mRNA_P-wetherbeei_contig11208.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11208.1.1
Unique NamemRNA_P-wetherbeei_contig11208.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11208.1.1 vs. uniprot
Match: D8LBA5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBA5_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 3.170e-23
Identity = 54/81 (66.67%), Postives = 64/81 (79.01%), Query Frame = 1 
Query:    1 AVAAPPVPAQASPQPLNPLKHLVIDTAAIIKGAGMTLAGHAERFWTVPEVLQEVRDKKARHHLDTLPFELQLREPSDEALR 243
            AV A P PA A+      L HLVID+ AIIKGAGMTLA  AE FWT+PEV+ E+RDKKAR HL++LPFEL+LREPSDEA++
Sbjct:   60 AVGAGPSPAPAAGD--QKLTHLVIDSGAIIKGAGMTLASAAENFWTIPEVVAEIRDKKARQHLESLPFELKLREPSDEAMK 138
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BLAST of mRNA_P-wetherbeei_contig11208.1.1 vs. uniprot
Match: A0A6H5KFQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ3_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 6.630e-23
Identity = 47/63 (74.60%), Postives = 56/63 (88.89%), Query Frame = 1 
Query:   55 LKHLVIDTAAIIKGAGMTLAGHAERFWTVPEVLQEVRDKKARHHLDTLPFELQLREPSDEALR 243
            L HLVID+ AIIKGAGMTLA  AE FWT+PEV+ E+RDKKAR HL++LPFEL+LREPSDEA++
Sbjct:   76 LTHLVIDSGAIIKGAGMTLASAAENFWTIPEVVAEIRDKKARQHLESLPFELKLREPSDEAMK 138
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BLAST of mRNA_P-wetherbeei_contig11208.1.1 vs. uniprot
Match: A0A835YK00_9STRA (Putative RNA binding protein NOB1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK00_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.380e-19
Identity = 48/72 (66.67%), Postives = 57/72 (79.17%), Query Frame = 1 
Query:   25 AQASPQPLNPLKHLVIDTAAIIKGAGMTLAGHAERFWTVPEVLQEVRDKKARHHLDTLPFELQLREPSDEAL 240
            AQASP   + LKHLVID+ A+I G+   L   AE+FWTVP VL E+RDKKARH LDTLP+EL+LREPS+EAL
Sbjct:   21 AQASPP--SQLKHLVIDSGAVITGSAAGLVYSAEQFWTVPAVLAEIRDKKARHLLDTLPYELKLREPSEEAL 90
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BLAST of mRNA_P-wetherbeei_contig11208.1.1 vs. uniprot
Match: A0A4D9CQR9_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQR9_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 5.630e-19
Identity = 48/82 (58.54%), Postives = 57/82 (69.51%), Query Frame = 1 
Query:   16 PVPAQASPQPLNP------LKHLVIDTAAIIKGAGMTLAGHAERFWTVPEVLQEVRDKKARHHLDTLPFELQLREPSDEALR 243
            PV   ASP P  P       +HLV+DT AIIKG G +LA  AE FWT+PEV+ EVRD +AR HLD+LPFEL+ REPS EA +
Sbjct:   38 PVEMSASPTPQTPPGVRSKSRHLVLDTGAIIKGQGYSLARLAEHFWTIPEVIAEVRDPRARLHLDSLPFELRTREPSSEACK 119
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BLAST of mRNA_P-wetherbeei_contig11208.1.1 vs. uniprot
Match: A0A484E6S8_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E6S8_BRELC)

HSP 1 Score: 78.6 bits (192), Expect = 3.290e-15
Identity = 42/76 (55.26%), Postives = 53/76 (69.74%), Query Frame = 1 
Query:   16 PVPAQASPQPLNPLKHLVIDTAAIIKGAGMTLAGHAERFWTVPEVLQEVRDKKARHHLDTLPFELQLREPSDEALR 243
            P+P   +P+    + HLVID+ AIIKG    LAG AE FWTVP+VL E+RDKK+R  L+ LPF L  REPS EA++
Sbjct:   40 PMPQLLTPEKAKKVLHLVIDSGAIIKGTN--LAGLAENFWTVPDVLNEIRDKKSRGILERLPFSLHTREPSAEAMK 113
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BLAST of mRNA_P-wetherbeei_contig11208.1.1 vs. uniprot
Match: F0YA89_AURAN (HTH La-type RNA-binding domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YA89_AURAN)

