mRNA_P-wetherbeei_contig11215.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11215.1.1
Unique NamemRNA_P-wetherbeei_contig11215.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11215.1.1 vs. uniprot
Match: K8YYT0_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YYT0_NANGC)

HSP 1 Score: 138 bits (347), Expect = 2.240e-36
Identity = 60/99 (60.61%), Postives = 73/99 (73.74%), Query Frame = 1
Query:  448 PPYDAVINYRRSRDKGALRCVMCGARPRRGVCEIPRQNKDVCKDCDRVTWRHASTGVIFKWCKGCKRFSDVTAFGDKPEAAKCHACRERGRMCYLVKKG 744
            P Y+ +IN+ R++DK  +RCVMCG  P    C IPRQNKDVCKDCD+ TW+HA T V FKWCKGCK+F  +++F  K +AAKC  CRERGR  YL KKG
Sbjct:  130 PMYEELINFPRAKDKDDMRCVMCGLPPGEH-CVIPRQNKDVCKDCDKATWQHADTQVYFKWCKGCKKFLKLSSFSQKLDAAKCDKCRERGRQSYLAKKG 227          
BLAST of mRNA_P-wetherbeei_contig11215.1.1 vs. uniprot
Match: W7T4H3_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T4H3_9STRA)

HSP 1 Score: 139 bits (350), Expect = 2.410e-36
Identity = 62/108 (57.41%), Postives = 75/108 (69.44%), Query Frame = 1
Query:  448 PPYDAVINYRRSRDKGALRCVMCGARPRRGVCEIPRQNKDVCKDCDRVTWRHASTGVIFKWCKGCKRFSDVTAFGDKPEAAKCHACRERGRMCYLVKKGAFAAAGHHH 771
            P Y+ +IN+ R++DK  +RCVMCG  P    C IPRQNKDVCKDCD+ TW+HA T V FKWCKGCK+F  +++F  K +AAKC  CRERGR  YL KKG       HH
Sbjct:  139 PMYEELINFPRAKDKDDMRCVMCGLPPGEH-CVIPRQNKDVCKDCDKATWQHADTQVYFKWCKGCKKFLKLSSFSQKLDAAKCDKCRERGRQSYLAKKGKDXXXXSHH 245          
BLAST of mRNA_P-wetherbeei_contig11215.1.1 vs. uniprot
Match: A0A7S2WHQ6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WHQ6_9STRA)

HSP 1 Score: 142 bits (358), Expect = 5.390e-36
Identity = 61/99 (61.62%), Postives = 75/99 (75.76%), Query Frame = 1
Query:  448 PPYDAVINYRRSRDKGALRCVMCGARPRRGVCEIPRQNKDVCKDCDRVTWRHASTGVIFKWCKGCKRFSDVTAFGDKPEAAKCHACRERGRMCYLVKKG 744
            PPYD +INY R++DK  +RCVMCG  P    C IPRQNKDVCK+CD+ TW+H +T V FKWCKGCK+F  + +F +K +AAKC  CRERGR  YL+KKG
Sbjct:   40 PPYDDLINYPRAKDKDEIRCVMCGLPPG-SCCVIPRQNKDVCKECDKSTWQHIATNVYFKWCKGCKKFLRLGSFSEKLDAAKCDRCRERGRQSYLLKKG 137          
BLAST of mRNA_P-wetherbeei_contig11215.1.1 vs. uniprot
Match: A0A7S2F7Q2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F7Q2_9STRA)

HSP 1 Score: 137 bits (345), Expect = 4.150e-34
Identity = 56/100 (56.00%), Postives = 75/100 (75.00%), Query Frame = 1
Query:  442 DPPPYDAVINYRRSRDKGALRCVMCGARPRRGVCEIPRQNKDVCKDCDRVTWRHASTGVIFKWCKGCKRFSDVTAFGDKPEAAKCHACRERGRMCYLVKK 741
            D PPY+ +IN+ R++ K  +RCVMCG+ P    C IPRQNKDVCK+CD+ TW+H ++ + FKWCKGCK+F  + +F +K +AAKC  CRERGR  YL+KK
Sbjct:   44 DAPPYEELINFPRAKGKDEIRCVMCGSTPGFPGCVIPRQNKDVCKECDKSTWQHMASSIFFKWCKGCKKFLRLGSFSEKLDAAKCDRCRERGRQSYLLKK 143          
BLAST of mRNA_P-wetherbeei_contig11215.1.1 vs. uniprot
Match: A0A7R9UH40_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UH40_9STRA)

