mRNA_P-wetherbeei_contig11208.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11208.2.1
Unique NamemRNA_P-wetherbeei_contig11208.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11208.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11208contigP-wetherbeei_contig11208:600..1889 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1061
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_000680.1
Cds size1059
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185902.1447308-CDS-P-wetherbeei_contig11208:599..9581683185902.1447308-CDS-P-wetherbeei_contig11208:599..958Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11208 600..958 +
1683185902.1526067-CDS-P-wetherbeei_contig11208:1187..18871683185902.1526067-CDS-P-wetherbeei_contig11208:1187..1887Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11208 1188..1887 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11208.2.1prot_P-wetherbeei_contig11208.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11208 600..1887 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11208.2.1

>prot_P-wetherbeei_contig11208.2.1 ID=prot_P-wetherbeei_contig11208.2.1|Name=mRNA_P-wetherbeei_contig11208.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=353bp
PQKWTRNRPSRTRPALLAKMMDDPEEKERQELDELFQGITLQLDGEGAGK
GSSAAAGESVEEVLLWFDQGMGGGETSPGSPPPAVPMPHAPKTVVAPLVS
LRSGDAKASESKPAGIAKSRLAVLPPIPPGGDSSGSSTDATEKAHVTGSG
ASSANGGTGGASSGENASDVTEEATLDPASNFCELDDLAAAASQWAKPGT
IVLGKAKPTAAARGSAAAAAAAESVPPPVPVRAVEVLVRPDVSWMSIAET
FETVMLSHGLVARAAGPGELVAEVPSASAAAGGGSSGSGGGGSGSRCVVS
LRIGVTPAKLRAVLVRFYRAGSLPAAAAAAAASATAADRGSLPGTDRRRG
GSG
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mRNA from alignment at P-wetherbeei_contig11208:600..1889+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11208.2.1 ID=mRNA_P-wetherbeei_contig11208.2.1|Name=mRNA_P-wetherbeei_contig11208.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1290bp|location=Sequence derived from alignment at P-wetherbeei_contig11208:600..1889+ (Phaeothamnion wetherbeei SAG_119_79)
CCGCAAAAGTGGACAAGGAATAGGCCTTCTCGGACAAGGCCTGCTCTCTT
GGCAAAAATGATGGACGATCCCGAGGAGAAGGAGCGGCAGGAGCTGGATG
AGCTGTTTCAGGGCATTACATTGCAACTAGACGGGGAAGGCGCCGGGAAA
GGATCCTCGGCCGCCGCTGGCGAAAGCGTAGAAGAAGTATTGCTATGGTT
CGACCAGGGCATGGGCGGCGGTGAAACCTCGCCGGGGTCCCCTCCGCCGG
CGGTTCCGATGCCCCATGCACCGAAGACAGTCGTTGCTCCTCTCGTCTCA
CTTCGTAGTGGAGATGCGAAAGCAAGTGAAAGCAAGCCTGCCGGGATCGC
CAAATCTAGGTGGGCCGAGATATTGTAATCTTCCTCTTTAGATTTACAAG