HSP 1 Score: 76.6 bits (187), Expect = 1.640e-14
Identity = 37/60 (61.67%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:   58 KHLVIDTAAIIKGAGMTLAGHAERFWTVPEVLQEVRDKKARHHLDTLPFELQLREPSDEA 237
            KHLV+D  A+I+G   +LAG+AERFWT+ EVL EVRD K+R  L  LPFEL++R PS EA
Sbjct:   98 KHLVLDANALIRGRAASLAGYAERFWTIEEVLAEVRDDKSREQLLRLPFELEVRRPSAEA 157
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BLAST of mRNA_P-wetherbeei_contig11208.1.1 vs. uniprot
Match: A0A8K1FH82_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FH82_PYTOL)

HSP 1 Score: 74.7 bits (182), Expect = 7.410e-14
Identity = 43/76 (56.58%), Postives = 53/76 (69.74%), Query Frame = 1 
Query:   16 PVPAQASPQPLNPLKHLVIDTAAIIKGAGMTLAGHAERFWTVPEVLQEVRDKKARHHLDTLPFELQLREPSDEALR 243
            P PA AS +    + HLV+D+ AIIKG    LA  AE FWTVP+V+ E+RDK+AR  LD LPF LQ REPS EA++
Sbjct:   20 PTPAAASAK--KKVLHLVVDSGAIIKGTN--LAPLAENFWTVPDVVAEIRDKRARAILDALPFTLQTREPSAEAMK 91
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BLAST of mRNA_P-wetherbeei_contig11208.1.1 vs. uniprot
Match: A0A080ZFK0_PHYPR (C3H1-type domain-containing protein n=1 Tax=Phytophthora parasitica P1976 TaxID=1317066 RepID=A0A080ZFK0_PHYPR)

HSP 1 Score: 73.2 bits (178), Expect = 9.400e-14
Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:   61 HLVIDTAAIIKGAGMTLAGHAERFWTVPEVLQEVRDKKARHHLDTLPFELQLREPSDEALR 243
            HLVID+ AIIKG  + +   AE FWTVP+VL E+RDKK+R  L+ LPF LQ REPS EA++
Sbjct:   54 HLVIDSGAIIKGTNLAVL--AENFWTVPDVLDEIRDKKSRAILERLPFTLQTREPSAEAMK 112
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BLAST of mRNA_P-wetherbeei_contig11208.1.1 vs. uniprot
Match: A0A0N7L7S3_PLAHL (Rna-binding protein nob1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L7S3_PLAHL)