HSP 1 Score: 132 bits (333), Expect = 6.480e-32
Identity = 59/100 (59.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:  442 DPPPYDAVINYRRSRDKGALRCVMCGARPRRGVCEIPRQNKDVCKDCDRVTWRHASTGVIFKWCKGCKRFSDVTAFGDKPEAAKCHACRERGRMCYLVKK 741
            D P Y+ +IN+ R+RDK   +CVMCG RP   V  IPRQNKDVCKDCDR  W+H  T V FKWCKGCKRF ++  FGD+  AAKC  CR R R  Y+ KK
Sbjct:   37 DAPAYEDLINFPRARDKEQAQCVMCGRRPGASVV-IPRQNKDVCKDCDRQIWQHGKTLVFFKWCKGCKRFLNLVRFGDRLSAAKCEKCRHRARQSYMAKK 135          
BLAST of mRNA_P-wetherbeei_contig11215.1.1 vs. uniprot
Match: A0A7S4E5E9_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E5E9_9STRA)

HSP 1 Score: 127 bits (320), Expect = 2.060e-31
Identity = 58/96 (60.42%), Postives = 65/96 (67.71%), Query Frame = 1
Query:  454 YDAVINYRRSRDKGALRCVMCGARPRRGVCEIPRQNKDVCKDCDRVTWRHASTGVIFKWCKGCKRFSDVTAFGDKPEAAKCHACRERGRMCYLVKK 741
            YDAV NY R+    A  CVMCG    +GV  IPRQNKDVC+DCD+  WRH S+G  FKWCKGCK F  V  F  K +AAKC  CRERGR  YL+KK
Sbjct:   76 YDAVTNYARAAKGTAQSCVMCGCGASKGVV-IPRQNKDVCRDCDKAMWRHRSSGCFFKWCKGCKNFLHVGTFSQKLDAAKCDRCRERGRTSYLLKK 170          
BLAST of mRNA_P-wetherbeei_contig11215.1.1 vs. uniprot
Match: A0A8J2SF93_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SF93_9STRA)

HSP 1 Score: 113 bits (282), Expect = 3.250e-25
Identity = 56/150 (37.33%), Postives = 75/150 (50.00%), Query Frame = 1
Query:  412 PELANTKHPLDPPPYDAVINYRRSRDKGALRCVMCGARPRR---------------------------------------GVCEIPRQNKDVCKDCDRVTWRHASTGVIFKWCKGCKRFSDVTAFGDKPEAAKCHACRERGRMCYLVKKG 744
            P  A    P   P Y+ ++N+ R++ +  L CVMCG RPR                                        G   IPRQNKDVC++CD+  WRH ++ + FKWCKGCKRF ++ AF +K  A+KC  CRERGR  Y+ +KG
Sbjct:  296 PPGARLLDPGPAPAYELLVNFPRAKSRTQLHCVMCGRRPRDANPREPLPERAPPQPRNPRLDGMGDDRDDVQPGAERTLGGSVIIPRQNKDVCRECDKALWRHCASDIHFKWCKGCKRFRNLVAFAEKLAASKCDRCRERGRQGYMRRKG 445          
BLAST of mRNA_P-wetherbeei_contig11215.1.1 vs. uniprot
Match: A0A7S3ZSZ6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZSZ6_9STRA)

HSP 1 Score: 105 bits (262), Expect = 4.360e-25
Identity = 53/105 (50.48%), Postives = 65/105 (61.90%), Query Frame = 1
Query:  463 VINYRRSRDKGALR-CVMCGAR---PRRGV--------CEIPRQNKDVCKDCDRVTWRHASTGVIFKWCKGCKRFSDVTAFGDKPEAAKCHACRERGRMCYLVKK 741
            VIN+ R++ +GA   CVMCG R   P +G           IP QNKDVCK CD VTW+H  TG  FKWCKGCKRF ++ AF  K +A+KC   R RGR  Y+ +K
Sbjct:   14 VINFNRTKGRGAPHSCVMCGKRGRPPTKGKDPPADDDRVVIPTQNKDVCKVCDTVTWKHNPTGAYFKWCKGCKRFHEIHAFAGKLKASKCDDSRARGRAGYMRRK 118          
BLAST of mRNA_P-wetherbeei_contig11215.1.1 vs. uniprot
Match: A0A6S8TG69_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8TG69_9STRA)