CAGCATTTCCCTTCCCTACCTTCTGGGTACCAATGCACCACCTCTCTCCG
TATTGGAGCTGCAGCGATCAGGTTTTTTGTTTTTCCATGTTTAATGCGAT
GGTAGTGAAGGTCTCGCCTGCCTCACACCATCGCCATTTTCTTCACGTCT
CAACAACGATATGCTCTGCTCCCATTGGAACGCACAAGGCTCGCTGTGTT
ACCGCCGATCCCACCGGGCGGCGACAGCAGCGGAAGCAGCACAGACGCGA
CGGAGAAAGCACATGTCACTGGCAGCGGCGCTAGCAGCGCGAACGGCGGT
ACCGGCGGTGCCAGCAGCGGGGAAAATGCCAGTGACGTCACAGAAGAAGC
CACTCTTGACCCTGCTTCCAACTTTTGCGAACTAGACGATTTGGCGGCGG
CGGCCTCGCAATGGGCAAAGCCGGGAACGATCGTTCTCGGGAAAGCGAAG
CCGACCGCGGCGGCGCGCGGCTCCGCCGCCGCCGCCGCCGCCGCCGAGTC
CGTCCCGCCGCCGGTCCCTGTGCGAGCAGTGGAGGTTCTGGTGCGGCCCG
ACGTCTCATGGATGTCCATCGCCGAAACGTTTGAAACCGTCATGCTCTCG
CATGGCCTGGTCGCGCGGGCCGCCGGCCCCGGCGAGCTGGTTGCAGAGGT
TCCTTCCGCGTCAGCAGCGGCTGGCGGTGGCAGCAGCGGTAGCGGCGGCG
GTGGCAGCGGCAGCAGGTGTGTGGTGTCGCTGCGGATCGGCGTGACGCCG
GCCAAGTTACGCGCAGTACTCGTGCGATTCTATCGTGCGGGGAGCCTCCC
CGCCGCCGCCGCCGCCGCCGCCGCATCTGCCACCGCGGCAGACCGCGGCA
GCCTGCCGGGAACCGACCGAAGGCGCGGCGGCAGCGGGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11208:600..1889+

>mRNA_P-wetherbeei_contig11208.2.1 ID=mRNA_P-wetherbeei_contig11208.2.1|Name=mRNA_P-wetherbeei_contig11208.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1059bp|location=Sequence derived from alignment at P-wetherbeei_contig11208:600..1889+ (Phaeothamnion wetherbeei SAG_119_79)
CCGCAAAAGTGGACAAGGAATAGGCCTTCTCGGACAAGGCCTGCTCTCTT
GGCAAAAATGATGGACGATCCCGAGGAGAAGGAGCGGCAGGAGCTGGATG
AGCTGTTTCAGGGCATTACATTGCAACTAGACGGGGAAGGCGCCGGGAAA
GGATCCTCGGCCGCCGCTGGCGAAAGCGTAGAAGAAGTATTGCTATGGTT
CGACCAGGGCATGGGCGGCGGTGAAACCTCGCCGGGGTCCCCTCCGCCGG
CGGTTCCGATGCCCCATGCACCGAAGACAGTCGTTGCTCCTCTCGTCTCA
CTTCGTAGTGGAGATGCGAAAGCAAGTGAAAGCAAGCCTGCCGGGATCGC
CAAATCTAGGCTCGCTGTGTTACCGCCGATCCCACCGGGCGGCGACAGCA
GCGGAAGCAGCACAGACGCGACGGAGAAAGCACATGTCACTGGCAGCGGC
GCTAGCAGCGCGAACGGCGGTACCGGCGGTGCCAGCAGCGGGGAAAATGC
CAGTGACGTCACAGAAGAAGCCACTCTTGACCCTGCTTCCAACTTTTGCG
AACTAGACGATTTGGCGGCGGCGGCCTCGCAATGGGCAAAGCCGGGAACG
ATCGTTCTCGGGAAAGCGAAGCCGACCGCGGCGGCGCGCGGCTCCGCCGC
CGCCGCCGCCGCCGCCGAGTCCGTCCCGCCGCCGGTCCCTGTGCGAGCAG
TGGAGGTTCTGGTGCGGCCCGACGTCTCATGGATGTCCATCGCCGAAACG
TTTGAAACCGTCATGCTCTCGCATGGCCTGGTCGCGCGGGCCGCCGGCCC
CGGCGAGCTGGTTGCAGAGGTTCCTTCCGCGTCAGCAGCGGCTGGCGGTG
GCAGCAGCGGTAGCGGCGGCGGTGGCAGCGGCAGCAGGTGTGTGGTGTCG
CTGCGGATCGGCGTGACGCCGGCCAAGTTACGCGCAGTACTCGTGCGATT
CTATCGTGCGGGGAGCCTCCCCGCCGCCGCCGCCGCCGCCGCCGCATCTG
CCACCGCGGCAGACCGCGGCAGCCTGCCGGGAACCGACCGAAGGCGCGGC
GGCAGCGGG
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