCGGCCTCGGCGTTCGAGATCCGGCGCTCTGGG
CGATGGCAGGGCAGCAGCCGATGCTGCTGCATTTCGCAGCCGCCTGGAAA
GCCGACGGGCCGCTGGCGACGTGGGCTTGGGCGACGACGCAGGCGCTTGA
GGCGGCCGCGGCGCCGTGGGGCAACCGCTGCACGCTGCTGCACCAGCCAC
AGCTCCTGCCAGTCCTCCGCCGACGGCTTTCTGACACGCGATGGAGGCAC
CTGCTGCAAGCGCTTAAGGGGTGGTACGAGCTTCCGTTCGAGCCATTTCG
GGACACCAAGGCCAAAATGCTCTTGATGCCGCTGTTTTACAACCGCGACG
AGATGACGCTGTCGCTGAAAGACCAGAGCGGAGCGGTGGCGAAGGCGATG
GCGACGCACCGCAGGTATGTTCATGCTGGCAGACGTGGTGGAGCGGCCGA
GCGGTCTCCCGCTCTCGACGGCAGCCCTGACGCGGAGGCTAGGCGGGGGG
CCCCTGGCGTATCGGTTTGGTCAGGCAATCCCGAAGCTGCTGCGTGA
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