HSP 1 Score: 112 bits (280), Expect = 6.060e-25
Identity = 56/110 (50.91%), Postives = 69/110 (62.73%), Query Frame = 1
Query:  448 PPYDAVINYRRSRDKGALR-CVMCGAR---PRRGV--------CEIPRQNKDVCKDCDRVTWRHASTGVIFKWCKGCKRFSDVTAFGDKPEAAKCHACRERGRMCYLVKK 741
            P YD+VIN+ R++ +GA   CVMCG R   P +G           IP QNKDVCK CD VTW+H  TG  FKWCKGCKRF ++ AF  K +A+KC   R RGR  Y+ +K
Sbjct:  338 PSYDSVINFNRTKGRGAPHSCVMCGKRGRPPTKGKDPPADDDRVVIPTQNKDVCKVCDTVTWKHNPTGAYFKWCKGCKRFHEIHAFAGKLKASKCDDSRARGRAGYMRRK 447          
BLAST of mRNA_P-wetherbeei_contig11215.1.1 vs. uniprot
Match: A0A7S3NIQ7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NIQ7_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.790e-24
Identity = 53/111 (47.75%), Postives = 64/111 (57.66%), Query Frame = 1
Query:  454 YDAVINYRRSRDKGALRCVMCG--ARPRRGVCE-------------IPRQNKDVCKDCDRVTWRHASTGVIFKWCKGCKRFSDVTAFGDKPEAAKCHACRERGRMCYLVKK 741
            Y++V NY R+       CVMCG  A   RG  +             IPRQNKDVC+DCD+V W H ++   FKWCKGCK F  +  F  K +AAKC  CRERGR  YL+KK
Sbjct:   36 YESVTNYTRAAKGSTQICVMCGNLASHSRGGGDQCGDDDQPPGTTIIPRQNKDVCRDCDKVIWNHETSNAYFKWCKGCKNFLQIGNFSQKLDAAKCDKCRERGRTSYLLKK 146          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11215.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
K8YYT0_NANGC2.240e-3660.61Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
W7T4H3_9STRA2.410e-3657.41Uncharacterized protein (Fragment) n=2 Tax=Monodop... [more]
A0A7S2WHQ6_9STRA5.390e-3661.62Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2F7Q2_9STRA4.150e-3456.00Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7R9UH40_9STRA6.480e-3259.00Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S4E5E9_9STRA2.060e-3160.42Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A8J2SF93_9STRA3.250e-2537.33Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S3ZSZ6_9STRA4.360e-2550.48Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6S8TG69_9STRA6.060e-2550.91Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3NIQ7_9STRA1.790e-2447.75Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11215contigP-wetherbeei_contig11215:127..1242 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog44056.XP_009036934.1
PFAMszf-CXXC
Model size771
Max annot lvl2759|Eukaryota
KEGG rclassRC00185,RC03038
KEGG koko:K10276
KEGG ReactionR10056
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.46e-22
EggNOG OGsCOG2940@1|root,KOG1084@2759|Eukaryota
EC1.14.11.27
DescriptionDNA binding
Cds size771
COG categoryU
BRITEko00000,ko01000,ko03036,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185902.5673647-CDS-P-wetherbeei_contig11215:126..6171683185902.5673647-CDS-P-wetherbeei_contig11215:126..617Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11215 127..617 -
1683185902.5786767-CDS-P-wetherbeei_contig11215:962..12421683185902.5786767-CDS-P-wetherbeei_contig11215:962..1242Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11215 963..1242 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11215.1.1prot_P-wetherbeei_contig11215.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11215 127..1242 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11215.1.1