HSP 1 Score: 73.9 bits (180), Expect = 1.390e-13
Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:   28 QASPQPLNPLKHLVIDTAAIIKGAGMTLAGHAERFWTVPEVLQEVRDKKARHHLDTLPFELQLREPSDEALR 243
            ++SP     + HLVID+ AIIKG  + +   AE FWTVP+VL E+RDKK+R  L+ LPF LQ REPS  A++
Sbjct:   43 KSSPATTKKVLHLVIDSGAIIKGTNLVIL--AENFWTVPDVLDEIRDKKSRAFLERLPFTLQTREPSAAAMK 112
[Close]
BLAST of mRNA_P-wetherbeei_contig11208.1.1 vs. uniprot
Match: A0A421H299_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421H299_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.400e-13
Identity = 39/72 (54.17%), Postives = 51/72 (70.83%), Query Frame = 1 
Query:   28 QASPQPLNPLKHLVIDTAAIIKGAGMTLAGHAERFWTVPEVLQEVRDKKARHHLDTLPFELQLREPSDEALR 243
            Q +P+    + HLVID+ AIIKG  + +   AE FWTVP+VL E+RDKK+R  L+ LPF LQ REPS EA++
Sbjct:   49 QEAPKSNKKVLHLVIDSGAIIKGTNLGVL--AENFWTVPDVLNEIRDKKSRAVLERLPFTLQTREPSAEAMK 118
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11208.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBA5_ECTSI3.170e-2366.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KFQ3_9PHAE6.630e-2374.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YK00_9STRA1.380e-1966.67Putative RNA binding protein NOB1 n=1 Tax=Tribonem... [more]
A0A4D9CQR9_9STRA5.630e-1958.54Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A484E6S8_BRELC3.290e-1555.26Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
F0YA89_AURAN1.640e-1461.67HTH La-type RNA-binding domain-containing protein ... [more]
A0A8K1FH82_PYTOL7.410e-1456.58Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A080ZFK0_PHYPR9.400e-1460.66C3H1-type domain-containing protein n=1 Tax=Phytop... [more]
A0A0N7L7S3_PLAHL1.390e-1352.78Rna-binding protein nob1 n=1 Tax=Plasmopara halste... [more]
A0A421H299_9STRA1.400e-1354.17Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11208contigP-wetherbeei_contig11208:230..472 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LBA5
Preferred nameNOB1
PFAMsNOB1_Zn_bind,PIN_6,WRNPLPNID
Model size243
Max annot lvl2759|Eukaryota
KEGG koko:K10601,ko:K11883
KEGG Pathwayko03008,ko04120,ko04141,map03008,map04120,map04141
KEGG ModuleM00403
Hectar predicted targeting categoryother localisation
GOsGO:0000462,GO:0000469,GO:0000478,GO:0003008,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0007600,GO:0007601,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0016787,GO:0016788,GO:0019843,GO:0022607,GO:0022613,GO:0030490,GO:0030684,GO:0030688,GO:0031974,GO:0031981,GO:0032501,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043248,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050877,GO:0050953,GO:0065003,GO:0070013,GO:0070181,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901363,GO:1990904
Exons1
Evalue5.2e-24
EggNOG OGsCOG1439@1|root,KOG2463@2759|Eukaryota
EC2.3.2.27
Descriptioncleavage involved in rRNA processing
Cds size243
COG categoryK
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03051,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185902.1897805-CDS-P-wetherbeei_contig11208:229..4721683185902.1897805-CDS-P-wetherbeei_contig11208:229..472Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11208 230..472 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11208.1.1prot_P-wetherbeei_contig11208.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11208 230..472 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11208.1.1

>prot_P-wetherbeei_contig11208.1.1 ID=prot_P-wetherbeei_contig11208.1.1|Name=mRNA_P-wetherbeei_contig11208.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=81bp
AVAAPPVPAQASPQPLNPLKHLVIDTAAIIKGAGMTLAGHAERFWTVPEV
LQEVRDKKARHHLDTLPFELQLREPSDEALR
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mRNA from alignment at P-wetherbeei_contig11208:230..472-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11208.1.1 ID=mRNA_P-wetherbeei_contig11208.1.1|Name=mRNA_P-wetherbeei_contig11208.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig11208:230..472- (Phaeothamnion wetherbeei SAG_119_79)
GCGGTTGCCGCACCACCCGTCCCCGCACAAGCCTCACCGCAGCCACTAAA
CCCACTAAAGCATCTTGTGATCGATACGGCCGCCATCATCAAGGGTGCAG
GCATGACGCTGGCCGGTCACGCCGAGCGTTTCTGGACCGTCCCCGAGGTG
CTGCAGGAGGTTCGGGACAAGAAGGCGCGCCATCACCTCGACACCCTCCC
CTTCGAGCTCCAGCTGCGCGAGCCTTCCGACGAGGCGCTGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11208:230..472-

>mRNA_P-wetherbeei_contig11208.1.1 ID=mRNA_P-wetherbeei_contig11208.1.1|Name=mRNA_P-wetherbeei_contig11208.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig11208:230..472- (Phaeothamnion wetherbeei SAG_119_79)
GCGGTTGCCGCACCACCCGTCCCCGCACAAGCCTCACCGCAGCCACTAAA
CCCACTAAAGCATCTTGTGATCGATACGGCCGCCATCATCAAGGGTGCAG
GCATGACGCTGGCCGGTCACGCCGAGCGTTTCTGGACCGTCCCCGAGGTG
CTGCAGGAGGTTCGGGACAAGAAGGCGCGCCATCACCTCGACACCCTCCC
CTTCGAGCTCCAGCTGCGCGAGCCTTCCGACGAGGCGCTGCGC
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