>prot_P-wetherbeei_contig11215.1.1 ID=prot_P-wetherbeei_contig11215.1.1|Name=mRNA_P-wetherbeei_contig11215.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=257bp
SKTRGKKRRAKKRGCRTTSTTSLVDKNWLHPSCVVETPLAKSQRFWRDGA
KPRRSLSRMRTENRRMCGDGGSAAAANGGMLCDEMQDDGSSQKDAAKEQQ
QQHHHFEGLGLYTAAAAAAAAASAASMQHSEPFLDRLPELANTKHPLDPP
PYDAVINYRRSRDKGALRCVMCGARPRRGVCEIPRQNKDVCKDCDRVTWR
HASTGVIFKWCKGCKRFSDVTAFGDKPEAAKCHACRERGRMCYLVKKGAF
AAAGHHH
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mRNA from alignment at P-wetherbeei_contig11215:127..1242-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11215.1.1 ID=mRNA_P-wetherbeei_contig11215.1.1|Name=mRNA_P-wetherbeei_contig11215.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1116bp|location=Sequence derived from alignment at P-wetherbeei_contig11215:127..1242- (Phaeothamnion wetherbeei SAG_119_79)
AGCAAAACGAGAGGGAAAAAAAGGAGAGCGAAGAAGAGAGGGTGCCGGAC GACGTCTACGACATCGCTTGTCGACAAAAACTGGTTGCACCCCTCTTGTG TGGTGGAAACTCCTTTGGCGAAGTCTCAACGCTTTTGGCGAGACGGAGCG AAGCCAAGAAGAAGCTTATCGCGAATGAGGACCGAGAACAGACGGATGTG CGGTGACGGCGGTTCCGCAGCCGCCGCAAACGGGGGCATGCTTTGCGACG AGATGCAGGACGATGGCTCCTCTCAAAAAGGTACGTGTCTTGCAGATCAC GTGGATCTTTTTTCTCTGGGAGAGCCGTGTCCATCGTTCTAGCGCGACTC GTTCCGTTTCACGTATTTTTGCATTCGTCCGCTGGTGCATCGTGTTTGGC GCCCGCTTTTTTCCGTATTCCTTCTGTATTTACTTTCAAACTAAGATCTC CTGCTGTTGTCCACGACTCCTTCGATGCTGTCCTCTCTGCCTTACTTGTT CTCACCTGCCAACCCCCCACCCCTGAGCTAGGAAAGAGGATCCCAAAATC CGGAAAGTCCTCGTGCCTTTGCCGCCTCCCATCGTCTTGCTCACTGCCGC CATCCTAAAACATCGTTGCCATCAGACGCCGCAAAAGAGCAGCAGCAGCA GCACCACCACTTTGAAGGGCTCGGACTCTACACGGCGGCAGCGGCTGCCG CAGCGGCCGCGAGCGCCGCGAGCATGCAGCACAGCGAGCCCTTCCTCGAC CGCCTCCCCGAGCTCGCCAACACGAAGCACCCGCTGGACCCGCCGCCGTA CGACGCCGTTATCAACTACCGCCGCTCGCGCGACAAGGGTGCCCTCCGCT GTGTCATGTGCGGCGCCCGCCCGCGGCGCGGCGTCTGCGAAATCCCGCGG CAGAACAAAGACGTCTGCAAGGACTGCGACCGCGTCACGTGGCGGCACGC CTCGACGGGCGTCATCTTCAAGTGGTGCAAGGGCTGCAAGCGCTTCTCTG ACGTGACCGCGTTCGGCGACAAACCCGAGGCCGCCAAGTGCCATGCCTGC CGCGAGCGCGGCCGCATGTGCTACCTCGTGAAGAAGGGCGCCTTCGCGGC AGCGGGCCACCACCAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11215:127..1242-

>mRNA_P-wetherbeei_contig11215.1.1 ID=mRNA_P-wetherbeei_contig11215.1.1|Name=mRNA_P-wetherbeei_contig11215.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=771bp|location=Sequence derived from alignment at P-wetherbeei_contig11215:127..1242- (Phaeothamnion wetherbeei SAG_119_79)
AGCAAAACGAGAGGGAAAAAAAGGAGAGCGAAGAAGAGAGGGTGCCGGAC
GACGTCTACGACATCGCTTGTCGACAAAAACTGGTTGCACCCCTCTTGTG
TGGTGGAAACTCCTTTGGCGAAGTCTCAACGCTTTTGGCGAGACGGAGCG
AAGCCAAGAAGAAGCTTATCGCGAATGAGGACCGAGAACAGACGGATGTG
CGGTGACGGCGGTTCCGCAGCCGCCGCAAACGGGGGCATGCTTTGCGACG
AGATGCAGGACGATGGCTCCTCTCAAAAAGACGCCGCAAAAGAGCAGCAG
CAGCAGCACCACCACTTTGAAGGGCTCGGACTCTACACGGCGGCAGCGGC
TGCCGCAGCGGCCGCGAGCGCCGCGAGCATGCAGCACAGCGAGCCCTTCC
TCGACCGCCTCCCCGAGCTCGCCAACACGAAGCACCCGCTGGACCCGCCG
CCGTACGACGCCGTTATCAACTACCGCCGCTCGCGCGACAAGGGTGCCCT
CCGCTGTGTCATGTGCGGCGCCCGCCCGCGGCGCGGCGTCTGCGAAATCC
CGCGGCAGAACAAAGACGTCTGCAAGGACTGCGACCGCGTCACGTGGCGG
CACGCCTCGACGGGCGTCATCTTCAAGTGGTGCAAGGGCTGCAAGCGCTT
CTCTGACGTGACCGCGTTCGGCGACAAACCCGAGGCCGCCAAGTGCCATG
CCTGCCGCGAGCGCGGCCGCATGTGCTACCTCGTGAAGAAGGGCGCCTTC
GCGGCAGCGGGCCACCACCAT
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